Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 65 - 146 | 1.2e-12 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 233 |
| Acc36I | ACCTGC | 1 cut(s) | 354 |
| AccIII | TCCGGA | 1 cut(s) | 411 |
| AclWI | GGATC | 1 cut(s) | 298 |
| AfaI | GTAC | 3 cut(s) | 121, 465, 568 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 442 |
| AgsI | TTSAA | 3 cut(s) | 64, 287, 433 |
| AjnI | CCWGG | 3 cut(s) | 366, 380, 459 |
| AluBI | AGCT | 1 cut(s) | 254 |
| AluI | AGCT | 1 cut(s) | 254 |
| Alw21I | GWGCWC | 2 cut(s) | 28, 192 |
| Alw26I | GTCTC | 3 cut(s) | 241, 449, 663 |
| AlwI | GGATC | 1 cut(s) | 298 |
| Aor13HI | TCCGGA | 1 cut(s) | 411 |
| AoxI | GGCC | 2 cut(s) | 377, 394 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 344, 376 |
| AspLEI | GCGC | 1 cut(s) | 278 |
| AspS9I | GGNCC | 3 cut(s) | 378, 394, 420 |
| AvaII | GGWCC | 1 cut(s) | 420 |
| AxyI | CCTNAGG | 1 cut(s) | 437 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 111, 144 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 504, 536 |
| BauI | CACGAG | 1 cut(s) | 21 |
| Bbv12I | GWGCWC | 2 cut(s) | 28, 192 |
| BciT130I | CCWGG | 3 cut(s) | 368, 382, 461 |
| BcoDI | GTCTC | 3 cut(s) | 241, 449, 663 |
| BfaI | CTAG | 3 cut(s) | 123, 243, 255 |
| BfmI | CTRYAG | 1 cut(s) | 347 |
| BfuAI | ACCTGC | 1 cut(s) | 354 |
| Bme1390I | CCNGG | 3 cut(s) | 368, 382, 461 |
| Bme18I | GGWCC | 1 cut(s) | 420 |
| BmgT120I | GGNCC | 3 cut(s) | 378, 394, 420 |
| BmrFI | CCNGG | 3 cut(s) | 368, 382, 461 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 613, 645 |
| BpmI | CTGGAG | 1 cut(s) | 523 |
| BsaI | GGTCTC | 3 cut(s) | 241, 449, 663 |
| BsaJI | CCNNGG | 2 cut(s) | 380, 459 |
| BsaWI | WCCGGW | 1 cut(s) | 411 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 442 |
| Bse1I | ACTGG | 2 cut(s) | 53, 506 |
| Bse21I | CCTNAGG | 1 cut(s) | 437 |
| BseAI | TCCGGA | 1 cut(s) | 411 |
| BseBI | CCWGG | 3 cut(s) | 368, 382, 461 |
| BseDI | CCNNGG | 2 cut(s) | 380, 459 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 442 |
| BseMII | CTCAG | 2 cut(s) | 428, 561 |
| BseNI | ACTGG | 2 cut(s) | 53, 506 |
| BseRI | GAGGAG | 2 cut(s) | 618, 677 |
| BshFI | GGCC | 2 cut(s) | 379, 396 |
| BsiHKAI | GWGCWC | 2 cut(s) | 28, 192 |
| BsiSI | CCGG | 1 cut(s) | 412 |
| BslFI | GGGAC | 1 cut(s) | 146 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 442 |
| BsmAI | GTCTC | 3 cut(s) | 241, 449, 663 |
| BsmFI | GGGAC | 1 cut(s) | 146 |
| BsnI | GGCC | 2 cut(s) | 379, 396 |
| Bso31I | GGTCTC | 3 cut(s) | 241, 449, 663 |
| Bsp1286I | GDGCHC | 2 cut(s) | 28, 192 |
| Bsp13I | TCCGGA | 1 cut(s) | 411 |
