FvH4_4g07491

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000182
Physical Location & Seq
Reverse (-)
6864968 .. 6865965
998 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07491.t1

Sequence Viewer

Length: 816 bp
ATGGCCTTTAGCCCCAATGCAAGAGGTCATACCAGCTCTTCGCGAAATAGGAGACCAGTTATTTTCAACCCTTTTCCTAGACCCCAACAGGATCAACCTCCTTTTGTTACTAGGGTGGGAGATGTGAGAATAGCTGTAGAAATGGATCAAACCCGTGTCTTCGTACCAAGAAAATCCATGTCCCTCAAGGAACATCTTCTTAAGTTCTGTCTTGTGGCCAAGATTTTTGGCAAGAAAGTTTCCCCAAAAAAGATTGTTAAGAAGTGTAATTTTCTCTGGGCCTGCCTTCATGGCACTGTTAAGATGGTGCAAATGGCGAATGGGTGGTTTGCCTTGGAGTTTGTCCATATTCAAGACCTTGAATATGTCCTCTCCAATCGTCCTTGTGAGGAGGCAATTCTTCCGGTGGTGAAGGTGCTAGGTCGCTTCATCAAGCTAGACGACAGGACGAAGAACACTGAGAATTATATCTTTTCTCGTGCTTGCATGGAAATCGACCTACGAACCCCCCTGAAGCGTGTTCTTGTTGTCCAAGAAGAAGAGAAAGGTGACCTGGAGTTTGATCTATGTGGCAGCCACAAACATAAGATATGGGAGTGCCCTAAGAAGAAAAAGGAGAAGCATTTCGTTATGGTGGATAGGGCAGAGAGTGACAATGAAATTGAGCCAGATGAAGTGGATGTGGATCCGGAAATCAAACAGCTGGCCTCCACGGAAGTGATGATTTACTTTCCTCTTCCAGCCAAGAATGTCAGTCCTGTGCATGAAGAACCAATTAATGAGGATCTCAACCCTCCATCCCCGGGATGGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

272

Amino Acids

31.28

Weight (kDa)

8.39

Isoelectric Point (pI)

