Rroxscaffold_2G00101730
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000182
Physical Location & Seq
Reverse (-)
23601799 .. 23609484
7686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101730.1

Sequence Viewer

Length: 828 bp
ATGTGCGGTGTCACGCTCCGGTGGGGAGAGTGGAGTGCACGCACCAATTGGGGGGAAGCGAAAGTCCTTCTATCACCGCCGGCTACCAATGGGCGCTTCTCGGCCATCACCTCCGCCTACTCCATCGTCAATCCGGGTCTCCGAACAATCAAGTCCCGGATCCGGGACGAGGCGTCGGTGAATGAAGCCATCCTCGAATCCTTGGAGTCGATTGAGGTTTTGGACCGCAACCAAGGGATTCGATCATGGACTCTAGATCCCGAGTTCACTACAATCTCCATCGGACGGCGGCCGACTAGGGCGATTGGGGATGGTGATCTCGTAGCCGAAGTTGGGCGTTGGGACGGGACGACGGCGAAGGAGGTGGAGGGAGGGAGTTTTGAGTTCCAAGAAGGTTGTTTTACTTCTCAAGATGATTTACTTCGCATTCCTCCTCATGCGACTATCTTTATGTATGCCCCAACCTTGAGTAGCCCTATGTATAGTTGGGTTCCAGAAGTTTGTGACACTTTTCACCGTTACTCGCTTCCTCTCAACCTCTTCCATTTGCTTTGCACTATGGCTTTCAGCCCCAATGCCCAAGCCCGTGCCAATGCCTCTTCCTCTCGACGGGCCATTTCCGTTTTAAAACCCTATTCTTTGTTCCCCCAAGTTCCTACGGATAACTCCTTCCCCGTTAACTTTGGTGATGAAACCTTCCATGTTGATACTACCCTGACCTATGTTGATTTGCCTTCACCGCCCACCGGTTTCTTTGAACATTACTTAAACCACTGCATTGTCGGTAAGCTCTTTGGCAAGAAACTTCCAATTGAAGTTGTAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO Myb_DNA-binding

Protein Analysis

275

Amino Acids

30.58

Weight (kDa)

