RLG00000001385

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000182
Physical Location & Seq
Forward (+)
14930862 .. 14937512
6651 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001385

Sequence Viewer

Length: 2064 bp
ATGCCACGCGCGCTACGCGCTCACCTCAATCCTAGAGCTCTGCTAGGGTTTCTTCGCTTCAAGTACATAGCCGCCGGCGACAACGGATGGTGGCCTCCCTGGCCTAACATTTACATCGCCATCGAGAAACAGCTCCTCGAGCACCTAATTCCAATTTTCCCTCTTCACAACGATTCTCATCATTACTCTTTCACTCTGCACAACATTCCTCATGATGAATCTATTTTCCCATTTTCTGATTTCGCCTCCACCGTAACGCCTCTTCGGGACTGGGTTCATGTCCTTCTAGCCCAACGACCGTCTGTTCAGTTCCCAATTTCTGATCTCGTCTCCACCGTTGTGCCGCTTCGAGCTGCTGAACAGGAGTGGGTACATGTCCTTCTTGCCCAACTGTCGTCTGCTCAGGTACGTTCCTCTCCTTCCCAATGCACCTTTTGTGCTTGGTTTTTACAAAAAACGGGGTTCTCCCGTCATTATGAACTAGGGATGCTACGAGTTCGCTTCGACTTCTGCGATTCATTAATTGGGTTTCGTTCCCGACCCCCAAGCTCAATATACTTTTCTAGGGTTTGGGGATCTCGGTTAAGGCCCCAAGGGTTGAACCTCTCAGACTCCCTTATTTATTTGATTCCATCACGACTCAACTGGTTCATCCATCTTCACCCCCAACTTTTCTTTCTCCAGTATCGTTACCTTCTCGCCATGGCTTTCAGCCCAAATGCTCGTGCCCAAGCTAGTCCTCCACGAAGGCCCCCTGTTTTTAATCCTCTCCCTCGACCAAACCCAAATGAACCTCCTTTTGTTACCAATATTGGTGGCAGCACAAGGGTGGTTGTCGAAAGTAACCAAACTCAGATCTTTGTCCCCAAACACGCCATTAATACCAAAGAACACCTCACTAACTACTACCTCCTTGCCAAGATTTTTGGCAAAAGAGTTTCCCCTAGGAAGATTGCTAGGAAGTGCAACCGAATGTGGGCTGGTCTTCAAGGAACAGTCAAGCTTATCCAGATGGCTAATGGATGGTTTTGCCTTGAATTCACTTATCAGCAGGACATCGATTTTGTCCTCGATAATAGGCCATGGTTTGTCAAGGGTAGGATCTTTCACATTAGATGTTGGTCCCCCTCCTTCAATCCTCGAACTGCGGATATCGAAACTCTCATCCTCTGGATTAGACTCCCCAATCTGCCTCTTCACTATTGGAGCAAACAAGCCATCCAACCAATTGTGCAAGTCATTGGTCGGTTTGTCAAGTTGGATGAGCGAACGGAGAATAGCGAAAACTATGTTTTTGCTAGAGTGTGTATGGAGATTGATTTACGCACTCCCCTGAAAAGTGTTTTGGTGATTCGTGAAGAAGAAGAGGGCGATCTGCCTTTTGATTTGGTTAGTAATCCTGCTAAAGTCTTTATCTCTTATGAAACCATTTTTGAAGTATGCTTTGAATGCGGGAGTTATAAGCATAAGATAAGGGACTGCACTTTTAAAAGAAGGGATAAGCATTTTGTGATGGTTGATAAGGAGGAGGGGGATGATGATGTTGTCCTTGCTGACATGGATGTGGATTCGGAGGCCAGGCAATTAGCAACAGCGAAGGTTATGCTCTTTTTCCCTCAACCTGCCAAGGAGGCGACTACTGAGGAGGTTGACCCTAATGATCCCACTGTCAATTCCCCATCACCTGAATGGAAGTTGGTCCGTGGCAGGAACCAGCATTACTCTTTAGCTAAGGGATCAGATGGTGCTAAGCTGCGCCAGAAAGGGAAGGCAGTAATGGAGTCGGGTAGTGCTGGGCAGAATACTCGCAAGGACGCTTTGGTTAAACCAGGCATTAGCTTTAAGGATGCAACCCAGGGACACGCTACTCTTATCATTGGTGACAAGGAGACCCACACTAGGCCCTATAACCCCCACAGGCTCTCATCCTCCAGTGAGGAGGAAGTGTTTGAGAATTTCAGTGATGCTAGAGCATTTGCTTTTGCTGGTGAGGATCAGACTATGAATGAGTATGCAGTTAGGATGATTAATGGGAGAAGGGCGCTGATTTGCAATATTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

688

Amino Acids

78.97

Weight (kDa)

9.0

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 301 - 380 1.8e-11 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1461
Acc36I ACCTGC 1 cut(s) 1630
AccII CGCG 3 cut(s) 9, 11, 18
