Rmu_sc0003693.1_g000028

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003693.1
OG0000182
Physical Location & Seq
Reverse (-)
102535 .. 103680
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003693.1_g000028.1.cds

Sequence Viewer

Length: 816 bp
atgtgccaactcgtcaatgggtggtactcactggagttcacctatctccaagatgttgattttgtgctagataatagactgtggtttgtcaaaggcagaatctctcatattagaggatggtcccctaactttgatacacgtattgcaaaaatcgaaactctgatcctttgggtgcagcttccaaatctccccattcagttctggaacaagaatgcaattcaactgattaccaaggtcctgggtcgtttcatcaagctagatgaaatgactgagttcagtgaaaactacatctttgcttgtgtttacatggaaattgatcttcgcaccccgctgaaaaggactctaattgtctgcgaagaagatgaaggggatctccctttcaatttgcacagaatcagaaacttttttatgaggaagaaagaacaacactttgtcctggttgataaagagcaaggcgatgatgatgttgtaccacaagacatggaggtggaccctgagattaaagagttggttagtgaaaatgtgatggtttacttccctcagcccgctaaaggagacttggaggccgagcttgaggagtttgaaaactttagtgatgctagggcttttgacctcatgaaggatagtggggacaatctgaatgagtatgaagttaaggtgatcaatggcaaaagggtgattatgatagctgaaagtgactctgcaatgagctctggcccgaagaaaaggacgagggaaatggctgaagatcagactatggatgtggcacaggatgaggaggacaacgcctcttcaccaaagatggccaaaccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

271

Amino Acids

31.65

Weight (kDa)

