Rh6AG175600

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000182
Physical Location & Seq
Reverse (-)
28521508 .. 28522664
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG175600.1

Sequence Viewer

Length: 765 bp
ATGGTTATGGTTTCATATGAGGTTATCTTTGAGGTTTGTTTTAGATGTGGCTTATATAGACAGAAAGATCATAGCTGCCCTAGAAGGAATGTTAGGGATTGTTTTTTCATGGTTGAGTGGTTTGAAAATGAGAAGCAAGTCTATCCGGCTGAAATGGCAGACAATGAATTCATTAAACCCTTGCTCTCTAATGATATATCCATAGTGTTCCCGCAACCAATGTTCAACTATTTTGACTACAATGTTGAGCATCCTTCTGCTCAGACTGGTTCTGAGGATCAAGGTGGAGAGAATGGCCCTTGGAGGGTGGTGTCTCGTAGGGGCAAGGGAAAAGGAAACTTCTACCCAAAAAGTGGTGGGTTTGCTGCTGGACCAAATTATGGAAATGTCAAAGGATCCAATGTGGTACTTCCTGGGGTCTCCTTCAAAGATTTCACTCAAAGTAATGGTATTCTGAACTCGAAGAAGATAACGGAGAATCCAAAGGAATCTGTTGCAGCTGTTAATAAGCAGAAGGAAGTGATTTTGGTCTCCTCAGACTCTTCCCAAGAAGTTGAGCAGTATCAGGATGCTTTCGATCCACCCAAAATAGGCGACCTTGAGGACTTAGTCAACACTGCTGATCATGTTCCTGGTGCAGGGCCCAGTGGTGCTCCCCTTGTCTTTTTTAGCCCTAAAAAACAAACTAGACAAATGATTGAGATGATGGAAACTAGCAAGGATCAGGAACTAGGTTCATCCTCTAACCTTGCTCTTGTACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

254

Amino Acids

28.29

Weight (kDa)