AciI CCGC 4 cut(s) 72, 344, 1148, 1452
AclWI GGATC 5 cut(s) 583, 1109, 1655, 1744, 2001
AcsI RAATTY 2 cut(s) 1037, 1954
AfaI GTAC 3 cut(s) 65, 372, 408
AfiI CCNNNNNNNGG 2 cut(s) 976, 1899
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 7 cut(s) 61, 601, 989, 1037, 1135, 1436, 1448
AjnI CCWGG 4 cut(s) 98, 1577, 1828, 1854
AjuI GAANNNNNNNTTGG 4 cut(s) 660, 692, 1328, 1360
AleI CACNNNNGTG 2 cut(s) 338, 827
AluBI AGCT 9 cut(s) 38, 133, 353, 549, 734, 1003, 1730, 1753, 1839
AluI AGCT 9 cut(s) 38, 133, 353, 549, 734, 1003, 1730, 1753, 1839
Alw21I GWGCWC 2 cut(s) 40, 144
Alw26I GTCTC 2 cut(s) 334, 1883
AlwI GGATC 5 cut(s) 583, 1109, 1655, 1744, 2001
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 7 cut(s) 92, 101, 587, 749, 1079, 1575, 1901
ApeKI GCWGC 3 cut(s) 353, 819, 1753
ApoI RAATTY 2 cut(s) 1037, 1954
ArsI GACNNNNNNTTYG 2 cut(s) 1046, 1078
AseI ATTAAT 3 cut(s) 521, 879, 2028
AspA2I CCTAGG 1 cut(s) 944
AspLEI GCGC 5 cut(s) 11, 13, 20, 1758, 2044
AspS9I GGNCC 5 cut(s) 588, 750, 1122, 1699, 1902
AsuHPI GGTGA 6 cut(s) 14, 653, 1360, 1674, 1892, 2000
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 2 cut(s) 1122, 1699
AvrII CCTAGG 1 cut(s) 944
BaeGI GKGCMC 1 cut(s) 730
BanII GRGCYC 1 cut(s) 40
BarI GAAGNNNNNNTAC 4 cut(s) 246, 278, 363, 395
BauI CACGAG 1 cut(s) 723
BbsI GAAGAC 1 cut(s) 977
Bbv12I GWGCWC 2 cut(s) 40, 144
BbvI GCAGC 3 cut(s) 340, 831, 1740
BcgI CGANNNNNNTGC 4 cut(s) 1585, 1619, 1787, 1821
BciT130I CCWGG 4 cut(s) 100, 1579, 1830, 1856
BcoDI GTCTC 2 cut(s) 334, 1883
BfoI RGCGCY 1 cut(s) 2045
BfuAI ACCTGC 1 cut(s) 1630
BglI GCCNNNNNGGC 2 cut(s) 100, 1631
BglII AGATCT 1 cut(s) 855
BisI GCNGC 5 cut(s) 72, 344, 354, 820, 1754
BlnI CCTAGG 1 cut(s) 944
BlpI GCTNAGC 1 cut(s) 1749
BlsI GCNGC 5 cut(s) 73, 345, 355, 821, 1755
Bme1390I CCNGG 4 cut(s) 100, 1579, 1830, 1856
Bme18I GGWCC 2 cut(s) 1122, 1699
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 5 cut(s) 588, 750, 1122, 1699, 1902
BmiI GGNNCC 4 cut(s) 590, 752, 1124, 1712
BmrFI CCNGG 4 cut(s) 100, 1579, 1830, 1856
BmrI ACTGGG 1 cut(s) 280
BmsI GCATC 3 cut(s) 477, 1837, 1954
BmuI ACTGGG 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 977
BpmI CTGGAG 2 cut(s) 665, 1915
Bpu10I CCTNAGC 2 cut(s) 402, 1731
Bpu1102I GCTNAGC 1 cut(s) 1749
Bsa29I ATCGAT 1 cut(s) 1059
BsaBI GATNNNNATC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 1883
BsaJI CCNNGG 9 cut(s) 98, 592, 702, 944, 1082, 1626, 1702, 1854, 1855
BsaXI ACNNNNNCTCC 2 cut(s) 1931, 1961
Bsc4I CCNNNNNNNGG 2 cut(s) 976, 1899
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 4 cut(s) 275, 650, 682, 1932
