Rmu_sc0002833.1_g000037

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002833.1
OG0000182
Physical Location & Seq
Reverse (-)
163569 .. 168588
5020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002833.1_g000037.1.cds

Sequence Viewer

Length: 1116 bp
atgaatgatgtccatttagaaaataaccctgcagaagaacaaaatccacctcagcctaggagatcccaaagagagagaagaccagtatatggggaagatagtgattttctagtgtacctgcaagaaaccgatattctaagtgaagataatgatccttcaagcttcaagcaagctgttgagagccatgaaaaggctttctgctctagttctgctgctattcattcttgtttccagttgctcaagatgtctaaccttggtcaagttgtttctgcagggatccagagcgtcattgaaccagattcaaagccgtcggggagatcggatggtggtcgccatggccaggcttctgcaccaccaattgatttcgaacagaatctaacaacgggtcggtggcagcacataatcatttctactcggaacttgaagaaatcagccgtaatgaccagccctaatgcacgagcacaaatcagcccccctaaaagaacaccagtgatgttcaatcctttacccagaccaaaccgaaatgagcgaccttttgttaccaacattggtggtactagggtggtagtggaaaatagccaaacccaagtttatgtccccaaacactccataaccaataaggagcacctcaacaattactgcctcttagcaaaagtcttcgacaagaaggtctctcctagaaaaatagctaggaaatgcaacagaatgtgcactaatcttcaaggcacagtcaaactaatccaaatggcaaatggctggttctcgctggattttgcttacctgcaggacgttgattttgtcctggaaaataggccttggtttgtcaagggccgaatcttccatatccggaaatggtcctcatctttgaacccgagggaggatagtattgagaccctggtgctttgggttcgacttcccaaccttcctctgcattactggagcaaggaagccatcataccaatagttcatgtaattggtcgttttattaggcttgatgaacgtactgagaatagtaagaattatgtctttgcaagggtctgcacggaaatagacatgaggactcctctgaaaagggttctggttatacgggaggaagaggagggagacctaccgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

371

Amino Acids

42.51

Weight (kDa)

9.16

Isoelectric Point (pI)

