Rh2CG356300

Calcium-dependent channel, 7TM region, putative phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000182
Physical Location & Seq
Forward (+)
48273991 .. 48275310
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG356300.1

Sequence Viewer

Length: 405 bp
ATGAACCCTGGAAGTTTGATAGCTTCGGCGGCCATAAACATAGGCTTGGCCATCGTGATTCTCTCACTCTTCTCCATCCTCAAGAAGCAACCCTCGTACGTCCCTATCTACTACCCTCGACGCCTTTCTCAATCGCAGTCGTCGCAGCGCCATTGCCACAACATTTCGATGAATCCCTTATTCTCCGCTGCTTCCTCCCTTCCCACTTCTGGATTTGTAGCCATTACCGCGTCTCCGAGGATGAGATCCTCAAGACCAGTGGCCTCGATGCCCTCATCATCATCAGTCTTTTTTTTTTTTTTGTCTGAATCATCAGGCTCTTCAAGATGGGCTTGCCGTCCTTTTCCTGGTTGTGGATCTTGTAGGTGGGCAAAGATGGAGAGAAGAAGGCGAATTTGGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

134

Amino Acids

14.82

Weight (kDa)

11.51

Isoelectric Point (pI)

110.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 230
AciI CCGC 3 cut(s) 29, 186, 228
AclWI GGATC 2 cut(s) 240, 364
AcoI YGGCCR 2 cut(s) 30, 48
AcsI RAATTY 1 cut(s) 393
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 3 cut(s) 209, 347, 353
AgsI TTSAA 1 cut(s) 324
AjnI CCWGG 2 cut(s) 7, 346
AjuI GAANNNNNNNTTGG 1 cut(s) 379
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 2 cut(s) 240, 364
AoxI GGCC 3 cut(s) 30, 48, 261
ApeKI GCWGC 2 cut(s) 145, 188
ApoI RAATTY 1 cut(s) 393
AspLEI GCGC 1 cut(s) 150
BalI TGGCCA 1 cut(s) 50
BbvI GCAGC 2 cut(s) 157, 175
BccI CCATC 4 cut(s) 59, 83, 321, 370
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 2 cut(s) 9, 348
BcoDI GTCTC 1 cut(s) 237
BfoI RGCGCY 1 cut(s) 151
BisI GCNGC 3 cut(s) 30, 146, 189
BlsI GCNGC 3 cut(s) 31, 147, 190
Bme1390I CCNGG 2 cut(s) 9, 348
BmrFI CCNGG 2 cut(s) 9, 348
BmsI GCATC 1 cut(s) 258
BpuEI CTTGAG 2 cut(s) 65, 235
BsaHI GRCGYC 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 7, 236
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 347, 353
Bse1I ACTGG 1 cut(s) 257
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 2 cut(s) 9, 348
BseDI CCNNGG 2 cut(s) 7, 236
BseGI GGATG 2 cut(s) 75, 246
BseLI CCNNNNNNNGG 3 cut(s) 209, 347, 353
BseMI GCAATG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 257
BseXI GCAGC 2 cut(s) 157, 175
Bsh1236I CGCG 1 cut(s) 230
BshFI GGCC 3 cut(s) 32, 50, 263
BsiWI CGTACG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 3 cut(s) 209, 347, 353
BsmAI GTCTC 1 cut(s) 237
BsmBI CGTCTC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 3 cut(s) 32, 50, 263
Bsp143I GATC 2 cut(s) 245, 356
BspACI CCGC 3 cut(s) 29, 186, 228
BspANI GGCC 3 cut(s) 32, 50, 263
BspFNI CGCG 1 cut(s) 230
BspPI GGATC 2 cut(s) 240, 364
BspQI GCTCTTC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 7, 236
BssMI GATC 2 cut(s) 245, 356
BssNI GRCGYC 1 cut(s) 121
Bst2UI CCWGG 2 cut(s) 9, 348
Bst6I CTCTTC 2 cut(s) 74, 325
BstACI GRCGYC 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 334
BstF5I GGATG 2 cut(s) 75, 246
BstFNI CGCG 1 cut(s) 230
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 2 cut(s) 248, 359
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 2 cut(s) 245, 356
BstMWI GCNNNNNNNGC 4 cut(s) 29, 142, 227, 397
BstNI CCWGG 2 cut(s) 9, 348
BstSCI CCNGG 2 cut(s) 7, 346
