Rh6AG122800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000182
Physical Location & Seq
Reverse (-)
18306574 .. 18307261
688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG122800.1

Sequence Viewer

Length: 279 bp
ATGGCTTACAGCCCAAATGCTCGTGCTCAGACTAGCTCTTCACGTCCTCATAGCCCCATTGTCTTTAATTCTTACCCAAGACCTCGCCAAAACGAGCCACCTCTGGTCACCCATATTGGTGGTACCAAAATCATTGTTGATCAGAATGATACCACTGTGTTCGTACCTCAACATGCTCTCACCAGCAAGGAGCATTTGAACAACTATGTCTTGATTGCCAAGATCTTTGGTAAACGTGTCTCCCCGAGGAAGATTGTCAGGAAGTGTAATCAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.4

Weight (kDa)

10.5

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 122
AccB1I GGYRCC 1 cut(s) 122
AfaI GTAC 2 cut(s) 124, 165
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 1 cut(s) 199
AjiI CACGTC 1 cut(s) 44
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 244
Ama87I CYCGRG 1 cut(s) 244
Asp718I GGTACC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 100, 172
AvaI CYCGRG 1 cut(s) 244
BaeI ACNNNNGTAYC 2 cut(s) 141, 174
BanI GGYRCC 1 cut(s) 122
BauI CACGAG 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 28
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 2 cut(s) 33, 277
BglII AGATCT 1 cut(s) 222
BmeT110I CYCGRG 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 139, 222
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 124
BspQI GCTCTTC 1 cut(s) 43
BspT107I GGYRCC 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 2 cut(s) 139, 222
BssSI CACGAG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 43
BstDEI CTNAG 1 cut(s) 27
BstEII GGTNACC 1 cut(s) 106
BstKTI GATC 2 cut(s) 142, 225
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 139, 222
BstNSI RCATGY 1 cut(s) 176
BstPI GGTNACC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 222
BstXI CCANNNNNNTGG 1 cut(s) 119
BstYI RGATCY 1 cut(s) 222
BtrI CACGTC 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 153
Csp6I GTAC 2 cut(s) 123, 164
CviAII CATG 1 cut(s) 173
CviJI RGCY 5 cut(s) 5, 12, 36, 54, 97
CviKI_1 RGCY 5 cut(s) 5, 12, 36, 54, 97
CviQI GTAC 2 cut(s) 123, 164
DdeI CTNAG 1 cut(s) 27
DpnI GATC 2 cut(s) 141, 224
DpnII GATC 2 cut(s) 139, 222
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 244
Eco91I GGTNACC 1 cut(s) 106
EcoO65I GGTNACC 1 cut(s) 106
FaeI CATG 1 cut(s) 176
FaiI YATR 4 cut(s) 51, 114, 174, 207
FatI CATG 1 cut(s) 172
FbaI TGATCA 1 cut(s) 139
FspBI CTAG 2 cut(s) 33, 277
Hin1II CATG 1 cut(s) 176
HphI GGTGA 2 cut(s) 100, 172
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 30, 144
Hpy188III TCNNGA 2 cut(s) 211, 259
Hpy8I GTNNAC 1 cut(s) 233
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 2 cut(s) 43, 235
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 2 cut(s) 43, 235
Hsp92II CATG 1 cut(s) 176
KpnI GGTACC 1 cut(s) 126
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 2 cut(s) 139, 222
LguI GCTCTTC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 3 cut(s) 89, 196, 244
MaeI CTAG 2 cut(s) 33, 277
MaeII ACGT 2 cut(s) 43, 235
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 141, 224
MboI GATC 2 cut(s) 139, 222
MboII GAAGA 2 cut(s) 30, 262
MflI RGATCY 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 1 cut(s) 67
MnlI CCTC 5 cut(s) 57, 93, 111, 177, 240
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 117
NdeII GATC 2 cut(s) 139, 222
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 106
NspI RCATGY 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 43
PspEI GGTNACC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 124
PsuI RGATCY 1 cut(s) 222
RsaI GTAC 2 cut(s) 124, 165
RsaNI GTAC 2 cut(s) 123, 164
RseI CAYNNNNRTG 1 cut(s) 117
SapI GCTCTTC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 2 cut(s) 139, 222
SduI GDGCHC 1 cut(s) 28
SetI ASST 6 cut(s) 38, 46, 85, 103, 169, 238
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 1 cut(s) 67
SspMI CTAG 2 cut(s) 33, 277
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 2 cut(s) 46, 238
TasI AATT 1 cut(s) 67
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspRI CASTG 1 cut(s) 160
XceI RCATGY 1 cut(s) 176
XspI CTAG 2 cut(s) 33, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.