5.55

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 6, 77, 114, 226, 289, 740
AclWI GGATC 3 cut(s) 154, 167, 251
AcoI YGGCCR 2 cut(s) 102, 290
AcyI GRCGYC 1 cut(s) 173
AfiI CCNNNNNNNGG 8 cut(s) 51, 162, 163, 169, 285, 333, 609, 746
AgeI ACCGGT 1 cut(s) 746
AgsI TTSAA 2 cut(s) 758, 815
AhdI GACNNNNNGTC 1 cut(s) 172
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 1 cut(s) 790
AluI AGCT 1 cut(s) 790
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 36
AlwI GGATC 3 cut(s) 154, 167, 251
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 3 cut(s) 102, 290, 612
ApaLI GTGCAC 1 cut(s) 36
AsiGI ACCGGT 1 cut(s) 746
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 223, 612
AsuC2I CCSGG 3 cut(s) 135, 157, 164
AsuHPI GGTGA 7 cut(s) 66, 100, 190, 326, 506, 698, 729
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 40
BamHI GGATCC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 40
BccI CCATC 5 cut(s) 113, 131, 197, 287, 305
BceAI ACGGC 2 cut(s) 302, 369
BcnI CCSGG 3 cut(s) 135, 157, 164
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 2 cut(s) 254, 297
BfoI RGCGCY 1 cut(s) 97
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
Bme1390I CCNGG 3 cut(s) 135, 157, 164
Bme18I GGWCC 1 cut(s) 223
BmeRI GACNNNNNGTC 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 223, 612
BmiI GGNNCC 2 cut(s) 161, 492
BmrFI CCNGG 3 cut(s) 135, 157, 164
BpuEI CTTGAG 2 cut(s) 393, 487
BpuMI CCSGG 3 cut(s) 135, 157, 164
BsaBI GATNNNNATC 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 201, 232
BsaWI WCCGGW 2 cut(s) 18, 746
Bsc4I CCNNNNNNNGG 8 cut(s) 51, 162, 163, 169, 285, 333, 609, 746
Bse118I RCCGGY 2 cut(s) 79, 746
Bse8I GATNNNNATC 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 201, 232
BseGI GGATG 2 cut(s) 189, 316
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 8 cut(s) 51, 162, 163, 169, 285, 333, 609, 746
BseRI GAGGAG 1 cut(s) 423
BseSI GKGCMC 1 cut(s) 40
BseX3I CGGCCG 1 cut(s) 290
Bsh1285I CGRYCG 1 cut(s) 293
BshFI GGCC 3 cut(s) 104, 292, 614
BshTI ACCGGT 1 cut(s) 746
BsiEI CGRYCG 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 6 cut(s) 19, 80, 134, 157, 163, 747
BslFI GGGAC 4 cut(s) 139, 179, 356, 361
BslI CCNNNNNNNGG 8 cut(s) 51, 162, 163, 169, 285, 333, 609, 746
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 4 cut(s) 139, 179, 356, 361
BsmI GAATGC 1 cut(s) 426
BsnI GGCC 3 cut(s) 104, 292, 614
Bso31I GGTCTC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 4 cut(s) 159, 242, 256, 316
BspACI CCGC 6 cut(s) 6, 77, 114, 226, 289, 740
BspANI GGCC 3 cut(s) 104, 292, 614
BspLI GGNNCC 2 cut(s) 161, 492
BspPI GGATC 3 cut(s) 154, 167, 251
BspTNI GGTCTC 1 cut(s) 143
BsrFI RCCGGY 2 cut(s) 79, 746
BssAI RCCGGY 2 cut(s) 79, 746
BssECI CCNNGG 2 cut(s) 201, 232
BssMI GATC 4 cut(s) 159, 242, 256, 316
BssNI GRCGYC 1 cut(s) 173
BssT1I CCWWGG 2 cut(s) 201, 232
Bst4CI ACNGT 1 cut(s) 518
Bst6I CTCTTC 2 cut(s) 545, 604
BstACI GRCGYC 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 40, 81
BstF5I GGATG 2 cut(s) 189, 316
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 4 cut(s) 162, 245, 259, 319
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 4 cut(s) 159, 242, 256, 316
BstMCI CGRYCG 1 cut(s) 293
BstMWI GCNNNNNNNGC 1 cut(s) 739
BstSCI CCNGG 3 cut(s) 133, 155, 162
BstSLI GKGCMC 1 cut(s) 40
BstX2I RGATCY 2 cut(s) 159, 256
BstYI RGATCY 2 cut(s) 159, 256
BstZI CGGCCG 1 cut(s) 290
BsuRI GGCC 3 cut(s) 104, 292, 614
BtsCI GGATG 2 cut(s) 189, 316
BtsI GCAGTG 1 cut(s) 772
BtsIMutI CAGTG 1 cut(s) 772
Cac8I GCNNGC 2 cut(s) 40, 81
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 2 cut(s) 79, 746
Cfr13I GGNCC 2 cut(s) 223, 612
CseI GACGC 1 cut(s) 162
CspAI ACCGGT 1 cut(s) 746
CviAII CATG 3 cut(s) 246, 437, 701
DpnI GATC 4 cut(s) 161, 244, 258, 318
DpnII GATC 4 cut(s) 159, 242, 256, 316
DraI TTTAAA 1 cut(s) 627
DriI GACNNNNNGTC 1 cut(s) 172
EaeI YGGCCR 2 cut(s) 102, 290
EagI CGGCCG 1 cut(s) 290
Eam1104I CTCTTC 2 cut(s) 545, 604
Eam1105I GACNNNNNGTC 1 cut(s) 172
EarI CTCTTC 2 cut(s) 545, 604
EciI GGCGGA 1 cut(s) 103
