FvH4_3g04280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000182
Physical Location & Seq
Reverse (-)
2456669 .. 2457157
489 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04280.t1

Sequence Viewer

Length: 489 bp
ATGGAGATGTCAAGGCTCCTAAAAAGAAGAAAGCAACTACTGGTGCAACCGGCTATCTCCTTTAAGGATGTGGCTGCAAGCACAGGTGCTTTTATAGTAACAGATGAGGAAGTCAGGAAGAGCCTGCACTTGAACAATTCTAGAAGTCCCTCAAGCAATCAAGAGGAGCTGGTGAGCTATAGTCTAATATTTCCTCTTAACTCTTTCTCCAAATTCCCTGAAGTAGCCAGCCTTTACAACTATGATATCTATGATGCCTTTAATTGTTGGAATATCCCTGCTAGGCTAGACTCTGATAAGGAAGTGTCTTATTCACCTAATAAAGTAGTTAGATTTTTTCTATTTAATGGAGATATGACATCTATGCAGTTTGAGAATTTTGCAGCTACAAAGTCTCATGGAAATGAGGGGAAGGATATGGTTATGACTGATGTTGGTATCCAAAGCAGCAAAGGCAATAACCCTACTAGAGTGGGAGCTCTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.29

Weight (kDa)

7.83

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 212, 376
AcuI CTGAAG 1 cut(s) 240
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 4 cut(s) 169, 177, 386, 479
AluI AGCT 4 cut(s) 169, 177, 386, 479
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 1 cut(s) 399
ApeKI GCWGC 3 cut(s) 74, 383, 447
ApoI RAATTY 2 cut(s) 212, 376
AsuHPI GGTGA 2 cut(s) 184, 306
BanII GRGCYC 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 481
BbvI GCAGC 3 cut(s) 61, 395, 459
BciVI GTATCC 1 cut(s) 449
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 4 cut(s) 141, 282, 287, 468
BfmI CTRYAG 1 cut(s) 178
BfuI GTATCC 1 cut(s) 449
BisI GCNGC 3 cut(s) 75, 384, 448
BlsI GCNGC 3 cut(s) 76, 385, 449
BmiI GGNNCC 1 cut(s) 17
BmsI GCATC 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 136
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bse118I RCCGGY 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 3 cut(s) 61, 395, 459
BsgI GTGCAG 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 481
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 481
BspCNI CTCAG 1 cut(s) 474
BspLI GGNNCC 1 cut(s) 17
BspQI GCTCTTC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 49
BsrI ACTGG 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 113
BstC8I GCNNGC 3 cut(s) 79, 125, 229
BstDEI CTNAG 1 cut(s) 482
BstF5I GGATG 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 399
BstMWI GCNNNNNNNGC 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 178
BstV1I GCAGC 3 cut(s) 61, 395, 459
BsuI GTATCC 1 cut(s) 449
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 3 cut(s) 79, 125, 229
Cfr10I RCCGGY 1 cut(s) 49
CviAII CATG 1 cut(s) 398
DdeI CTNAG 1 cut(s) 482
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Ecl136II GAGCTC 1 cut(s) 479
Eco24I GRGCYC 1 cut(s) 481
Eco32I GATATC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 479
EcoRV GATATC 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 481
FaeI CATG 1 cut(s) 401
FaiI YATR 9 cut(s) 95, 180, 243, 252, 356, 365, 399, 419, 425
FaqI GGGAC 1 cut(s) 132
FatI CATG 1 cut(s) 397
Fnu4HI GCNGC 3 cut(s) 75, 384, 448
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 3 cut(s) 75, 384, 448
FspBI CTAG 4 cut(s) 141, 282, 287, 468
GluI GCNGC 3 cut(s) 75, 384, 448
HapII CCGG 1 cut(s) 50
Hin1II CATG 1 cut(s) 401
HinfI GANTC 1 cut(s) 290
HpaII CCGG 1 cut(s) 50
HphI GGTGA 2 cut(s) 184, 306
Hpy188I TCNGA 2 cut(s) 295, 483
Hpy188III TCNNGA 3 cut(s) 115, 141, 161
HpyAV CCTTC 1 cut(s) 406
HpyCH4V TGCA 5 cut(s) 46, 77, 127, 367, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 453
HpyF3I CTNAG 1 cut(s) 482
Hsp92II CATG 1 cut(s) 401
LguI GCTCTTC 1 cut(s) 113
LmnI GCTCC 3 cut(s) 21, 166, 476
LpnPI CCDG 9 cut(s) 26, 63, 69, 100, 137, 155, 231, 241, 291
Lsp1109I GCAGC 3 cut(s) 61, 395, 459
LweI GCATC 1 cut(s) 244
MaeI CTAG 4 cut(s) 141, 282, 287, 468
MaeIII GTNAC 1 cut(s) 97
MboII GAAGA 2 cut(s) 39, 130
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 4 cut(s) 136, 212, 262, 376
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 5 cut(s) 100, 157, 160, 204, 400
MseI TTAA 4 cut(s) 63, 198, 261, 345
MslI CAYNNNNRTG 1 cut(s) 402
MspI CCGG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 453
NlaIII CATG 1 cut(s) 401
NlaIV GGNNCC 1 cut(s) 17
PciSI GCTCTTC 1 cut(s) 113
PkrI GCNGC 3 cut(s) 76, 385, 449
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 402
SacI GAGCTC 1 cut(s) 481
SapI GCTCTTC 1 cut(s) 113
SaqAI TTAA 4 cut(s) 63, 198, 261, 345
SatI GCNGC 3 cut(s) 75, 384, 448
SchI GAGTC 1 cut(s) 284
SduI GDGCHC 1 cut(s) 481
SetI ASST 6 cut(s) 88, 171, 179, 319, 388, 481
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 4 cut(s) 136, 212, 262, 376
SspI AATATT 1 cut(s) 189
SspMI CTAG 4 cut(s) 141, 282, 287, 468
SstI GAGCTC 1 cut(s) 481
TasI AATT 4 cut(s) 136, 212, 262, 376
Tru1I TTAA 4 cut(s) 63, 198, 261, 345
Tru9I TTAA 4 cut(s) 63, 198, 261, 345
TseI GCWGC 3 cut(s) 74, 383, 447
XapI RAATTY 2 cut(s) 212, 376
XbaI TCTAGA 1 cut(s) 140
XspI CTAG 4 cut(s) 141, 282, 287, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.