59.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 65 - 128 1.9e-06 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 43
AccIII TCCGGA 1 cut(s) 688
AclWI GGATC 5 cut(s) 99, 153, 680, 693, 792
AcoI YGGCCR 1 cut(s) 216
AcuI CTGAAG 1 cut(s) 533
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 2 cut(s) 803, 807
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 3 cut(s) 67, 353, 362
AjnI CCWGG 1 cut(s) 552
AleI CACNNNNGTG 1 cut(s) 716
AluBI AGCT 4 cut(s) 36, 134, 436, 703
AluI AGCT 4 cut(s) 36, 134, 436, 703
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 5 cut(s) 99, 153, 680, 693, 792
Ama87I CYCGRG 1 cut(s) 802
Aor13HI TCCGGA 1 cut(s) 688
AoxI GGCC 4 cut(s) 3, 216, 279, 705
ApeKI GCWGC 1 cut(s) 573
ArsI GACNNNNNNTTYG 2 cut(s) 542, 574
AseI ATTAAT 1 cut(s) 777
Asp700I GAANNNNTTC 2 cut(s) 195, 623
AspS9I GGNCC 1 cut(s) 279
AsuC2I CCSGG 2 cut(s) 803, 804
AsuHPI GGTGA 2 cut(s) 421, 560
AvaI CYCGRG 1 cut(s) 802
BaeGI GKGCMC 1 cut(s) 602
BalI TGGCCA 1 cut(s) 218
BamHI GGATCC 1 cut(s) 685
BauI CACGAG 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 585
BccI CCATC 3 cut(s) 298, 801, 805
BcgI CGANNNNNNTGC 2 cut(s) 475, 509
BciT130I CCWGG 1 cut(s) 554
BcnI CCSGG 2 cut(s) 803, 804
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 4 cut(s) 78, 111, 419, 437
BfmI CTRYAG 1 cut(s) 135
BfrI CTTAAG 1 cut(s) 200
BglI GCCNNNNNGGC 1 cut(s) 291
BisI GCNGC 1 cut(s) 574
BlsI GCNGC 1 cut(s) 575
Bme1390I CCNGG 3 cut(s) 554, 803, 804
BmeT110I CYCGRG 1 cut(s) 802
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 687
BmrFI CCNGG 3 cut(s) 554, 803, 804
BpiI GAAGAC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 803, 804
BsaBI GATNNNNATC 1 cut(s) 684
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 4 cut(s) 333, 711, 801, 802
BsaWI WCCGGW 2 cut(s) 403, 688
Bsc4I CCNNNNNNNGG 2 cut(s) 803, 807
Bse1I ACTGG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 684
BseAI TCCGGA 1 cut(s) 688
BseBI CCWGG 1 cut(s) 554
BseDI CCNNGG 4 cut(s) 333, 711, 801, 802
BseGI GGATG 3 cut(s) 685, 797, 812
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 2 cut(s) 803, 807
BseMII CTCAG 1 cut(s) 450
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 404
BseSI GKGCMC 1 cut(s) 602
BseXI GCAGC 1 cut(s) 585
Bsh1236I CGCG 1 cut(s) 43
BshFI GGCC 4 cut(s) 5, 218, 281, 707
BsiHKCI CYCGRG 1 cut(s) 802
BsiSI CCGG 3 cut(s) 404, 689, 803
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 803, 807
BsmAI GTCTC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 4 cut(s) 5, 218, 281, 707
Bso31I GGTCTC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 802
Bsp1286I GDGCHC 1 cut(s) 602
Bsp13I TCCGGA 1 cut(s) 688
Bsp143I GATC 5 cut(s) 91, 145, 562, 685, 784
Bsp68I TCGCGA 1 cut(s) 43
BspANI GGCC 4 cut(s) 5, 218, 281, 707
BspCNI CTCAG 1 cut(s) 451
BspEI TCCGGA 1 cut(s) 688
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 687
BspPI GGATC 5 cut(s) 99, 153, 680, 693, 792
BspQI GCTCTTC 1 cut(s) 43
BspTI CTTAAG 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 4 cut(s) 333, 711, 801, 802
BssMI GATC 5 cut(s) 91, 145, 562, 685, 784
BssSI CACGAG 1 cut(s) 477
BssT1I CCWWGG 1 cut(s) 333
Bst2BI CACGAG 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 3 cut(s) 43, 534, 741
BstAFI CTTAAG 1 cut(s) 200
BstC8I GCNNGC 3 cut(s) 283, 484, 705
BstDEI CTNAG 2 cut(s) 459, 603
BstDSI CCRYGG 1 cut(s) 711
BstEII GGTNACC 1 cut(s) 548
BstF5I GGATG 3 cut(s) 685, 797, 812
BstFNI CGCG 1 cut(s) 43
BstKTI GATC 5 cut(s) 94, 148, 565, 688, 787
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 5 cut(s) 91, 145, 562, 685, 784
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 1 cut(s) 554
BstPI GGTNACC 1 cut(s) 548
BstSCI CCNGG 3 cut(s) 552, 801, 802
BstSFI CTRYAG 1 cut(s) 135
BstSLI GKGCMC 1 cut(s) 602
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 585
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 2 cut(s) 685, 784
BstYI RGATCY 2 cut(s) 685, 784
BsuRI GGCC 4 cut(s) 5, 218, 281, 707
BtgI CCRYGG 1 cut(s) 711
BtsCI GGATG 3 cut(s) 685, 797, 812