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 4 cut(s) 100, 1579, 1830, 1856
BseCI ATCGAT 1 cut(s) 1059
BseDI CCNNGG 9 cut(s) 98, 592, 702, 944, 1082, 1626, 1702, 1854, 1855
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 2 cut(s) 976, 1899
BseMII CTCAG 4 cut(s) 416, 621, 866, 1632
BseNI ACTGG 4 cut(s) 275, 650, 682, 1932
BsePI GCGCGC 1 cut(s) 9
BseRI GAGGAG 4 cut(s) 125, 1541, 1658, 1952
BseSI GKGCMC 1 cut(s) 730
BseXI GCAGC 3 cut(s) 340, 831, 1740
BseYI CCCAGC 1 cut(s) 1793
BsgI GTGCAG 2 cut(s) 182, 1465
Bsh1236I CGCG 3 cut(s) 9, 11, 18
Bsh1285I CGRYCG 1 cut(s) 299
BshFI GGCC 7 cut(s) 94, 103, 589, 751, 1081, 1577, 1903
BshVI ATCGAT 1 cut(s) 1059
BsiEI CGRYCG 1 cut(s) 299
BsiHKAI GWGCWC 2 cut(s) 40, 144
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 5 cut(s) 281, 848, 1108, 1490, 1872
BslI CCNNNNNNNGG 2 cut(s) 976, 1899
BsmAI GTCTC 2 cut(s) 334, 1883
BsmBI CGTCTC 1 cut(s) 334
BsmFI GGGAC 5 cut(s) 281, 848, 1108, 1490, 1872
BsmI GAATGC 1 cut(s) 1454
BsnI GGCC 7 cut(s) 94, 103, 589, 751, 1081, 1577, 1903
Bso31I GGTCTC 1 cut(s) 1883
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 3 cut(s) 40, 144, 730
Bsp143I GATC 8 cut(s) 322, 575, 855, 1101, 1372, 1660, 1736, 1993
Bsp1720I GCTNAGC 1 cut(s) 1749
Bsp19I CCATGG 2 cut(s) 702, 1082
BspACI CCGC 4 cut(s) 72, 344, 1148, 1452
BspANI GGCC 7 cut(s) 94, 103, 589, 751, 1081, 1577, 1903
BspCNI CTCAG 4 cut(s) 415, 620, 865, 1633
BspDI ATCGAT 1 cut(s) 1059
BspFNI CGCG 3 cut(s) 9, 11, 18
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 4 cut(s) 590, 752, 1124, 1712
BspMI ACCTGC 1 cut(s) 1630
BspPI GGATC 5 cut(s) 583, 1109, 1655, 1744, 2001
BspTNI GGTCTC 1 cut(s) 1883
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 4 cut(s) 275, 650, 682, 1932
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 9 cut(s) 98, 592, 702, 944, 1082, 1626, 1702, 1854, 1855
BssHII GCGCGC 1 cut(s) 9
BssMI GATC 8 cut(s) 322, 575, 855, 1101, 1372, 1660, 1736, 1993
BssSI CACGAG 1 cut(s) 723
BssT1I CCWWGG 5 cut(s) 592, 702, 944, 1082, 1626
Bst2BI CACGAG 1 cut(s) 723
Bst2UI CCWGG 4 cut(s) 100, 1579, 1830, 1856
Bst4CI ACNGT 6 cut(s) 253, 300, 337, 393, 997, 1669
Bst6I CTCTTC 4 cut(s) 168, 267, 1200, 1359
BstC8I GCNNGC 2 cut(s) 11, 76
BstDEI CTNAG 6 cut(s) 402, 607, 852, 1641, 1731, 1749
BstDSI CCRYGG 3 cut(s) 702, 1082, 1702
BstFNI CGCG 3 cut(s) 9, 11, 18
BstH2I RGCGCY 1 cut(s) 2045
BstHHI GCGC 5 cut(s) 11, 13, 20, 1758, 2044
BstKTI GATC 8 cut(s) 325, 578, 858, 1104, 1375, 1663, 1739, 1996
BstMAI GTCTC 2 cut(s) 334, 1883