58.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 668
Acc36I ACCTGC 2 cut(s) 126, 789
AccB7I CCANNNNNTGG 1 cut(s) 89
AccIII TCCGGA 1 cut(s) 846
AclWI GGATC 4 cut(s) 57, 146, 271, 284
AcoI YGGCCR 1 cut(s) 337
AfaI GTAC 3 cut(s) 116, 556, 1003
AfiI CCNNNNNNNGG 4 cut(s) 89, 190, 340, 877
AgsI TTSAA 8 cut(s) 159, 166, 293, 303, 424, 499, 722, 868
AjnI CCWGG 3 cut(s) 339, 801, 894
AluBI AGCT 3 cut(s) 162, 173, 689
AluI AGCT 3 cut(s) 162, 173, 689
Alw21I GWGCWC 3 cut(s) 463, 627, 713
Alw26I GTCTC 3 cut(s) 676, 884, 1098
Alw44I GTGCAC 1 cut(s) 709
AlwI GGATC 4 cut(s) 57, 146, 271, 284
Ama87I CYCGRG 1 cut(s) 871
Aor13HI TCCGGA 1 cut(s) 846
AoxI GGCC 3 cut(s) 337, 812, 829
ApaLI GTGCAC 1 cut(s) 709
ApeKI GCWGC 2 cut(s) 212, 394
ArsI GACNNNNNNTTYG 2 cut(s) 779, 811
AspA2I CCTAGG 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 829, 855
AsuII TTCGAA 1 cut(s) 366
AvaI CYCGRG 1 cut(s) 871
AvaII GGWCC 1 cut(s) 855
AvrII CCTAGG 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 713
BaeI ACNNNNGTAYC 2 cut(s) 546, 579
BalI TGGCCA 1 cut(s) 339
BamHI GGATCC 1 cut(s) 276
BarI GAAGNNNNNNTAC 2 cut(s) 939, 971
BauI CACGAG 1 cut(s) 456
BbsI GAAGAC 2 cut(s) 85, 649
Bbv12I GWGCWC 3 cut(s) 463, 627, 713
BbvCI CCTCAGC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 199, 406
BccI CCATC 2 cut(s) 317, 959
BceAI ACGGC 2 cut(s) 292, 419
BciT130I CCWGG 3 cut(s) 341, 803, 896
BcoDI GTCTC 3 cut(s) 676, 884, 1098
BfaI CTAG 6 cut(s) 57, 110, 204, 558, 678, 690
BfmI CTRYAG 3 cut(s) 30, 270, 782
BfuAI ACCTGC 2 cut(s) 126, 789
BisI GCNGC 2 cut(s) 213, 395
BlnI CCTAGG 1 cut(s) 56
BlsI GCNGC 2 cut(s) 214, 396
Bme1390I CCNGG 3 cut(s) 341, 803, 896
Bme18I GGWCC 1 cut(s) 855
BmeT110I CYCGRG 1 cut(s) 871
BmgT120I GGNCC 2 cut(s) 829, 855
BmiI GGNNCC 1 cut(s) 278
BmrFI CCNGG 3 cut(s) 341, 803, 896
BpiI GAAGAC 2 cut(s) 85, 649
BplI GAGNNNNNCTC 2 cut(s) 1048, 1080
BpmI CTGGAG 1 cut(s) 958
Bpu10I CCTNAGC 1 cut(s) 51
Bpu14I TTCGAA 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 150
BsaI GGTCTC 3 cut(s) 676, 884, 1098
BsaJI CCNNGG 6 cut(s) 56, 253, 334, 815, 872, 894
BsaWI WCCGGW 1 cut(s) 846
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 190, 340, 877
Bse1I ACTGG 4 cut(s) 83, 232, 488, 941
Bse8I GATNNNNATC 1 cut(s) 150
BseAI TCCGGA 1 cut(s) 846
BseBI CCWGG 3 cut(s) 341, 803, 896
BseDI CCNNGG 6 cut(s) 56, 253, 334, 815, 872, 894
BseGI GGATG 1 cut(s) 328
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 4 cut(s) 89, 190, 340, 877
BseMII CTCAG 2 cut(s) 65, 996
BseNI ACTGG 4 cut(s) 83, 232, 488, 941
BseRI GAGGAG 2 cut(s) 1053, 1112
BseSI GKGCMC 1 cut(s) 713
BseXI GCAGC 2 cut(s) 199, 406
BsgI GTGCAG 2 cut(s) 333, 1024
BshFI GGCC 3 cut(s) 339, 814, 831
BsiHKAI GWGCWC 3 cut(s) 463, 627, 713
BsiHKCI CYCGRG 1 cut(s) 871
BsiSI CCGG 1 cut(s) 847
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 4 cut(s) 89, 190, 340, 877
BsmAI GTCTC 3 cut(s) 676, 884, 1098
BsmFI GGGAC 1 cut(s) 581