| Bsp143I | GATC | 1 cut(s) | 303 |
| BspANI | GGCC | 2 cut(s) | 379, 396 |
| BspCNI | CTCAG | 2 cut(s) | 429, 562 |
| BspEI | TCCGGA | 1 cut(s) | 411 |
| BspMAI | CTGCAG | 1 cut(s) | 351 |
| BspMI | ACCTGC | 1 cut(s) | 354 |
| BspPI | GGATC | 1 cut(s) | 298 |
| BspTNI | GGTCTC | 3 cut(s) | 241, 449, 663 |
| BsrI | ACTGG | 2 cut(s) | 53, 506 |
| BssECI | CCNNGG | 2 cut(s) | 380, 459 |
| BssMI | GATC | 1 cut(s) | 303 |
| BssSI | CACGAG | 1 cut(s) | 21 |
| Bst2BI | CACGAG | 1 cut(s) | 21 |
| Bst2UI | CCWGG | 3 cut(s) | 368, 382, 461 |
| Bst4CI | ACNGT | 2 cut(s) | 295, 678 |
| Bst6I | CTCTTC | 1 cut(s) | 654 |
| BstDEI | CTNAG | 3 cut(s) | 211, 437, 570 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 440 |
| BstHHI | GCGC | 1 cut(s) | 278 |
| BstKTI | GATC | 1 cut(s) | 306 |
| BstMAI | GTCTC | 3 cut(s) | 241, 449, 663 |
| BstMBI | GATC | 1 cut(s) | 303 |
| BstNI | CCWGG | 3 cut(s) | 368, 382, 461 |
| BstSCI | CCNGG | 3 cut(s) | 366, 380, 459 |
| BstSFI | CTRYAG | 1 cut(s) | 347 |
| Bsu36I | CCTNAGG | 1 cut(s) | 437 |
| BsuRI | GGCC | 2 cut(s) | 379, 396 |
| BtsIMutI | CAGTG | 1 cut(s) | 60 |
| BveI | ACCTGC | 1 cut(s) | 354 |
| CfoI | GCGC | 1 cut(s) | 278 |
| Cfr13I | GGNCC | 3 cut(s) | 378, 394, 420 |
| Csp6I | GTAC | 3 cut(s) | 120, 464, 567 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 97, 132 |
| CviAII | CATG | 3 cut(s) | 533, 607, 619 |
| CviQI | GTAC | 3 cut(s) | 120, 464, 567 |
| DdeI | CTNAG | 3 cut(s) | 211, 437, 570 |
| DpnI | GATC | 1 cut(s) | 305 |
| DpnII | GATC | 1 cut(s) | 303 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 233 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 233 |
| Eam1104I | CTCTTC | 1 cut(s) | 654 |
| EarI | CTCTTC | 1 cut(s) | 654 |
| Eco31I | GGTCTC | 3 cut(s) | 241, 449, 663 |
| Eco47I | GGWCC | 1 cut(s) | 420 |
| Eco81I | CCTNAGG | 1 cut(s) | 437 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 440 |
| EcoO109I | RGGNCCY | 1 cut(s) | 378 |
| EcoRII | CCWGG | 3 cut(s) | 366, 380, 459 |
| FaeI | CATG | 3 cut(s) | 536, 610, 622 |
| FaiI | YATR | 8 cut(s) | 176, 408, 521, 534, 588, 608, 620, 650 |
| FaqI | GGGAC | 1 cut(s) | 146 |
| FatI | CATG | 3 cut(s) | 532, 606, 618 |
| FspBI | CTAG | 3 cut(s) | 123, 243, 255 |
| GlaI | GCGC | 1 cut(s) | 277 |
| GsuI | CTGGAG | 1 cut(s) | 523 |
| HaeIII | GGCC | 2 cut(s) | 379, 396 |
| HapII | CCGG | 1 cut(s) | 412 |
| HhaI | GCGC | 1 cut(s) | 278 |
| Hin1II | CATG | 3 cut(s) | 536, 610, 622 |
| Hin6I | GCGC | 1 cut(s) | 276 |
| HinP1I | GCGC | 1 cut(s) | 276 |
| HinfI | GANTC | 2 cut(s) | 399, 625 |
| HpaII | CCGG | 1 cut(s) | 412 |
| Hpy166II | GTNNAC | 1 cut(s) | 157 |