4.62

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 329, 546
AclWI GGATC 2 cut(s) 157, 378
AcoI YGGCCR 1 cut(s) 804
AcuI CTGAAG 1 cut(s) 765
AfaI GTAC 2 cut(s) 26, 471
AfiI CCNNNNNNNGG 2 cut(s) 551, 619
AflIII ACRYGT 1 cut(s) 137
AgsI TTSAA 3 cut(s) 221, 382, 584
AjnI CCWGG 2 cut(s) 237, 435
AluBI AGCT 5 cut(s) 178, 256, 571, 689, 711
AluI AGCT 5 cut(s) 178, 256, 571, 689, 711
Alw21I GWGCWC 1 cut(s) 713
Alw26I GTCTC 1 cut(s) 549
AlwI GGATC 2 cut(s) 157, 378
AoxI GGCC 3 cut(s) 564, 715, 804
ApeKI GCWGC 1 cut(s) 175
AspS9I GGNCC 4 cut(s) 120, 235, 490, 716
AsuHPI GGTGA 4 cut(s) 31, 670, 688, 786
AvaII GGWCC 3 cut(s) 120, 235, 490
BalI TGGCCA 1 cut(s) 806
BanII GRGCYC 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 713
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 187
BccI CCATC 3 cut(s) 111, 520, 796
BciT130I CCWGG 2 cut(s) 239, 437
BclI TGATCA 1 cut(s) 660
BcoDI GTCTC 1 cut(s) 549
BfaI CTAG 3 cut(s) 68, 257, 600
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme1390I CCNGG 2 cut(s) 239, 437
Bme18I GGWCC 3 cut(s) 120, 235, 490
BmgT120I GGNCC 4 cut(s) 120, 235, 490, 716
BmiI GGNNCC 2 cut(s) 122, 492
BmrFI CCNGG 2 cut(s) 239, 437
BmsI GCATC 1 cut(s) 586
BpmI CTGGAG 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 593
BsaAI YACGTR 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 231, 238
Bsc4I CCNNNNNNNGG 2 cut(s) 551, 619
Bse1I ACTGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 711
BseBI CCWGG 2 cut(s) 239, 437
BseDI CCNNGG 2 cut(s) 231, 238
BseGI GGATG 3 cut(s) 122, 766, 778
BseLI CCNNNNNNNGG 2 cut(s) 551, 619
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 3 cut(s) 261, 486, 554
BseNI ACTGG 1 cut(s) 36
BseRI GAGGAG 2 cut(s) 590, 791
BseXI GCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 194
BshFI GGCC 3 cut(s) 566, 717, 806
BsiHKAI GWGCWC 1 cut(s) 713
BslFI GGGAC 2 cut(s) 106, 644
BslI CCNNNNNNNGG 2 cut(s) 551, 619
BsmAI GTCTC 1 cut(s) 549
BsmFI GGGAC 2 cut(s) 106, 644
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 3 cut(s) 566, 717, 806
Bsp1286I GDGCHC 1 cut(s) 713
Bsp143I GATC 5 cut(s) 162, 316, 370, 660, 748
BspACI CCGC 2 cut(s) 329, 546
BspANI GGCC 3 cut(s) 566, 717, 806
BspCNI CTCAG 3 cut(s) 262, 487, 553
BspHI TCATGA 1 cut(s) 615
BspLI GGNNCC 2 cut(s) 122, 492
BspPI GGATC 2 cut(s) 157, 378
BsrDI GCAATG 1 cut(s) 711
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 231, 238
BssMI GATC 5 cut(s) 162, 316, 370, 660, 748
BssT1I CCWWGG 1 cut(s) 231
Bst2UI CCWGG 2 cut(s) 239, 437
Bst4CI ACNGT 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 796
BstBAI YACGTR 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 3 cut(s) 270, 495, 540
BstENI CCTNNNNNAGG 1 cut(s) 617
BstF5I GGATG 3 cut(s) 122, 766, 778
BstKTI GATC 5 cut(s) 165, 319, 373, 663, 751
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 5 cut(s) 162, 316, 370, 660, 748
BstNI CCWGG 2 cut(s) 239, 437
BstSCI CCNGG 2 cut(s) 237, 435
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 370
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 3 cut(s) 566, 717, 806
BtgZI GCGATG 1 cut(s) 471
BtsCI GGATG 3 cut(s) 122, 766, 778
BtsIMutI CAGTG 2 cut(s) 29, 283
Cac8I GCNNGC 1 cut(s) 546
CciI TCATGA 1 cut(s) 615
Cfr13I GGNCC 4 cut(s) 120, 235, 490, 716
Csp6I GTAC 2 cut(s) 25, 470
CviAII CATG 4 cut(s) 307, 481, 616, 813
CviQI GTAC 2 cut(s) 25, 470
DdeI CTNAG 3 cut(s) 270, 495, 540
DpnI GATC 5 cut(s) 164, 318, 372, 662, 750
DpnII GATC 5 cut(s) 162, 316, 370, 660, 748
EaeI YGGCCR 1 cut(s) 804
Eam1104I CTCTTC 1 cut(s) 796
EarI CTCTTC 1 cut(s) 796
Ecl136II GAGCTC 1 cut(s) 711
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 713
Eco47I GGWCC 3 cut(s) 120, 235, 490
Eco53kI GAGCTC 1 cut(s) 711
Eco57I CTGAAG 1 cut(s) 765
EcoICRI GAGCTC 1 cut(s) 711
EcoNI CCTNNNNNAGG 1 cut(s) 617
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 2 cut(s) 237, 435
EcoT14I CCWWGG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 713