BstMBI GATC 8 cut(s) 322, 575, 855, 1101, 1372, 1660, 1736, 1993
BstMCI CGRYCG 1 cut(s) 299
BstMWI GCNNNNNNNGC 7 cut(s) 10, 15, 17, 100, 139, 1449, 1631
BstNI CCWGG 4 cut(s) 100, 1579, 1830, 1856
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 4 cut(s) 98, 1577, 1828, 1854
BstSLI GKGCMC 1 cut(s) 730
BstUI CGCG 3 cut(s) 9, 11, 18
BstV1I GCAGC 3 cut(s) 340, 831, 1740
BstV2I GAAGAC 1 cut(s) 977
BstX2I RGATCY 3 cut(s) 575, 855, 1101
BstYI RGATCY 3 cut(s) 575, 855, 1101
Bsu15I ATCGAT 1 cut(s) 1059
BsuRI GGCC 7 cut(s) 94, 103, 589, 751, 1081, 1577, 1903
BsuTUI ATCGAT 1 cut(s) 1059
BtgI CCRYGG 3 cut(s) 702, 1082, 1702
BtgZI GCGATG 1 cut(s) 100
BtsIMutI CAGTG 3 cut(s) 1665, 1939, 1966
BveI ACCTGC 1 cut(s) 1630
Cac8I GCNNGC 2 cut(s) 11, 76
CciI TCATGA 1 cut(s) 211
CfoI GCGC 5 cut(s) 11, 13, 20, 1758, 2044
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 5 cut(s) 588, 750, 1122, 1699, 1902
ClaI ATCGAT 1 cut(s) 1059
CseI GACGC 1 cut(s) 1823
Csp6I GTAC 3 cut(s) 64, 371, 407
CspCI CAANNNNNGTGG 2 cut(s) 796, 831
CviAII CATG 6 cut(s) 212, 278, 374, 703, 1083, 1558
CviQI GTAC 3 cut(s) 64, 371, 407
DdeI CTNAG 6 cut(s) 402, 607, 852, 1641, 1731, 1749
DpnI GATC 8 cut(s) 324, 577, 857, 1103, 1374, 1662, 1738, 1995
DpnII GATC 8 cut(s) 322, 575, 855, 1101, 1372, 1660, 1736, 1993
DraI TTTAAA 1 cut(s) 1489
Eam1104I CTCTTC 4 cut(s) 168, 267, 1200, 1359
EarI CTCTTC 4 cut(s) 168, 267, 1200, 1359
Ecl136II GAGCTC 1 cut(s) 38
Eco130I CCWWGG 5 cut(s) 592, 702, 944, 1082, 1626
Eco24I GRGCYC 1 cut(s) 40
Eco31I GGTCTC 1 cut(s) 1883
Eco32I GATATC 1 cut(s) 1153
Eco47I GGWCC 2 cut(s) 1122, 1699
Eco53kI GAGCTC 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 38
EcoO109I RGGNCCY 3 cut(s) 588, 750, 1902
EcoRI GAATTC 1 cut(s) 1037
EcoRII CCWGG 4 cut(s) 98, 1577, 1828, 1854
EcoRV GATATC 1 cut(s) 1153
EcoT14I CCWWGG 5 cut(s) 592, 702, 944, 1082, 1626
EcoT38I GRGCYC 1 cut(s) 40
ErhI CCWWGG 5 cut(s) 592, 702, 944, 1082, 1626
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 6 cut(s) 215, 281, 377, 706, 1086, 1561
FaqI GGGAC 5 cut(s) 281, 848, 1108, 1490, 1872
FatI CATG 6 cut(s) 211, 277, 373, 702, 1082, 1557
FauI CCCGC 1 cut(s) 1445
Fnu4HI GCNGC 5 cut(s) 72, 344, 354, 820, 1754
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 5 cut(s) 72, 344, 354, 820, 1754
GlaI GCGC 5 cut(s) 10, 12, 19, 1757, 2043
GluI GCNGC 5 cut(s) 72, 344, 354, 820, 1754
GsaI CCCAGC 1 cut(s) 1797
GsuI CTGGAG 2 cut(s) 665, 1915
HaeII RGCGCY 1 cut(s) 2045
HaeIII GGCC 7 cut(s) 94, 103, 589, 751, 1081, 1577, 1903
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 1823
