Rroxscaffold_7G00209080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000182
Physical Location & Seq
Forward (+)
59354355 .. 59356017
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00209080.1

Sequence Viewer

Length: 702 bp
ATGCTTCAGTTCCCGGCTTTTGGAGCTTCTAATGTTATCTTGGAGCGGCGCGTGGCGACGCGTCGGCTTGATCTAGGGGCAAGCCGAGGCTCGGGCGGTAGCTCGCTTGGCCGTGTTCCCGTAGGTCACTTCTTTGGCGGGAGTTGGTACCGGCGGCTGCGAACCTCTTCTTTGCCTTCCATCCCAAGATTTCTACCTTCGCCTCTGCAATCTCGATTAACCCAGGGAGTAAATCTTATCCTATTTTTAGCTTCTGCTTTTTTTCCTTGTGATGTTATTGAGTGGCATGCTTGTGTTTTAATTGGTCTTGGTGTTTGCCCCGAGTTGCTTAGACGATTGATCTTCTTTGTGTTTCTTGATTATCTAAGTATAGATTTTTTGCTTCTTGTTTGTGCTTCCTTTTCTAGTTTCCTAGGAGATTTTTTAGATTCTCATTCTCGGAATACCAATATCCGAACCGTGGGGGAAAGCGACTTTATGTGGCCTCCAAGGTCCCTTCACGATAAAAATTACCTGGCTTTTATCCCGATTAATCACACTACCCTCTATCTCCTTAGCATCCTATTATCTACCCACATAATGACTTTCAACCTCGCTTCTCAAGCACGGCTAGCTGCTGGCCTTAGAAGACCTAATCCACTCACCAATATTTCCCATTTCCTAGAAACCAAATTGGGTCCGAGTCCATCCCGGTTGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.04

Weight (kDa)