5.13

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 353, 380
AciI CCGC 1 cut(s) 212
AclWI GGATC 5 cut(s) 285, 390, 403, 572, 729
AcsI RAATTY 1 cut(s) 167
AfaI GTAC 2 cut(s) 408, 759
AfiI CCNNNNNNNGG 5 cut(s) 304, 353, 380, 590, 638
AgsI TTSAA 3 cut(s) 125, 226, 427
AjnI CCWGG 2 cut(s) 412, 631
AluBI AGCT 2 cut(s) 75, 500
AluI AGCT 2 cut(s) 75, 500
Alw21I GWGCWC 1 cut(s) 655
Alw26I GTCTC 3 cut(s) 318, 424, 535
AlwI GGATC 5 cut(s) 285, 390, 403, 572, 729
AoxI GGCC 2 cut(s) 295, 641
ApaI GGGCCC 1 cut(s) 645
ApeKI GCWGC 3 cut(s) 75, 365, 497
ApoI RAATTY 1 cut(s) 167
AspS9I GGNCC 4 cut(s) 296, 371, 641, 642
AvaII GGWCC 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 645
BamHI GGATCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 655
BbvI GCAGC 3 cut(s) 62, 352, 509
BccI CCATC 1 cut(s) 700
BciT130I CCWGG 2 cut(s) 414, 633
BclI TGATCA 1 cut(s) 622
BcoDI GTCTC 3 cut(s) 318, 424, 535
BfaI CTAG 4 cut(s) 81, 687, 714, 731
BisI GCNGC 3 cut(s) 76, 366, 498
BlsI GCNGC 3 cut(s) 77, 367, 499
Bme1390I CCNGG 2 cut(s) 414, 633
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 4 cut(s) 296, 371, 641, 642
BmiI GGNNCC 2 cut(s) 397, 643
BmrFI CCNGG 2 cut(s) 414, 633
BmrI ACTGGG 1 cut(s) 639
BmsI GCATC 2 cut(s) 259, 559
BmuI ACTGGG 1 cut(s) 639
BpuEI CTTGAG 1 cut(s) 620
BsaI GGTCTC 2 cut(s) 424, 535
BsaJI CCNNGG 2 cut(s) 299, 413
Bsc4I CCNNNNNNNGG 5 cut(s) 304, 353, 380, 590, 638
Bse1I ACTGG 2 cut(s) 271, 645
BseBI CCWGG 2 cut(s) 414, 633
BseDI CCNNGG 2 cut(s) 299, 413
BseGI GGATG 3 cut(s) 250, 574, 737
BseLI CCNNNNNNNGG 5 cut(s) 304, 353, 380, 590, 638
BseMII CTCAG 3 cut(s) 264, 275, 549
BseNI ACTGG 2 cut(s) 271, 645
BseRI GAGGAG 1 cut(s) 523
BseSI GKGCMC 1 cut(s) 645
BseXI GCAGC 3 cut(s) 62, 352, 509
BsgI GTGCAG 1 cut(s) 657
BshFI GGCC 2 cut(s) 297, 643
BsiHKAI GWGCWC 1 cut(s) 655
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 5 cut(s) 304, 353, 380, 590, 638
BsmAI GTCTC 3 cut(s) 318, 424, 535
BsnI GGCC 2 cut(s) 297, 643
Bso31I GGTCTC 2 cut(s) 424, 535
Bsp120I GGGCCC 1 cut(s) 641
Bsp1286I GDGCHC 2 cut(s) 645, 655
Bsp143I GATC 6 cut(s) 67, 277, 395, 577, 622, 721
BspACI CCGC 1 cut(s) 212
BspANI GGCC 2 cut(s) 297, 643
BspCNI CTCAG 3 cut(s) 265, 274, 548
BspLI GGNNCC 2 cut(s) 397, 643
BspPI GGATC 5 cut(s) 285, 390, 403, 572, 729
BspTNI GGTCTC 2 cut(s) 424, 535
BsrI ACTGG 2 cut(s) 271, 645
BssECI CCNNGG 2 cut(s) 299, 413
BssMI GATC 6 cut(s) 67, 277, 395, 577, 622, 721
BssT1I CCWWGG 1 cut(s) 299
Bst2UI CCWGG 2 cut(s) 414, 633
Bst6I CTCTTC 1 cut(s) 547
BstDEI CTNAG 4 cut(s) 261, 273, 535, 607
BstENI CCTNNNNNAGG 1 cut(s) 636
BstF5I GGATG 3 cut(s) 250, 574, 737
BstKTI GATC 6 cut(s) 70, 280, 398, 580, 625, 724
BstMAI GTCTC 3 cut(s) 318, 424, 535
BstMBI GATC 6 cut(s) 67, 277, 395, 577, 622, 721
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 2 cut(s) 414, 633
BstSCI CCNGG 2 cut(s) 412, 631
BstSLI GKGCMC 1 cut(s) 645
BstV1I GCAGC 3 cut(s) 62, 352, 509
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BsuRI GGCC 2 cut(s) 297, 643
BtsCI GGATG 3 cut(s) 250, 574, 737
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 2 cut(s) 615, 652
Cfr13I GGNCC 4 cut(s) 296, 371, 641, 642
Csp6I GTAC 2 cut(s) 407, 758
CviAII CATG 3 cut(s) 109, 626, 762
CviJI RGCY 7 cut(s) 51, 75, 149, 297, 500, 643, 672
CviKI_1 RGCY 7 cut(s) 51, 75, 149, 297, 500, 643, 672
CviQI GTAC 2 cut(s) 407, 758
DdeI CTNAG 4 cut(s) 261, 273, 535, 607
DpnI GATC 6 cut(s) 69, 279, 397, 579, 624, 723
DpnII GATC 6 cut(s) 67, 277, 395, 577, 622, 721
Eam1104I CTCTTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 547
Eco130I CCWWGG 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 645