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 157, 175
BstX2I RGATCY 2 cut(s) 245, 356
BstYI RGATCY 2 cut(s) 245, 356
BsuRI GGCC 3 cut(s) 32, 50, 263
BtsCI GGATG 2 cut(s) 75, 246
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 334
CfoI GCGC 1 cut(s) 150
CseI GACGC 2 cut(s) 129, 219
Csp6I GTAC 1 cut(s) 97
CspCI CAANNNNNGTGG 2 cut(s) 240, 275
CviJI RGCY 9 cut(s) 23, 32, 45, 50, 221, 263, 318, 332, 400
CviKI_1 RGCY 9 cut(s) 23, 32, 45, 50, 221, 263, 318, 332, 400
CviQI GTAC 1 cut(s) 97
DpnI GATC 2 cut(s) 247, 358
DpnII GATC 2 cut(s) 245, 356
EaeI YGGCCR 2 cut(s) 30, 48
Eam1104I CTCTTC 2 cut(s) 74, 325
EarI CTCTTC 2 cut(s) 74, 325
EcoRII CCWGG 2 cut(s) 7, 346
Esp3I CGTCTC 1 cut(s) 237
FaiI YATR 2 cut(s) 35, 41
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FaqI GGGAC 1 cut(s) 86
Fnu4HI GCNGC 3 cut(s) 30, 146, 189
FokI GGATG 2 cut(s) 62, 253
Fsp4HI GCNGC 3 cut(s) 30, 146, 189
GlaI GCGC 1 cut(s) 149
GluI GCNGC 3 cut(s) 30, 146, 189
HaeII RGCGCY 1 cut(s) 151
HaeIII GGCC 3 cut(s) 32, 50, 263
HgaI GACGC 2 cut(s) 129, 219
HhaI GCGC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 121
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HinfI GANTC 3 cut(s) 58, 172, 308
Hpy188I TCNGA 2 cut(s) 237, 307
Hpy188III TCNNGA 5 cut(s) 55, 82, 210, 252, 324
Hpy99I CGWCG 2 cut(s) 123, 145
HpyAV CCTTC 2 cut(s) 209, 381
HpyCH4IV ACGT 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 142, 227, 397
HpySE526I ACGT 1 cut(s) 99
Hsp92I GRCGYC 1 cut(s) 121
HspAI GCGC 1 cut(s) 148
Kzo9I GATC 2 cut(s) 245, 356
LguI GCTCTTC 1 cut(s) 325
LpnPI CCDG 6 cut(s) 21, 195, 270, 300, 333, 360
Lsp1109I GCAGC 2 cut(s) 157, 175
LweI GCATC 1 cut(s) 258
MaeII ACGT 1 cut(s) 99
MalI GATC 2 cut(s) 247, 358
MboI GATC 2 cut(s) 245, 356
MboII GAAGA 3 cut(s) 61, 312, 396
MflI RGATCY 2 cut(s) 245, 356
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 1 cut(s) 393
MluNI TGGCCA 1 cut(s) 50
MnlI CCTC 8 cut(s) 89, 103, 126, 205, 231, 259, 274, 283
Mox20I TGGCCA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 9, 348
MvaI CCWGG 2 cut(s) 9, 348
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 4 cut(s) 29, 142, 227, 397
NdeII GATC 2 cut(s) 245, 356
PciSI GCTCTTC 1 cut(s) 325
PfeI GAWTC 3 cut(s) 58, 172, 308
Pfl23II CGTACG 1 cut(s) 96
PkrI GCNGC 3 cut(s) 31, 147, 190
Psp6I CCWGG 2 cut(s) 7, 346
PspGI CCWGG 2 cut(s) 7, 346
PspLI CGTACG 1 cut(s) 96
PsuI RGATCY 2 cut(s) 245, 356
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 325
SatI GCNGC 3 cut(s) 30, 146, 189
Sau3AI GATC 2 cut(s) 245, 356
ScrFI CCNGG 2 cut(s) 9, 348
SetI ASST 3 cut(s) 25, 102, 368
SfaNI GCATC 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 2 cut(s) 80, 250
SmoI CTYRAG 2 cut(s) 80, 250
Sse9I AATT 1 cut(s) 393
SsiI CCGC 3 cut(s) 29, 186, 228
StyD4I CCNGG 2 cut(s) 7, 346
TaiI ACGT 1 cut(s) 102
TaqI TCGA 3 cut(s) 118, 167, 266
TasI AATT 1 cut(s) 393
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 3 cut(s) 58, 172, 308
TscAI CASTG 1 cut(s) 264
TseI GCWGC 2 cut(s) 145, 188
TspDTI ATGAA 2 cut(s) 17, 185
TspRI CASTG 1 cut(s) 264
XapI RAATTY 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.