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 4 cut(s) 310, 484, 619, 816
FaiI YATR 9 cut(s) 108, 308, 410, 482, 617, 648, 683, 758, 814
FaqI GGGAC 2 cut(s) 106, 644
FatI CATG 4 cut(s) 306, 480, 615, 812
FauI CCCGC 2 cut(s) 336, 553
FbaI TGATCA 1 cut(s) 660
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 3 cut(s) 129, 773, 785
FriOI GRGCYC 1 cut(s) 713
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 3 cut(s) 68, 257, 600
GluI GCNGC 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 3 cut(s) 566, 717, 806
Hin1II CATG 4 cut(s) 310, 484, 619, 816
HinfI GANTC 4 cut(s) 99, 340, 393, 698
HphI GGTGA 4 cut(s) 31, 670, 688, 786
Hpy166II GTNNAC 4 cut(s) 39, 304, 490, 532
Hpy188I TCNGA 4 cut(s) 162, 398, 639, 753
Hpy188III TCNNGA 2 cut(s) 202, 616
Hpy8I GTNNAC 4 cut(s) 39, 304, 490, 532
HpyAV CCTTC 2 cut(s) 359, 613
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 5 cut(s) 146, 175, 215, 388, 704
HpyF3I CTNAG 3 cut(s) 270, 495, 540
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 4 cut(s) 310, 484, 619, 816
Ksp22I TGATCA 1 cut(s) 660
Kzo9I GATC 5 cut(s) 162, 316, 370, 660, 748
LpnPI CCDG 9 cut(s) 17, 187, 224, 251, 422, 449, 507, 699, 755
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 586
MaeI CTAG 3 cut(s) 68, 257, 600
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 695
MalI GATC 5 cut(s) 164, 318, 372, 662, 750
MboI GATC 5 cut(s) 162, 316, 370, 660, 748
MboII GAAGA 7 cut(s) 311, 368, 371, 427, 733, 758, 783
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 713
MlsI TGGCCA 1 cut(s) 806
MluCI AATT 4 cut(s) 216, 312, 345, 382
MluNI TGGCCA 1 cut(s) 806
MlyI GAGTC 2 cut(s) 334, 692
Mox20I TGGCCA 1 cut(s) 806
MscI TGGCCA 1 cut(s) 806
MseI TTAA 2 cut(s) 501, 654
MslI CAYNNNNRTG 1 cut(s) 485
Msp20I TGGCCA 1 cut(s) 806
MspA1I CMGCKG 1 cut(s) 331
MspR9I CCNGG 2 cut(s) 239, 437
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 2 cut(s) 239, 437
NdeII GATC 5 cut(s) 162, 316, 370, 660, 748
NlaIII CATG 4 cut(s) 310, 484, 619, 816
NlaIV GGNNCC 2 cut(s) 122, 492
NmeAIII GCCGAG 1 cut(s) 592
NmuCI GTSAC 1 cut(s) 695
PagI TCATGA 1 cut(s) 615
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 99, 393
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 2 cut(s) 334, 692
PpsI GAGTC 2 cut(s) 334, 692
Ppu21I YACGTR 1 cut(s) 140
PpuMI RGGWCCY 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 713
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 2 cut(s) 237, 435
PspGI CCWGG 2 cut(s) 237, 435
PspN4I GGNNCC 2 cut(s) 122, 492
PspPI GGNCC 4 cut(s) 120, 235, 490, 716
PspPPI RGGWCCY 1 cut(s) 235
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 2 cut(s) 26, 471
RsaNI GTAC 2 cut(s) 25, 470
RseI CAYNNNNRTG 1 cut(s) 485
SacI GAGCTC 1 cut(s) 713
SaqAI TTAA 2 cut(s) 501, 654
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 5 cut(s) 162, 316, 370, 660, 748
Sau96I GGNCC 4 cut(s) 120, 235, 490, 716
SchI GAGTC 2 cut(s) 334, 692
ScrFI CCNGG 2 cut(s) 239, 437
SduI GDGCHC 1 cut(s) 713
SfaNI GCATC 1 cut(s) 586
SinI GGWCC 3 cut(s) 120, 235, 490
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
Sse9I AATT 4 cut(s) 216, 312, 345, 382
SsiI CCGC 2 cut(s) 329, 546
SspMI CTAG 3 cut(s) 68, 257, 600
SstI GAGCTC 1 cut(s) 713
StyD4I CCNGG 2 cut(s) 237, 435
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 81
TaiI ACGT 1 cut(s) 142
TaqI TCGA 1 cut(s) 153
TasI AATT 4 cut(s) 216, 312, 345, 382
TfiI GAWTC 2 cut(s) 99, 393
Tru1I TTAA 2 cut(s) 501, 654
Tru9I TTAA 2 cut(s) 501, 654
TscAI CASTG 2 cut(s) 36, 283
TseFI GTSAC 1 cut(s) 695
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 695
TspDTI ATGAA 5 cut(s) 238, 276, 378, 632, 663
TspRI CASTG 2 cut(s) 36, 283
VpaK11BI GGWCC 3 cut(s) 120, 235, 490
XagI CCTNNNNNAGG 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 14
XspI CTAG 3 cut(s) 68, 257, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.