Eco31I GGTCTC 2 cut(s) 424, 535
Eco47I GGWCC 1 cut(s) 371
EcoNI CCTNNNNNAGG 1 cut(s) 636
EcoO109I RGGNCCY 1 cut(s) 641
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 412, 631
EcoT14I CCWWGG 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 3 cut(s) 112, 629, 765
FatI CATG 3 cut(s) 108, 625, 761
FauI CCCGC 1 cut(s) 219
FauNDI CATATG 1 cut(s) 16
FbaI TGATCA 1 cut(s) 622
Fnu4HI GCNGC 3 cut(s) 76, 366, 498
FokI GGATG 3 cut(s) 237, 581, 724
FriOI GRGCYC 1 cut(s) 645
Fsp4HI GCNGC 3 cut(s) 76, 366, 498
FspBI CTAG 4 cut(s) 81, 687, 714, 731
GluI GCNGC 3 cut(s) 76, 366, 498
HaeIII GGCC 2 cut(s) 297, 643
HapII CCGG 1 cut(s) 146
Hin1II CATG 3 cut(s) 112, 629, 765
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HinfI GANTC 3 cut(s) 478, 488, 539
HpaII CCGG 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 613
Hpy188I TCNGA 4 cut(s) 264, 274, 456, 538
Hpy188III TCNNGA 2 cut(s) 566, 725
Hpy8I GTNNAC 1 cut(s) 613
HpyAV CCTTC 4 cut(s) 78, 264, 433, 508
HpyCH4V TGCA 2 cut(s) 497, 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 4 cut(s) 261, 273, 535, 607
Hsp92II CATG 3 cut(s) 112, 629, 765
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 6 cut(s) 67, 277, 395, 577, 622, 721
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 3 cut(s) 62, 352, 509
LweI GCATC 2 cut(s) 259, 559
MaeI CTAG 4 cut(s) 81, 687, 714, 731
MalI GATC 6 cut(s) 69, 279, 397, 579, 624, 723
MboI GATC 6 cut(s) 67, 277, 395, 577, 622, 721
MboII GAAGA 3 cut(s) 475, 478, 534
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 2 cut(s) 645, 655
MluCI AATT 2 cut(s) 167, 376
MlyI GAGTC 1 cut(s) 533
MnlI CCTC 7 cut(s) 13, 25, 268, 297, 544, 595, 751
MseI TTAA 2 cut(s) 174, 504
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 414, 633
MvaI CCWGG 2 cut(s) 414, 633
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeI CATATG 1 cut(s) 16
NdeII GATC 6 cut(s) 67, 277, 395, 577, 622, 721
NlaIII CATG 3 cut(s) 112, 629, 765
NlaIV GGNNCC 2 cut(s) 397, 643
PfeI GAWTC 2 cut(s) 478, 488
PflFI GACNNNGTC 1 cut(s) 608
PflMI CCANNNNNTGG 2 cut(s) 353, 380
PkrI GCNGC 3 cut(s) 77, 367, 499
PleI GAGTC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 533
Psp6I CCWGG 2 cut(s) 412, 631
PspGI CCWGG 2 cut(s) 412, 631
PspN4I GGNNCC 2 cut(s) 397, 643
PspOMI GGGCCC 1 cut(s) 641
PspPI GGNCC 4 cut(s) 296, 371, 641, 642
PsuI RGATCY 1 cut(s) 395
PsyI GACNNNGTC 1 cut(s) 608
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 2 cut(s) 408, 759
RsaNI GTAC 2 cut(s) 407, 758
SaqAI TTAA 2 cut(s) 174, 504
SatI GCNGC 3 cut(s) 76, 366, 498
Sau3AI GATC 6 cut(s) 67, 277, 395, 577, 622, 721
Sau96I GGNCC 4 cut(s) 296, 371, 641, 642
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 2 cut(s) 414, 633
SduI GDGCHC 2 cut(s) 645, 655
SetI ASST 8 cut(s) 24, 36, 77, 286, 502, 600, 736, 750
SfaNI GCATC 2 cut(s) 259, 559
SinI GGWCC 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 2 cut(s) 167, 376
SsiI CCGC 1 cut(s) 212
SspMI CTAG 4 cut(s) 81, 687, 714, 731
StyD4I CCNGG 2 cut(s) 412, 631
StyI CCWWGG 1 cut(s) 299
TaqI TCGA 2 cut(s) 461, 576
TasI AATT 2 cut(s) 167, 376
TfiI GAWTC 2 cut(s) 478, 488
Tru1I TTAA 2 cut(s) 174, 504
Tru9I TTAA 2 cut(s) 174, 504
TscAI CASTG 2 cut(s) 622, 652
TseI GCWGC 3 cut(s) 75, 365, 497
TspDTI ATGAA 4 cut(s) 97, 160, 180, 726
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 2 cut(s) 622, 652
Tth111I GACNNNGTC 1 cut(s) 608
Van91I CCANNNNNTGG 2 cut(s) 353, 380
VpaK11BI GGWCC 1 cut(s) 371
XagI CCTNNNNNAGG 1 cut(s) 636
XapI RAATTY 1 cut(s) 167
XspI CTAG 4 cut(s) 81, 687, 714, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.