Rh2BG310200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
36289412 .. 36290056
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG310200.1

Sequence Viewer

Length: 381 bp
ATGGCGGCTGCTGCTACTACTATCATGGAATCAAATGAAGCTTACACTAAAAAAGGAGAAACTACTCCTGTCAGCAAGAAGGCTTTAGTCAAACTAGGAATCTCTTTCCAAGATGCTACTGCTGGTCAGGGTGCCAATGTTATTGGCAACCAACATGACAACCCTGAAAATAAATTTCACTATAGTGACTCCTCCAACGATGAAGATCGAGGTGGTGAGGTGATGATCAATGGCAAGAAAGTGATTTTGCTGGCTGAAAGTGACTCTGCAATGAGCTCTGGCTTGAAGAAAAGGACTAGGGATATGACCGAGGATTACATAATGGTTGAGGCACATGATGAGGAGGACACCGCCTCTTCCCCCAAAATGGCTAAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.58

Weight (kDa)

5.02

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AciI CCGC 2 cut(s) 5, 351
AcsI RAATTY 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 367
AgsI TTSAA 1 cut(s) 286
AleI CACNNNNGTG 1 cut(s) 183
AluBI AGCT 2 cut(s) 41, 276
AluI AGCT 2 cut(s) 41, 276
Alw21I GWGCWC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 8, 11
ApoI RAATTY 1 cut(s) 173
AsuHPI GGTGA 2 cut(s) 227, 232
BanI GGYRCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 278
BclI TGATCA 1 cut(s) 225
BfaI CTAG 2 cut(s) 95, 297
BfmI CTRYAG 1 cut(s) 181
BisI GCNGC 3 cut(s) 6, 9, 12
BlsI GCNGC 3 cut(s) 7, 10, 13
BmiI GGNNCC 1 cut(s) 133
BmsI GCATC 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 309
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse3DI GCAATG 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 309
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 276
BseRI GAGGAG 2 cut(s) 181, 356
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 278
Bsp143I GATC 2 cut(s) 205, 225
BspACI CCGC 2 cut(s) 5, 351
BspLI GGNNCC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 2 cut(s) 205, 225
Bst6I CTCTTC 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 252
BstKTI GATC 2 cut(s) 208, 228
BstMBI GATC 2 cut(s) 205, 225
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 252
CviAII CATG 3 cut(s) 25, 155, 335
CviJI RGCY 7 cut(s) 8, 41, 83, 254, 276, 282, 371
CviKI_1 RGCY 7 cut(s) 8, 41, 83, 254, 276, 282, 371
DpnI GATC 2 cut(s) 207, 227
DpnII GATC 2 cut(s) 205, 225
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
Ecl136II GAGCTC 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 278
Eco53kI GAGCTC 1 cut(s) 276
EcoICRI GAGCTC 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 278
FaeI CATG 3 cut(s) 28, 158, 338
FaiI YATR 6 cut(s) 26, 156, 183, 305, 320, 336
FatI CATG 3 cut(s) 24, 154, 334
FbaI TGATCA 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 6, 9, 12
FriOI GRGCYC 1 cut(s) 278
Fsp4HI GCNGC 3 cut(s) 6, 9, 12
FspBI CTAG 2 cut(s) 95, 297
GluI GCNGC 3 cut(s) 6, 9, 12
Hin1II CATG 3 cut(s) 28, 158, 338
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 4 cut(s) 29, 99, 188, 263
HphI GGTGA 2 cut(s) 227, 232
HpyAV CCTTC 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 3 cut(s) 28, 158, 338
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 2 cut(s) 205, 225
LpnPI CCDG 6 cut(s) 81, 108, 113, 177, 236, 264
LweI GCATC 1 cut(s) 103
MaeI CTAG 2 cut(s) 95, 297
MaeIII GTNAC 2 cut(s) 185, 260
MalI GATC 2 cut(s) 207, 227
MboI GATC 2 cut(s) 205, 225
MboII GAAGA 3 cut(s) 215, 298, 348
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 1 cut(s) 173
MlyI GAGTC 2 cut(s) 182, 257
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 8 cut(s) 202, 203, 211, 304, 322, 334, 337, 364
MslI CAYNNNNRTG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 205, 225
NlaIII CATG 3 cut(s) 28, 158, 338
NlaIV GGNNCC 1 cut(s) 133
NmuCI GTSAC 2 cut(s) 185, 260
OliI CACNNNNGTG 1 cut(s) 183
PfeI GAWTC 2 cut(s) 29, 99
PkrI GCNGC 3 cut(s) 7, 10, 13
PleI GAGTC 2 cut(s) 182, 257
PpsI GAGTC 2 cut(s) 182, 257
Psp124BI GAGCTC 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 183
SacI GAGCTC 1 cut(s) 278
SatI GCNGC 3 cut(s) 6, 9, 12
Sau3AI GATC 2 cut(s) 205, 225
SchI GAGTC 2 cut(s) 182, 257
SduI GDGCHC 1 cut(s) 278
SetI ASST 5 cut(s) 43, 214, 222, 278, 379
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 183
Sse9I AATT 1 cut(s) 173
SsiI CCGC 2 cut(s) 5, 351
SspMI CTAG 2 cut(s) 95, 297
SstI GAGCTC 1 cut(s) 278
TaqI TCGA 1 cut(s) 208
TaqII GACCGA 1 cut(s) 323
TasI AATT 1 cut(s) 173
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 29, 99
TseFI GTSAC 2 cut(s) 185, 260
TseI GCWGC 2 cut(s) 8, 11
Tsp45I GTSAC 2 cut(s) 185, 260
TspDTI ATGAA 2 cut(s) 51, 216
XapI RAATTY 1 cut(s) 173
XspI CTAG 2 cut(s) 95, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.