10.26

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 147
AccBSI CCGCTC 1 cut(s) 46
AccII CGCG 2 cut(s) 51, 61
AciI CCGC 4 cut(s) 46, 96, 138, 154
AcoI YGGCCR 1 cut(s) 109
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 3 cut(s) 20, 91, 460
AflIII ACRYGT 1 cut(s) 59
AgsI TTSAA 1 cut(s) 589
AjnI CCWGG 2 cut(s) 222, 513
AluBI AGCT 4 cut(s) 26, 102, 251, 614
AluI AGCT 4 cut(s) 26, 102, 251, 614
Ama87I CYCGRG 2 cut(s) 91, 320
AoxI GGCC 3 cut(s) 109, 482, 619
ApeKI GCWGC 2 cut(s) 157, 614
AseI ATTAAT 1 cut(s) 531
Asp700I GAANNNNTTC 1 cut(s) 166
Asp718I GGTACC 1 cut(s) 147
AspA2I CCTAGG 1 cut(s) 412
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 2 cut(s) 492, 677
AsuC2I CCSGG 2 cut(s) 14, 691
AsuHPI GGTGA 1 cut(s) 634
AsuNHI GCTAGC 1 cut(s) 610
AvaI CYCGRG 2 cut(s) 91, 320
AvaII GGWCC 2 cut(s) 492, 677
AvrII CCTAGG 1 cut(s) 412
BanI GGYRCC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 634
BbvI GCAGC 2 cut(s) 144, 601
BccI CCATC 2 cut(s) 188, 694
BceAI ACGGC 2 cut(s) 96, 623
BciT130I CCWGG 2 cut(s) 224, 515
BcnI CCSGG 2 cut(s) 14, 691
BfaI CTAG 5 cut(s) 74, 405, 413, 611, 662
BisI GCNGC 4 cut(s) 47, 155, 158, 615
BlnI CCTAGG 1 cut(s) 412
BlsI GCNGC 4 cut(s) 48, 156, 159, 616
Bme1390I CCNGG 4 cut(s) 14, 224, 515, 691
Bme18I GGWCC 2 cut(s) 492, 677
BmeT110I CYCGRG 2 cut(s) 91, 320
BmgT120I GGNCC 2 cut(s) 492, 677
BmiI GGNNCC 3 cut(s) 149, 494, 678
BmrFI CCNGG 4 cut(s) 14, 224, 515, 691
BmsI GCATC 1 cut(s) 567
BmtI GCTAGC 1 cut(s) 614
BpiI GAAGAC 1 cut(s) 634
Bpu10I CCTNAGC 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 585
BpuMI CCSGG 2 cut(s) 14, 691
BsaJI CCNNGG 6 cut(s) 85, 222, 223, 412, 459, 488
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 91, 460
Bse118I RCCGGY 1 cut(s) 150
BseBI CCWGG 2 cut(s) 224, 515
BseDI CCNNGG 6 cut(s) 85, 222, 223, 412, 459, 488
BseGI GGATG 3 cut(s) 180, 558, 686
BseLI CCNNNNNNNGG 3 cut(s) 20, 91, 460
BseXI GCAGC 2 cut(s) 144, 601
Bsh1236I CGCG 2 cut(s) 51, 61
BshFI GGCC 3 cut(s) 111, 484, 621
BshNI GGYRCC 1 cut(s) 147
BsiHKCI CYCGRG 2 cut(s) 91, 320
BsiSI CCGG 3 cut(s) 14, 151, 691
BslFI GGGAC 1 cut(s) 478
BslI CCNNNNNNNGG 3 cut(s) 20, 91, 460
BsmFI GGGAC 1 cut(s) 478
BsnI GGCC 3 cut(s) 111, 484, 621
BsoBI CYCGRG 2 cut(s) 91, 320
Bsp143I GATC 2 cut(s) 70, 339
BspACI CCGC 4 cut(s) 46, 96, 138, 154
BspANI GGCC 3 cut(s) 111, 484, 621
BspFNI CGCG 2 cut(s) 51, 61
BspLI GGNNCC 3 cut(s) 149, 494, 678
BspOI GCTAGC 1 cut(s) 614
BspT107I GGYRCC 1 cut(s) 147
BsrBI CCGCTC 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 6 cut(s) 85, 222, 223, 412, 459, 488
BssMI GATC 2 cut(s) 70, 339
BssT1I CCWWGG 2 cut(s) 412, 488
Bst2UI CCWGG 2 cut(s) 224, 515
Bst4CI ACNGT 1 cut(s) 460
Bst6I CTCTTC 1 cut(s) 172
BstC8I GCNNGC 5 cut(s) 82, 104, 288, 612, 619
BstDEI CTNAG 4 cut(s) 329, 365, 554, 623
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 3 cut(s) 180, 558, 686
BstFNI CGCG 2 cut(s) 51, 61
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 2 cut(s) 73, 342
BstMBI GATC 2 cut(s) 70, 339
BstMWI GCNNNNNNNGC 4 cut(s) 23, 108, 602, 611
BstNI CCWGG 2 cut(s) 224, 515
BstNSI RCATGY 1 cut(s) 290
BstSCI CCNGG 4 cut(s) 12, 222, 513, 689
BstUI CGCG 2 cut(s) 51, 61
BstV1I GCAGC 2 cut(s) 144, 601
BstV2I GAAGAC 1 cut(s) 634
BsuRI GGCC 3 cut(s) 111, 484, 621
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 3 cut(s) 180, 558, 686
Cac8I GCNNGC 5 cut(s) 82, 104, 288, 612, 619
CfoI GCGC 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 492, 677
CseI GACGC 2 cut(s) 50, 67
Csp6I GTAC 1 cut(s) 148
CviAII CATG 1 cut(s) 287
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 4 cut(s) 329, 365, 554, 623
DpnI GATC 2 cut(s) 72, 341
DpnII GATC 2 cut(s) 70, 339
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 412, 488