BsnI GGCC 3 cut(s) 339, 814, 831
Bso31I GGTCTC 3 cut(s) 676, 884, 1098
BsoBI CYCGRG 1 cut(s) 871
Bsp119I TTCGAA 1 cut(s) 366
Bsp1286I GDGCHC 3 cut(s) 463, 627, 713
Bsp13I TCCGGA 1 cut(s) 846
Bsp143I GATC 4 cut(s) 62, 151, 276, 317
Bsp19I CCATGG 1 cut(s) 334
BspANI GGCC 3 cut(s) 339, 814, 831
BspCNI CTCAG 2 cut(s) 64, 997
BspEI TCCGGA 1 cut(s) 846
BspLI GGNNCC 1 cut(s) 278
BspMAI CTGCAG 3 cut(s) 34, 274, 786
BspMI ACCTGC 2 cut(s) 126, 789
BspPI GGATC 4 cut(s) 57, 146, 271, 284
BspT104I TTCGAA 1 cut(s) 366
BspTNI GGTCTC 3 cut(s) 676, 884, 1098
BsrI ACTGG 4 cut(s) 83, 232, 488, 941
BssECI CCNNGG 6 cut(s) 56, 253, 334, 815, 872, 894
BssMI GATC 4 cut(s) 62, 151, 276, 317
BssSI CACGAG 1 cut(s) 456
BssT1I CCWWGG 4 cut(s) 56, 253, 334, 815
Bst2BI CACGAG 1 cut(s) 456
Bst2UI CCWGG 3 cut(s) 341, 803, 896
Bst4CI ACNGT 2 cut(s) 730, 1113
Bst6I CTCTTC 1 cut(s) 1089
BstBI TTCGAA 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 4 cut(s) 51, 137, 646, 1005
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 4 cut(s) 65, 154, 279, 320
BstMAI GTCTC 3 cut(s) 676, 884, 1098
BstMBI GATC 4 cut(s) 62, 151, 276, 317
BstNI CCWGG 3 cut(s) 341, 803, 896
BstSCI CCNGG 3 cut(s) 339, 801, 894
BstSFI CTRYAG 3 cut(s) 30, 270, 782
BstSLI GKGCMC 1 cut(s) 713
BstV1I GCAGC 2 cut(s) 199, 406
BstV2I GAAGAC 2 cut(s) 85, 649
BstX2I RGATCY 2 cut(s) 62, 276
BstYI RGATCY 2 cut(s) 62, 276
BsuRI GGCC 3 cut(s) 339, 814, 831
BtgI CCRYGG 1 cut(s) 334
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 495
BveI ACCTGC 2 cut(s) 126, 789
Cac8I GCNNGC 1 cut(s) 171
Cfr13I GGNCC 2 cut(s) 829, 855
CseI GACGC 1 cut(s) 274
Csp6I GTAC 3 cut(s) 115, 555, 1002
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 4 cut(s) 185, 335, 968, 1054
CviQI GTAC 3 cut(s) 115, 555, 1002
DdeI CTNAG 4 cut(s) 51, 137, 646, 1005
DpnI GATC 4 cut(s) 64, 153, 278, 319
DpnII GATC 4 cut(s) 62, 151, 276, 317
DrdI GACNNNNNNGTC 1 cut(s) 668
DseDI GACNNNNNNGTC 1 cut(s) 668
EaeI YGGCCR 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 1089
EarI CTCTTC 1 cut(s) 1089
Eco130I CCWWGG 4 cut(s) 56, 253, 334, 815
Eco147I AGGCCT 1 cut(s) 814
Eco31I GGTCTC 3 cut(s) 676, 884, 1098
Eco47I GGWCC 1 cut(s) 855
Eco88I CYCGRG 1 cut(s) 871
EcoRII CCWGG 3 cut(s) 339, 801, 894
EcoT14I CCWWGG 4 cut(s) 56, 253, 334, 815
ErhI CCWWGG 4 cut(s) 56, 253, 334, 815
FaeI CATG 4 cut(s) 188, 338, 971, 1057
FaqI GGGAC 1 cut(s) 581
FatI CATG 4 cut(s) 184, 334, 967, 1053
Fnu4HI GCNGC 2 cut(s) 213, 395
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 213, 395
FspBI CTAG 6 cut(s) 57, 110, 204, 558, 678, 690
GluI GCNGC 2 cut(s) 213, 395
GsuI CTGGAG 1 cut(s) 958
HaeIII GGCC 3 cut(s) 339, 814, 831
HapII CCGG 1 cut(s) 847
HgaI GACGC 1 cut(s) 274
Hin1II CATG 4 cut(s) 188, 338, 971, 1057
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 4 cut(s) 299, 373, 834, 1060
HpaII CCGG 1 cut(s) 847
Hpy166II GTNNAC 2 cut(s) 115, 711
Hpy188I TCNGA 3 cut(s) 322, 417, 1068