| Hpy188I | TCNGA | 1 cut(s) | 633 |
| Hpy188III | TCNNGA | 1 cut(s) | 412 |
| Hpy8I | GTNNAC | 1 cut(s) | 157 |
| HpyAV | CCTTC | 2 cut(s) | 226, 497 |
| HpyCH4III | ACNGT | 2 cut(s) | 295, 678 |
| HpyCH4IV | ACGT | 3 cut(s) | 159, 354, 565 |
| HpyCH4V | TGCA | 6 cut(s) | 20, 264, 349, 496, 596, 606 |
| HpyF3I | CTNAG | 3 cut(s) | 211, 437, 570 |
| HpySE526I | ACGT | 3 cut(s) | 159, 354, 565 |
| Hsp92II | CATG | 3 cut(s) | 536, 610, 622 |
| HspAI | GCGC | 1 cut(s) | 276 |
| Kpn2I | TCCGGA | 1 cut(s) | 411 |
| Kzo9I | GATC | 1 cut(s) | 303 |
| LmnI | GCTCC | 2 cut(s) | 187, 504 |
| MaeI | CTAG | 3 cut(s) | 123, 243, 255 |
| MaeII | ACGT | 3 cut(s) | 159, 354, 565 |
| MaeIII | GTNAC | 1 cut(s) | 103 |
| MalI | GATC | 1 cut(s) | 305 |
| MboI | GATC | 1 cut(s) | 303 |
| MboII | GAAGA | 3 cut(s) | 275, 394, 671 |
| MhlI | GDGCHC | 2 cut(s) | 28, 192 |
| MluCI | AATT | 3 cut(s) | 199, 537, 583 |
| MlyI | GAGTC | 1 cut(s) | 619 |
| MroI | TCCGGA | 1 cut(s) | 411 |
| MspI | CCGG | 1 cut(s) | 412 |
| MspR9I | CCNGG | 3 cut(s) | 368, 382, 461 |
| MvaI | CCWGG | 3 cut(s) | 368, 382, 461 |
| NdeII | GATC | 1 cut(s) | 303 |
| NlaIII | CATG | 3 cut(s) | 536, 610, 622 |
| PfeI | GAWTC | 1 cut(s) | 399 |
| PfoI | TCCNGGA | 1 cut(s) | 366 |
| PleI | GAGTC | 1 cut(s) | 619 |
| PpsI | GAGTC | 1 cut(s) | 619 |
| Psp6I | CCWGG | 3 cut(s) | 366, 380, 459 |
| PspGI | CCWGG | 3 cut(s) | 366, 380, 459 |
| PspPI | GGNCC | 3 cut(s) | 378, 394, 420 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 456, 488 |
| PstI | CTGCAG | 1 cut(s) | 351 |
| RsaI | GTAC | 3 cut(s) | 121, 465, 568 |
| RsaNI | GTAC | 3 cut(s) | 120, 464, 567 |
| Sau3AI | GATC | 1 cut(s) | 303 |
| Sau96I | GGNCC | 3 cut(s) | 378, 394, 420 |
| SbfI | CCTGCAGG | 1 cut(s) | 351 |
| SchI | GAGTC | 1 cut(s) | 619 |
| ScrFI | CCNGG | 3 cut(s) | 368, 382, 461 |
| SdaI | CCTGCAGG | 1 cut(s) | 351 |
| SduI | GDGCHC | 2 cut(s) | 28, 192 |
| SfcI | CTRYAG | 1 cut(s) | 347 |
| SinI | GGWCC | 1 cut(s) | 420 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 351 |
| Sse9I | AATT | 3 cut(s) | 199, 537, 583 |
| SspMI | CTAG | 3 cut(s) | 123, 243, 255 |
| StyD4I | CCNGG | 3 cut(s) | 366, 380, 459 |
| TaaI | ACNGT | 2 cut(s) | 295, 678 |
| TaiI | ACGT | 3 cut(s) | 162, 357, 568 |
| TasI | AATT | 3 cut(s) | 199, 537, 583 |
| TfiI | GAWTC | 1 cut(s) | 399 |
| TscAI | CASTG | 1 cut(s) | 60 |
| TspDTI | ATGAA | 2 cut(s) | 521, 576 |
| TspRI | CASTG | 1 cut(s) | 60 |
| VpaK11BI | GGWCC | 1 cut(s) | 420 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 440 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 314 |
| XspI | CTAG | 3 cut(s) | 123, 243, 255 |