Eco47I GGWCC 2 cut(s) 492, 677
Eco88I CYCGRG 2 cut(s) 91, 320
EcoO109I RGGNCCY 1 cut(s) 492
EcoRII CCWGG 2 cut(s) 222, 513
EcoT14I CCWWGG 2 cut(s) 412, 488
ErhI CCWWGG 2 cut(s) 412, 488
FaeI CATG 1 cut(s) 290
FaiI YATR 5 cut(s) 288, 371, 479, 578, 700
FaqI GGGAC 1 cut(s) 478
FatI CATG 1 cut(s) 286
FauI CCCGC 1 cut(s) 131
Fnu4HI GCNGC 4 cut(s) 47, 155, 158, 615
FokI GGATG 3 cut(s) 167, 545, 673
Fsp4HI GCNGC 4 cut(s) 47, 155, 158, 615
FspBI CTAG 5 cut(s) 74, 405, 413, 611, 662
GlaI GCGC 1 cut(s) 50
GluI GCNGC 4 cut(s) 47, 155, 158, 615
HaeIII GGCC 3 cut(s) 111, 484, 621
HapII CCGG 3 cut(s) 14, 151, 691
HgaI GACGC 2 cut(s) 50, 67
HhaI GCGC 1 cut(s) 51
Hin1II CATG 1 cut(s) 290
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HinfI GANTC 2 cut(s) 428, 682
HpaII CCGG 3 cut(s) 14, 151, 691
HphI GGTGA 1 cut(s) 634
Hpy188I TCNGA 3 cut(s) 441, 455, 681
Hpy188III TCNNGA 4 cut(s) 213, 356, 500, 526
Hpy99I CGWCG 2 cut(s) 61, 66
HpyAV CCTTC 3 cut(s) 186, 207, 506
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 108, 602, 611
HpyF3I CTNAG 4 cut(s) 329, 365, 554, 623
Hsp92II CATG 1 cut(s) 290
HspAI GCGC 1 cut(s) 49
KpnI GGTACC 1 cut(s) 151
Kzo9I GATC 2 cut(s) 70, 339
LmnI GCTCC 2 cut(s) 23, 43
LpnPI CCDG 7 cut(s) 27, 164, 209, 236, 500, 527, 603
Lsp1109I GCAGC 2 cut(s) 144, 601
LweI GCATC 1 cut(s) 567
MaeI CTAG 5 cut(s) 74, 405, 413, 611, 662
MaeIII GTNAC 1 cut(s) 125
MalI GATC 2 cut(s) 72, 341
MbiI CCGCTC 1 cut(s) 46
MboI GATC 2 cut(s) 70, 339
MboII GAAGA 3 cut(s) 159, 334, 639
MluCI AATT 3 cut(s) 300, 508, 671
MluI ACGCGT 1 cut(s) 59
MlyI GAGTC 1 cut(s) 691
MnlI CCTC 6 cut(s) 80, 175, 213, 495, 554, 602
MroXI GAANNNNTTC 1 cut(s) 166
MseI TTAA 3 cut(s) 218, 299, 531
MslI CAYNNNNRTG 1 cut(s) 291
MspI CCGG 3 cut(s) 14, 151, 691
MspR9I CCNGG 4 cut(s) 14, 224, 515, 691
MvaI CCWGG 2 cut(s) 224, 515
MvnI CGCG 2 cut(s) 51, 61
MwoI GCNNNNNNNGC 4 cut(s) 23, 108, 602, 611
NciI CCSGG 2 cut(s) 14, 691
NdeII GATC 2 cut(s) 70, 339
NheI GCTAGC 1 cut(s) 610
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 3 cut(s) 149, 494, 678
NmeAIII GCCGAG 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 125
NspI RCATGY 1 cut(s) 290
PaeI GCATGC 1 cut(s) 290
PasI CCCWGGG 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 428
PkrI GCNGC 4 cut(s) 48, 156, 159, 616
PleI GAGTC 1 cut(s) 690
PpsI GAGTC 1 cut(s) 690
PpuMI RGGWCCY 1 cut(s) 492
PshBI ATTAAT 1 cut(s) 531
Psp5II RGGWCCY 1 cut(s) 492
Psp6I CCWGG 2 cut(s) 222, 513
PspGI CCWGG 2 cut(s) 222, 513
PspN4I GGNNCC 3 cut(s) 149, 494, 678
PspPI GGNCC 2 cut(s) 492, 677
PspPPI RGGWCCY 1 cut(s) 492
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 3 cut(s) 218, 299, 531
SatI GCNGC 4 cut(s) 47, 155, 158, 615
Sau3AI GATC 2 cut(s) 70, 339
Sau96I GGNCC 2 cut(s) 492, 677
SchI GAGTC 1 cut(s) 691
ScrFI CCNGG 4 cut(s) 14, 224, 515, 691
SfaNI GCATC 1 cut(s) 567
SinI GGWCC 2 cut(s) 492, 677
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 600
SmoI CTYRAG 1 cut(s) 600
SphI GCATGC 1 cut(s) 290
Sse9I AATT 3 cut(s) 300, 508, 671
SsiI CCGC 4 cut(s) 46, 96, 138, 154
SspI AATATT 1 cut(s) 649
SspMI CTAG 5 cut(s) 74, 405, 413, 611, 662
StyD4I CCNGG 4 cut(s) 12, 222, 513, 689
StyI CCWWGG 2 cut(s) 412, 488
TaaI ACNGT 1 cut(s) 460
TaqI TCGA 1 cut(s) 214
TasI AATT 3 cut(s) 300, 508, 671
TauI GCSGC 2 cut(s) 49, 157
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 3 cut(s) 218, 299, 531
Tru9I TTAA 3 cut(s) 218, 299, 531
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 2 cut(s) 157, 614
Tsp45I GTSAC 1 cut(s) 125
VpaK11BI GGWCC 2 cut(s) 492, 677
VspI ATTAAT 1 cut(s) 531
XceI RCATGY 1 cut(s) 290
XmaJI CCTAGG 1 cut(s) 412
XmnI GAANNNNTTC 1 cut(s) 166
XspI CTAG 5 cut(s) 74, 405, 413, 611, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.