HhaI GCGC 5 cut(s) 11, 13, 20, 1758, 2044
Hin1II CATG 6 cut(s) 215, 281, 377, 706, 1086, 1561
Hin6I GCGC 5 cut(s) 9, 11, 18, 1756, 2042
HinP1I GCGC 5 cut(s) 9, 11, 18, 1756, 2042
HincII GTYRAC 1 cut(s) 1651
HindII GTYRAC 1 cut(s) 1651
HindIII AAGCTT 1 cut(s) 1001
HpaII CCGG 1 cut(s) 75
HphI GGTGA 6 cut(s) 14, 653, 1360, 1674, 1892, 2000
Hpy166II GTNNAC 1 cut(s) 1651
Hpy188I TCNGA 7 cut(s) 238, 322, 610, 855, 1573, 1741, 1998
Hpy188III TCNNGA 8 cut(s) 124, 212, 266, 537, 636, 1009, 1171, 1355
Hpy8I GTNNAC 1 cut(s) 1651
HpyCH4III ACNGT 6 cut(s) 253, 300, 337, 393, 997, 1669
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 8 cut(s) 199, 429, 966, 1234, 1482, 1850, 2015, 2052
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 15, 17, 100, 139, 1449, 1631
HpyF3I CTNAG 6 cut(s) 402, 607, 852, 1641, 1731, 1749
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 6 cut(s) 215, 281, 377, 706, 1086, 1561
HspAI GCGC 5 cut(s) 9, 11, 18, 1756, 2042
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Kzo9I GATC 8 cut(s) 322, 575, 855, 1101, 1372, 1660, 1736, 1993
LmnI GCTCC 2 cut(s) 138, 1206
Lsp1109I GCAGC 3 cut(s) 340, 831, 1740
LweI GCATC 3 cut(s) 477, 1837, 1954
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 5 cut(s) 253, 689, 802, 842, 1880
MalI GATC 8 cut(s) 324, 577, 857, 1103, 1374, 1662, 1738, 1995
MboI GATC 8 cut(s) 322, 575, 855, 1101, 1372, 1660, 1736, 1993
MfeI CAATTG 1 cut(s) 1227
MflI RGATCY 3 cut(s) 575, 855, 1101
MhlI GDGCHC 3 cut(s) 40, 144, 730
MluCI AATT 9 cut(s) 147, 153, 315, 522, 1037, 1227, 1583, 1672, 1954
MlyI GAGTC 4 cut(s) 605, 633, 1173, 1790
MmeI TCCRAC 2 cut(s) 1239, 1246
MreI CGCCGGCG 1 cut(s) 74
MroNI GCCGGC 1 cut(s) 74
MseI TTAA 8 cut(s) 521, 584, 762, 879, 1488, 1824, 1842, 2028
MslI CAYNNNNRTG 4 cut(s) 338, 827, 1562, 1687
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 4 cut(s) 100, 1579, 1830, 1856
MunI CAATTG 1 cut(s) 1227
Mva1269I GAATGC 1 cut(s) 1454
MvaI CCWGG 4 cut(s) 100, 1579, 1830, 1856
MvnI CGCG 3 cut(s) 9, 11, 18
MwoI GCNNNNNNNGC 7 cut(s) 10, 15, 17, 100, 139, 1449, 1631
NaeI GCCGGC 1 cut(s) 76
NcoI CCATGG 2 cut(s) 702, 1082
NdeII GATC 8 cut(s) 322, 575, 855, 1101, 1372, 1660, 1736, 1993
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 6 cut(s) 215, 281, 377, 706, 1086, 1561
NlaIV GGNNCC 4 cut(s) 590, 752, 1124, 1712
NmuCI GTSAC 1 cut(s) 1880
NspI RCATGY 1 cut(s) 377
OliI CACNNNNGTG 2 cut(s) 338, 827
PaeR7I CTCGAG 1 cut(s) 137
PagI TCATGA 1 cut(s) 211
PasI CCCWGGG 1 cut(s) 1855
PauI GCGCGC 1 cut(s) 9
PciI ACATGT 1 cut(s) 373
PcsI WCGNNNNNNNCGW 3 cut(s) 249, 333, 510