BtsIMutI CAGTG 2 cut(s) 294, 456
BtuMI TCGCGA 1 cut(s) 43
Cac8I GCNNGC 3 cut(s) 283, 484, 705
Cfr13I GGNCC 1 cut(s) 279
Cfr9I CCCGGG 1 cut(s) 802
Csp6I GTAC 1 cut(s) 164
CviAII CATG 4 cut(s) 178, 290, 487, 764
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 2 cut(s) 459, 603
DpnI GATC 5 cut(s) 93, 147, 564, 687, 786
DpnII GATC 5 cut(s) 91, 145, 562, 685, 784
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 3 cut(s) 43, 534, 741
EarI CTCTTC 3 cut(s) 43, 534, 741
Eco130I CCWWGG 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 533
Eco88I CYCGRG 1 cut(s) 802
Eco91I GGTNACC 1 cut(s) 548
EcoO65I GGTNACC 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 4 cut(s) 181, 293, 490, 767
FaqI GGGAC 1 cut(s) 166
FatI CATG 4 cut(s) 177, 289, 486, 763
Fnu4HI GCNGC 1 cut(s) 574
FokI GGATG 2 cut(s) 692, 784
Fsp4HI GCNGC 1 cut(s) 574
FspBI CTAG 4 cut(s) 78, 111, 419, 437
GluI GCNGC 1 cut(s) 574
GsuI CTGGAG 1 cut(s) 575
HaeIII GGCC 4 cut(s) 5, 218, 281, 707
HapII CCGG 3 cut(s) 404, 689, 803
Hin1II CATG 4 cut(s) 181, 293, 490, 767
HpaII CCGG 3 cut(s) 404, 689, 803
HphI GGTGA 2 cut(s) 421, 560
Hpy188III TCNNGA 3 cut(s) 42, 353, 689
HpyAV CCTTC 2 cut(s) 296, 406
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 4 cut(s) 20, 310, 486, 763
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 2 cut(s) 459, 603
Hsp92II CATG 4 cut(s) 181, 293, 490, 767
Kpn2I TCCGGA 1 cut(s) 688
Kzo9I GATC 5 cut(s) 91, 145, 562, 685, 784
LguI GCTCTTC 1 cut(s) 43
Lsp1109I GCAGC 1 cut(s) 585
MaeI CTAG 4 cut(s) 78, 111, 419, 437
MaeIII GTNAC 3 cut(s) 106, 548, 650
MalI GATC 5 cut(s) 93, 147, 564, 687, 786
MboI GATC 5 cut(s) 91, 145, 562, 685, 784
MflI RGATCY 2 cut(s) 685, 784
MhlI GDGCHC 1 cut(s) 602
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 5 cut(s) 268, 396, 463, 660, 774
MluNI TGGCCA 1 cut(s) 218
Mox20I TGGCCA 1 cut(s) 218
MroI TCCGGA 1 cut(s) 688
MroXI GAANNNNTTC 2 cut(s) 195, 623
MscI TGGCCA 1 cut(s) 218
MseI TTAA 5 cut(s) 201, 258, 300, 777, 814
MslI CAYNNNNRTG 1 cut(s) 716
Msp20I TGGCCA 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 703
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 3 cut(s) 404, 689, 803
MspR9I CCNGG 3 cut(s) 554, 803, 804
MvaI CCWGG 1 cut(s) 554
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 291
NciI CCSGG 2 cut(s) 803, 804
NdeII GATC 5 cut(s) 91, 145, 562, 685, 784
NlaIII CATG 4 cut(s) 181, 293, 490, 767
NlaIV GGNNCC 1 cut(s) 687
NmuCI GTSAC 2 cut(s) 548, 650
NruI TCGCGA 1 cut(s) 43
OliI CACNNNNGTG 1 cut(s) 716
PciSI GCTCTTC 1 cut(s) 43
PdmI GAANNNNTTC 2 cut(s) 195, 623
PkrI GCNGC 1 cut(s) 575
PshBI ATTAAT 1 cut(s) 777
Psp6I CCWGG 1 cut(s) 552
PspEI GGTNACC 1 cut(s) 548
PspGI CCWGG 1 cut(s) 552
PspN4I GGNNCC 1 cut(s) 687
PspPI GGNCC 1 cut(s) 279
PsuI RGATCY 2 cut(s) 685, 784
PvuII CAGCTG 1 cut(s) 703
RruI TCGCGA 1 cut(s) 43
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 716
SapI GCTCTTC 1 cut(s) 43
SaqAI TTAA 5 cut(s) 201, 258, 300, 777, 814
SatI GCNGC 1 cut(s) 574
Sau3AI GATC 5 cut(s) 91, 145, 562, 685, 784
Sau96I GGNCC 1 cut(s) 279
ScrFI CCNGG 3 cut(s) 554, 803, 804
SduI GDGCHC 1 cut(s) 602
SfcI CTRYAG 1 cut(s) 135
SmaI CCCGGG 1 cut(s) 804
SmiMI CAYNNNNRTG 1 cut(s) 716
SmlI CTYRAG 2 cut(s) 185, 200
SmoI CTYRAG 2 cut(s) 185, 200
Sse9I AATT 5 cut(s) 268, 396, 463, 660, 774
SspMI CTAG 4 cut(s) 78, 111, 419, 437
StyD4I CCNGG 3 cut(s) 552, 801, 802
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 495
TasI AATT 5 cut(s) 268, 396, 463, 660, 774
Tru1I TTAA 5 cut(s) 201, 258, 300, 777, 814
Tru9I TTAA 5 cut(s) 201, 258, 300, 777, 814
TscAI CASTG 2 cut(s) 301, 463
TseFI GTSAC 2 cut(s) 548, 650
TseI GCWGC 1 cut(s) 573
Tsp45I GTSAC 2 cut(s) 548, 650
TspDTI ATGAA 5 cut(s) 278, 418, 672, 687, 780
TspGWI ACGGA 1 cut(s) 728
TspMI CCCGGG 1 cut(s) 802
TspRI CASTG 2 cut(s) 301, 463
Vha464I CTTAAG 1 cut(s) 200
VspI ATTAAT 1 cut(s) 777
XcmI CCANNNNNNNNNTGG 1 cut(s) 804
XmaI CCCGGG 1 cut(s) 802
XmnI GAANNNNTTC 2 cut(s) 195, 623
XspI CTAG 4 cut(s) 78, 111, 419, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.