EclXI CGGCCG 1 cut(s) 290
Eco130I CCWWGG 2 cut(s) 201, 232
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 223
Eco52I CGGCCG 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 260
EcoT14I CCWWGG 2 cut(s) 201, 232
ErhI CCWWGG 2 cut(s) 201, 232
FaeI CATG 3 cut(s) 249, 440, 704
FaiI YATR 9 cut(s) 247, 438, 452, 456, 479, 483, 560, 702, 723
FaqI GGGAC 4 cut(s) 139, 179, 356, 361
FatI CATG 3 cut(s) 245, 436, 700
Fnu4HI GCNGC 1 cut(s) 290
FokI GGATG 2 cut(s) 176, 323
Fsp4HI GCNGC 1 cut(s) 290
FspBI CTAG 2 cut(s) 254, 297
GlaI GCGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 290
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 3 cut(s) 104, 292, 614
HapII CCGG 6 cut(s) 19, 80, 134, 157, 163, 747
HgaI GACGC 1 cut(s) 162
HhaI GCGC 1 cut(s) 96
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 3 cut(s) 249, 440, 704
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 1 cut(s) 679
HindII GTYRAC 1 cut(s) 679
HinfI GANTC 4 cut(s) 197, 206, 238, 250
HpaI GTTAAC 1 cut(s) 679
HpaII CCGG 6 cut(s) 19, 80, 134, 157, 163, 747
HphI GGTGA 7 cut(s) 66, 100, 190, 326, 506, 698, 729
Hpy166II GTNNAC 3 cut(s) 38, 267, 679
Hpy188I TCNGA 2 cut(s) 143, 284
Hpy188III TCNNGA 5 cut(s) 254, 260, 410, 494, 606
Hpy8I GTNNAC 3 cut(s) 38, 267, 679
Hpy99I CGWCG 3 cut(s) 178, 355, 612
HpyAV CCTTC 6 cut(s) 77, 352, 386, 679, 706, 744
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4V TGCA 3 cut(s) 38, 555, 777
HpyF10VI GCNNNNNNNGC 1 cut(s) 739
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 3 cut(s) 249, 440, 704
HspAI GCGC 1 cut(s) 94
KroI GCCGGC 1 cut(s) 79
KroNI GCCGGC 1 cut(s) 81
KspAI GTTAAC 1 cut(s) 679
Kzo9I GATC 4 cut(s) 159, 242, 256, 316
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 8 cut(s) 32, 93, 147, 170, 176, 507, 728, 760
MaeI CTAG 2 cut(s) 254, 297
MaeIII GTNAC 3 cut(s) 10, 503, 518
MalI GATC 4 cut(s) 161, 244, 258, 318
MboI GATC 4 cut(s) 159, 242, 256, 316
MboII GAAGA 2 cut(s) 532, 591
MfeI CAATTG 2 cut(s) 46, 810
MflI RGATCY 2 cut(s) 159, 256
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 46, 810
MlyI GAGTC 2 cut(s) 215, 244
MroNI GCCGGC 1 cut(s) 79
MseI TTAA 3 cut(s) 626, 678, 767
MspI CCGG 6 cut(s) 19, 80, 134, 157, 163, 747
MspR9I CCNGG 3 cut(s) 135, 157, 164
MunI CAATTG 2 cut(s) 46, 810
Mva1269I GAATGC 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 739
NaeI GCCGGC 1 cut(s) 81
NciI CCSGG 3 cut(s) 135, 157, 164
NdeII GATC 4 cut(s) 159, 242, 256, 316
NgoMIV GCCGGC 1 cut(s) 79
NlaIII CATG 3 cut(s) 249, 440, 704
NlaIV GGNNCC 2 cut(s) 161, 492
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 2 cut(s) 10, 503
PctI GAATGC 1 cut(s) 426
PdiI GCCGGC 1 cut(s) 81
PfeI GAWTC 2 cut(s) 197, 238
PfoI TCCNGGA 2 cut(s) 155, 162
PinAI ACCGGT 1 cut(s) 746
PkrI GCNGC 1 cut(s) 291
PleI GAGTC 2 cut(s) 214, 244
PpsI GAGTC 2 cut(s) 214, 244
PspN4I GGNNCC 2 cut(s) 161, 492
PspPI GGNCC 2 cut(s) 223, 612
PsuI RGATCY 2 cut(s) 159, 256
SaqAI TTAA 3 cut(s) 626, 678, 767
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 4 cut(s) 159, 242, 256, 316
Sau96I GGNCC 2 cut(s) 223, 612
SchI GAGTC 2 cut(s) 215, 244
ScrFI CCNGG 3 cut(s) 135, 157, 164
SduI GDGCHC 1 cut(s) 40
SetI ASST 9 cut(s) 113, 219, 366, 397, 467, 540, 698, 722, 792
SinI GGWCC 1 cut(s) 223
SmlI CTYRAG 2 cut(s) 408, 466
SmoI CTYRAG 2 cut(s) 408, 466
Sse9I AATT 2 cut(s) 46, 810
SsiI CCGC 6 cut(s) 6, 77, 114, 226, 289, 740
SspMI CTAG 2 cut(s) 254, 297
StyD4I CCNGG 3 cut(s) 133, 155, 162
StyI CCWWGG 2 cut(s) 201, 232
TaaI ACNGT 1 cut(s) 518
TaqI TCGA 4 cut(s) 195, 209, 241, 607
TasI AATT 2 cut(s) 46, 810
TauI GCSGC 1 cut(s) 292
TfiI GAWTC 2 cut(s) 197, 238
Tru1I TTAA 3 cut(s) 626, 678, 767
Tru9I TTAA 3 cut(s) 626, 678, 767
TscAI CASTG 1 cut(s) 779
TseFI GTSAC 2 cut(s) 10, 503
Tsp45I GTSAC 2 cut(s) 10, 503
TspDTI ATGAA 2 cut(s) 198, 705
TspGWI ACGGA 2 cut(s) 610, 674
TspRI CASTG 1 cut(s) 779
VneI GTGCAC 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 223
XbaI TCTAGA 1 cut(s) 253
XspI CTAG 2 cut(s) 254, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.