Hpy188III TCNNGA 3 cut(s) 241, 280, 847
Hpy8I GTNNAC 2 cut(s) 115, 711
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 3 cut(s) 165, 661, 932
HpyCH4III ACNGT 2 cut(s) 730, 1113
HpyCH4IV ACGT 2 cut(s) 789, 1000
HpyF3I CTNAG 4 cut(s) 51, 137, 646, 1005
HpySE526I ACGT 2 cut(s) 789, 1000
Hsp92II CATG 4 cut(s) 188, 338, 971, 1057
Kpn2I TCCGGA 1 cut(s) 846
Kzo9I GATC 4 cut(s) 62, 151, 276, 317
LmnI GCTCC 2 cut(s) 622, 939
Lsp1109I GCAGC 2 cut(s) 199, 406
MaeI CTAG 6 cut(s) 57, 110, 204, 558, 678, 690
MaeII ACGT 2 cut(s) 789, 1000
MaeIII GTNAC 1 cut(s) 538
MalI GATC 4 cut(s) 64, 153, 278, 319
MboI GATC 4 cut(s) 62, 151, 276, 317
MboII GAAGA 9 cut(s) 47, 90, 107, 155, 436, 649, 710, 829, 1106
MfeI CAATTG 1 cut(s) 357
MflI RGATCY 2 cut(s) 62, 276
MhlI GDGCHC 3 cut(s) 463, 627, 713
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 4 cut(s) 357, 634, 972, 1018
MluNI TGGCCA 1 cut(s) 339
MlyI GAGTC 1 cut(s) 1054
Mox20I TGGCCA 1 cut(s) 339
MroI TCCGGA 1 cut(s) 846
MscI TGGCCA 1 cut(s) 339
Msp20I TGGCCA 1 cut(s) 339
MspI CCGG 1 cut(s) 847
MspR9I CCNGG 3 cut(s) 341, 803, 896
MunI CAATTG 1 cut(s) 357
MvaI CCWGG 3 cut(s) 341, 803, 896
NcoI CCATGG 1 cut(s) 334
NdeII GATC 4 cut(s) 62, 151, 276, 317
NlaIII CATG 4 cut(s) 188, 338, 971, 1057
NlaIV GGNNCC 1 cut(s) 278
NspV TTCGAA 1 cut(s) 366
PceI AGGCCT 1 cut(s) 814
PfeI GAWTC 3 cut(s) 299, 373, 834
PflMI CCANNNNNTGG 1 cut(s) 89
PfoI TCCNGGA 1 cut(s) 801
PkrI GCNGC 2 cut(s) 214, 396
PleI GAGTC 1 cut(s) 1054
PpsI GAGTC 1 cut(s) 1054
Psp6I CCWGG 3 cut(s) 339, 801, 894
PspGI CCWGG 3 cut(s) 339, 801, 894
PspN4I GGNNCC 1 cut(s) 278
PspPI GGNCC 2 cut(s) 829, 855
PstI CTGCAG 3 cut(s) 34, 274, 786
PsuI RGATCY 2 cut(s) 62, 276
RsaI GTAC 3 cut(s) 116, 556, 1003
RsaNI GTAC 3 cut(s) 115, 555, 1002
SatI GCNGC 2 cut(s) 213, 395
Sau3AI GATC 4 cut(s) 62, 151, 276, 317
Sau96I GGNCC 2 cut(s) 829, 855
SbfI CCTGCAGG 1 cut(s) 786
SchI GAGTC 1 cut(s) 1054
ScrFI CCNGG 3 cut(s) 341, 803, 896
SdaI CCTGCAGG 1 cut(s) 786
SduI GDGCHC 3 cut(s) 463, 627, 713
SfcI CTRYAG 3 cut(s) 30, 270, 782
SfuI TTCGAA 1 cut(s) 366
SinI GGWCC 1 cut(s) 855
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse8387I CCTGCAGG 1 cut(s) 786
Sse9I AATT 4 cut(s) 357, 634, 972, 1018
SseBI AGGCCT 1 cut(s) 814
SspMI CTAG 6 cut(s) 57, 110, 204, 558, 678, 690
StuI AGGCCT 1 cut(s) 814
StyD4I CCNGG 3 cut(s) 339, 801, 894
StyI CCWWGG 4 cut(s) 56, 253, 334, 815
TaaI ACNGT 2 cut(s) 730, 1113
TaiI ACGT 2 cut(s) 792, 1003
TaqI TCGA 3 cut(s) 366, 660, 910
TasI AATT 4 cut(s) 357, 634, 972, 1018
TfiI GAWTC 3 cut(s) 299, 373, 834
TscAI CASTG 1 cut(s) 495
TseI GCWGC 2 cut(s) 212, 394
TspDTI ATGAA 5 cut(s) 17, 201, 209, 956, 1011
TspGWI ACGGA 1 cut(s) 1058
TspRI CASTG 1 cut(s) 495
Van91I CCANNNNNTGG 1 cut(s) 89
VneI GTGCAC 1 cut(s) 709
VpaK11BI GGWCC 1 cut(s) 855
XcmI CCANNNNNNNNNTGG 1 cut(s) 749
XmaJI CCTAGG 1 cut(s) 56
XspI CTAG 6 cut(s) 57, 110, 204, 558, 678, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.