Rh3BG360400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000182
Physical Location & Seq
Forward (+)
43505412 .. 43506436
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG360400.1

Sequence Viewer

Length: 510 bp
ATGCCCCTACCTATGTTGACCTGCTTAGTCGGAAAGCTTTTTGGGAAGAAGCTCCCTGCTGAGGTGGTGCTTAACAAGTGTACTGATATGTGGGCCAATTTTGAGGGTAACTTCCAAATCAAGTGGCTTATCAACCACTGCCTCCTCTTGCATCGAAAACCTTATTGTTTGGACCACTTCTCTCTAGTTTTTCCCCAACCAATCACTGCCCCTGTTCCTAAGGAGGCTGACAACTCCAATGAAGGAGCTTCCTGGAAAGTTGTTTCTAGAAAAGTTAAAGGTAAGGGCTTCCATTATCCCAAAAATGAATTCATCCCCGAAAGGCGCCAGGCTTTGATCTTGCCAGGAAAAACTTTTAAGGAGTCAGTTGACCCTATGGCTGCAGGCCCCTCTAAGGCCAAAAACCAAGAAATTGTGGTGGTTTCTGATAACTCTTCTCAAGAGGTAGACCAATATATAGATGCTAAGGAAACCCTTAAGGCTGGTGATTGGGGATCAAGCTGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.01

Weight (kDa)