PctI GAATGC 1 cut(s) 1454
PdiI GCCGGC 1 cut(s) 76
PfeI GAWTC 6 cut(s) 173, 218, 515, 628, 1351, 1568
PkrI GCNGC 5 cut(s) 73, 345, 355, 821, 1755
PleI GAGTC 4 cut(s) 605, 633, 1173, 1789
PpsI GAGTC 4 cut(s) 605, 633, 1173, 1789
PscI ACATGT 1 cut(s) 373
PshBI ATTAAT 3 cut(s) 521, 879, 2028
PsiI TTATAA 1 cut(s) 1461
Psp124BI GAGCTC 1 cut(s) 40
Psp6I CCWGG 4 cut(s) 98, 1577, 1828, 1854
PspFI CCCAGC 1 cut(s) 1793
PspGI CCWGG 4 cut(s) 98, 1577, 1828, 1854
PspN4I GGNNCC 4 cut(s) 590, 752, 1124, 1712
PspPI GGNCC 5 cut(s) 588, 750, 1122, 1699, 1902
PspXI VCTCGAGB 1 cut(s) 137
PsrI GAACNNNNNNTAC 2 cut(s) 1703, 1735
PsuI RGATCY 3 cut(s) 575, 855, 1101
PteI GCGCGC 1 cut(s) 9
RsaI GTAC 3 cut(s) 65, 372, 408
RsaNI GTAC 3 cut(s) 64, 371, 407
RseI CAYNNNNRTG 4 cut(s) 338, 827, 1562, 1687
SacI GAGCTC 1 cut(s) 40
SaqAI TTAA 8 cut(s) 521, 584, 762, 879, 1488, 1824, 1842, 2028
SatI GCNGC 5 cut(s) 72, 344, 354, 820, 1754
Sau3AI GATC 8 cut(s) 322, 575, 855, 1101, 1372, 1660, 1736, 1993
Sau96I GGNCC 5 cut(s) 588, 750, 1122, 1699, 1902
SchI GAGTC 4 cut(s) 605, 633, 1173, 1790
ScrFI CCNGG 4 cut(s) 100, 1579, 1830, 1856
SduI GDGCHC 3 cut(s) 40, 144, 730
SfaNI GCATC 3 cut(s) 477, 1837, 1954
SfiI GGCCNNNNNGGCC 1 cut(s) 100
Sfr274I CTCGAG 1 cut(s) 137
SgrAI CRCCGGYG 1 cut(s) 74
SinI GGWCC 2 cut(s) 1122, 1699
SlaI CTCGAG 1 cut(s) 137
SmiMI CAYNNNNRTG 4 cut(s) 338, 827, 1562, 1687
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 9 cut(s) 147, 153, 315, 522, 1037, 1227, 1583, 1672, 1954
SsiI CCGC 4 cut(s) 72, 344, 1148, 1452
SspI AATATT 2 cut(s) 811, 2056
SstI GAGCTC 1 cut(s) 40
StyD4I CCNGG 4 cut(s) 98, 1577, 1828, 1854
StyI CCWWGG 5 cut(s) 592, 702, 944, 1082, 1626
TaaI ACNGT 6 cut(s) 253, 300, 337, 393, 997, 1669
TaiI ACGT 1 cut(s) 412
TasI AATT 9 cut(s) 147, 153, 315, 522, 1037, 1227, 1583, 1672, 1954
TatI WGTACW 1 cut(s) 63
TauI GCSGC 2 cut(s) 74, 346
TfiI GAWTC 6 cut(s) 173, 218, 515, 628, 1351, 1568
Tru1I TTAA 8 cut(s) 521, 584, 762, 879, 1488, 1824, 1842, 2028
Tru9I TTAA 8 cut(s) 521, 584, 762, 879, 1488, 1824, 1842, 2028
TscAI CASTG 3 cut(s) 1672, 1939, 1966
TseFI GTSAC 1 cut(s) 1880
TseI GCWGC 3 cut(s) 353, 819, 1753
Tsp45I GTSAC 1 cut(s) 1880
TspDTI ATGAA 8 cut(s) 231, 266, 492, 507, 640, 804, 1437, 2018
TspGWI ACGGA 3 cut(s) 99, 1286, 1691
TspRI CASTG 3 cut(s) 1672, 1939, 1966
VpaK11BI GGWCC 2 cut(s) 1122, 1699
VspI ATTAAT 3 cut(s) 521, 879, 2028
XapI RAATTY 2 cut(s) 1037, 1954
XceI RCATGY 1 cut(s) 377
XcmI CCANNNNNNNNNTGG 2 cut(s) 1016, 1686
XhoI CTCGAG 1 cut(s) 137
XmaJI CCTAGG 1 cut(s) 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.