8.84

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 324
AccI GTMKAC 1 cut(s) 447
AclWI GGATC 1 cut(s) 502
AcsI RAATTY 1 cut(s) 308
AcyI GRCGYC 1 cut(s) 325
AfaI GTAC 1 cut(s) 82
AfiI CCNNNNNNNGG 2 cut(s) 61, 394
AflII CTTAAG 1 cut(s) 476
AjnI CCWGG 3 cut(s) 251, 327, 343
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AluBI AGCT 4 cut(s) 37, 52, 248, 501
AluI AGCT 4 cut(s) 37, 52, 248, 501
AlwI GGATC 1 cut(s) 502
AoxI GGCC 3 cut(s) 93, 385, 396
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 1 cut(s) 308
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 3 cut(s) 93, 172, 386
AsuHPI GGTGA 1 cut(s) 497
AvaII GGWCC 1 cut(s) 172
AxyI CCTNAGG 1 cut(s) 219
BanI GGYRCC 1 cut(s) 324
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 367
BciT130I CCWGG 3 cut(s) 253, 329, 345
BfaI CTAG 2 cut(s) 185, 267
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 328
BfrI CTTAAG 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 29
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 3 cut(s) 253, 329, 345
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 3 cut(s) 93, 172, 386
BmiI GGNNCC 2 cut(s) 326, 388
BmrFI CCNGG 3 cut(s) 253, 329, 345
BmsI GCATC 2 cut(s) 160, 451
Bpu10I CCTNAGC 2 cut(s) 60, 465
BpuEI CTTGAG 1 cut(s) 423
BsaHI GRCGYC 1 cut(s) 325
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 394
Bse21I CCTNAGG 1 cut(s) 219
BseBI CCWGG 3 cut(s) 253, 329, 345
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 61, 394
BseMII CTCAG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 367
BshFI GGCC 3 cut(s) 95, 387, 398
BshNI GGYRCC 1 cut(s) 324
BslI CCNNNNNNNGG 2 cut(s) 61, 394
BsnI GGCC 3 cut(s) 95, 387, 398
Bsp143I GATC 2 cut(s) 336, 494
BspANI GGCC 3 cut(s) 95, 387, 398
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 2 cut(s) 326, 388
BspMAI CTGCAG 1 cut(s) 385
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 1 cut(s) 502
BspT107I GGYRCC 1 cut(s) 324
BspTI CTTAAG 1 cut(s) 476
BssMI GATC 2 cut(s) 336, 494
BssNI GRCGYC 1 cut(s) 325
Bst2UI CCWGG 3 cut(s) 253, 329, 345
Bst6I CTCTTC 1 cut(s) 439
BstACI GRCGYC 1 cut(s) 325
BstAFI CTTAAG 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 5 cut(s) 25, 60, 219, 393, 465
BstF5I GGATG 1 cut(s) 312
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 2 cut(s) 339, 497
BstMBI GATC 2 cut(s) 336, 494
BstNI CCWGG 3 cut(s) 253, 329, 345
BstSCI CCNGG 3 cut(s) 251, 327, 343
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 367
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 3 cut(s) 95, 387, 398
BtsCI GGATG 1 cut(s) 312
BtsI GCAGTG 2 cut(s) 136, 204
BtsIMutI CAGTG 2 cut(s) 136, 204
BveI ACCTGC 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 385
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 3 cut(s) 93, 172, 386
Csp6I GTAC 1 cut(s) 81
CspCI CAANNNNNGTGG 2 cut(s) 104, 139
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 5 cut(s) 25, 60, 219, 393, 465
DinI GGCGCC 1 cut(s) 326
DpnI GATC 2 cut(s) 338, 496
DpnII GATC 2 cut(s) 336, 494
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 172
Eco81I CCTNAGG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 386
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 3 cut(s) 251, 327, 343
EgeI GGCGCC 1 cut(s) 326
EheI GGCGCC 1 cut(s) 326
FaiI YATR 5 cut(s) 14, 89, 377, 456, 458
FblI GTMKAC 1 cut(s) 447
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 2 cut(s) 185, 267
GlaI GCGC 1 cut(s) 326
GluI GCNGC 1 cut(s) 381
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 3 cut(s) 95, 387, 398
HhaI GCGC 1 cut(s) 327
Hin1I GRCGYC 1 cut(s) 325
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HincII GTYRAC 2 cut(s) 18, 370
HindII GTYRAC 2 cut(s) 18, 370
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 1 cut(s) 362
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 4 cut(s) 18, 81, 370, 448
Hpy188I TCNGA 2 cut(s) 32, 427
Hpy188III TCNNGA 2 cut(s) 267, 440
Hpy8I GTNNAC 4 cut(s) 18, 81, 370, 448
HpyAV CCTTC 1 cut(s) 236
HpyCH4V TGCA 2 cut(s) 151, 383
HpyF3I CTNAG 5 cut(s) 25, 60, 219, 393, 465
Hsp92I GRCGYC 1 cut(s) 325
HspAI GCGC 1 cut(s) 325
KasI GGCGCC 1 cut(s) 324
Kzo9I GATC 2 cut(s) 336, 494
LmnI GCTCC 2 cut(s) 57, 245
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 2 cut(s) 160, 451
MaeI CTAG 2 cut(s) 185, 267
MaeIII GTNAC 1 cut(s) 107
MalI GATC 2 cut(s) 338, 496
MboI GATC 2 cut(s) 336, 494
MboII GAAGA 2 cut(s) 58, 426
MluCI AATT 3 cut(s) 97, 308, 411
Mly113I GGCGCC 1 cut(s) 325
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 7 cut(s) 55, 97, 152, 155, 217, 400, 436
MseI TTAA 4 cut(s) 72, 276, 357, 477
MspCI CTTAAG 1 cut(s) 476
MspR9I CCNGG 3 cut(s) 253, 329, 345
MvaI CCWGG 3 cut(s) 253, 329, 345
NarI GGCGCC 1 cut(s) 325
NdeII GATC 2 cut(s) 336, 494
NlaIV GGNNCC 2 cut(s) 326, 388
PfoI TCCNGGA 1 cut(s) 251
PkrI GCNGC 1 cut(s) 382
PleI GAGTC 1 cut(s) 370
PluTI GGCGCC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 370
Psp6I CCWGG 3 cut(s) 251, 327, 343
PspGI CCWGG 3 cut(s) 251, 327, 343
PspN4I GGNNCC 2 cut(s) 326, 388
PspPI GGNCC 3 cut(s) 93, 172, 386
PstI CTGCAG 1 cut(s) 385
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SaqAI TTAA 4 cut(s) 72, 276, 357, 477
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 2 cut(s) 336, 494
Sau96I GGNCC 3 cut(s) 93, 172, 386
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 253, 329, 345
SfaNI GCATC 2 cut(s) 160, 451
SfcI CTRYAG 1 cut(s) 381
SfoI GGCGCC 1 cut(s) 326
SinI GGWCC 1 cut(s) 172
SmlI CTYRAG 2 cut(s) 438, 476
SmoI CTYRAG 2 cut(s) 438, 476
Sse9I AATT 3 cut(s) 97, 308, 411
SspDI GGCGCC 1 cut(s) 324
SspMI CTAG 2 cut(s) 185, 267
StyD4I CCNGG 3 cut(s) 251, 327, 343
TaqI TCGA 1 cut(s) 154
TasI AATT 3 cut(s) 97, 308, 411
TatI WGTACW 1 cut(s) 80
Tru1I TTAA 4 cut(s) 72, 276, 357, 477
Tru9I TTAA 4 cut(s) 72, 276, 357, 477
TscAI CASTG 2 cut(s) 143, 211
TseI GCWGC 1 cut(s) 380
TspDTI ATGAA 3 cut(s) 255, 301, 321
TspRI CASTG 2 cut(s) 143, 211
Vha464I CTTAAG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 1 cut(s) 308
XbaI TCTAGA 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 447
XspI CTAG 2 cut(s) 185, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.