Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 19 - 101 | 9e-13 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 57, 290 |
| AcsI | RAATTY | 1 cut(s) | 82 |
| AfaI | GTAC | 1 cut(s) | 359 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 14 |
| AjnI | CCWGG | 1 cut(s) | 13 |
| AluBI | AGCT | 1 cut(s) | 104 |
| AluI | AGCT | 1 cut(s) | 104 |
| Alw26I | GTCTC | 1 cut(s) | 103 |
| AlwI | GGATC | 2 cut(s) | 57, 290 |
| ApoI | RAATTY | 1 cut(s) | 82 |
| AspA2I | CCTAGG | 1 cut(s) | 299 |
| AsuHPI | GGTGA | 1 cut(s) | 44 |
| AvrII | CCTAGG | 1 cut(s) | 299 |
| BanII | GRGCYC | 1 cut(s) | 286 |
| BccI | CCATC | 1 cut(s) | 157 |
| BciT130I | CCWGG | 1 cut(s) | 15 |
| BcoDI | GTCTC | 1 cut(s) | 103 |
| BfaI | CTAG | 1 cut(s) | 300 |
| BlnI | CCTAGG | 1 cut(s) | 299 |
| Bme1390I | CCNGG | 1 cut(s) | 15 |
| BmiI | GGNNCC | 2 cut(s) | 285, 341 |
| BmrFI | CCNGG | 1 cut(s) | 15 |
| BpmI | CTGGAG | 1 cut(s) | 385 |
| BsaI | GGTCTC | 1 cut(s) | 103 |
| BsaJI | CCNNGG | 4 cut(s) | 13, 192, 242, 299 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 14 |
| Bse1I | ACTGG | 1 cut(s) | 368 |
| BseBI | CCWGG | 1 cut(s) | 15 |
| BseDI | CCNNGG | 4 cut(s) | 13, 192, 242, 299 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 14 |
| BseMII | CTCAG | 1 cut(s) | 114 |
| BseNI | ACTGG | 1 cut(s) | 368 |
| BslFI | GGGAC | 1 cut(s) | 166 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 14 |
| BsmAI | GTCTC | 1 cut(s) | 103 |
| BsmFI | GGGAC | 1 cut(s) | 166 |
| Bso31I | GGTCTC | 1 cut(s) | 103 |
| Bsp1286I | GDGCHC | 1 cut(s) | 286 |
| Bsp143I | GATC | 3 cut(s) | 49, 111, 295 |
| BspCNI | CTCAG | 1 cut(s) | 113 |
| BspLI | GGNNCC | 2 cut(s) | 285, 341 |
| BspPI | GGATC | 2 cut(s) | 57, 290 |
| BspTNI | GGTCTC | 1 cut(s) | 103 |
| BsrI | ACTGG | 1 cut(s) | 368 |
| BssECI | CCNNGG | 4 cut(s) | 13, 192, 242, 299 |
| BssMI | GATC | 3 cut(s) | 49, 111, 295 |
| BssT1I | CCWWGG | 3 cut(s) | 192, 242, 299 |
| Bst2UI | CCWGG | 1 cut(s) | 15 |
| Bst4CI | ACNGT | 1 cut(s) | 157 |
| BstC8I | GCNNGC | 2 cut(s) | 146, 231 |
| BstDEI | CTNAG | 1 cut(s) | 100 |
| BstKTI | GATC | 3 cut(s) | 52, 114, 298 |
| BstMAI | GTCTC | 1 cut(s) | 103 |
| BstMBI | GATC | 3 cut(s) | 49, 111, 295 |
| BstNI | CCWGG | 1 cut(s) | 15 |
| BstSCI | CCNGG | 1 cut(s) | 13 |
| BtsIMutI | CAGTG | 1 cut(s) | 162 |
| Cac8I | GCNNGC | 2 cut(s) | 146, 231 |
| Csp6I | GTAC | 1 cut(s) | 358 |
| CviJI | RGCY | 6 cut(s) | 104, 144, 233, 284, 340, 377 |
| CviKI_1 | RGCY | 6 cut(s) | 104, 144, 233, 284, 340, 377 |
| CviQI | GTAC | 1 cut(s) | 358 |
| DdeI | CTNAG | 1 cut(s) | 100 |
| DpnI | GATC | 3 cut(s) | 51, 113, 297 |
| DpnII | GATC | 3 cut(s) | 49, 111, 295 |
| Eco130I | CCWWGG | 3 cut(s) | 192, 242, 299 |
| Eco24I | GRGCYC | 1 cut(s) | 286 |
| Eco31I | GGTCTC | 1 cut(s) | 103 |
| EcoRII | CCWGG | 1 cut(s) | 13 |
| EcoT14I | CCWWGG | 3 cut(s) | 192, 242, 299 |
| EcoT38I | GRGCYC | 1 cut(s) | 286 |
| ErhI | CCWWGG | 3 cut(s) | 192, 242, 299 |
| FaiI | YATR | 3 cut(s) | 108, 270, 331 |
| FaqI | GGGAC | 1 cut(s) | 166 |
| FriOI | GRGCYC | 1 cut(s) | 286 |
| FspBI | CTAG | 1 cut(s) | 300 |
| GsuI | CTGGAG | 1 cut(s) | 385 |
| HphI | GGTGA | 1 cut(s) | 44 |
| Hpy188I | TCNGA | 2 cut(s) | 119, 416 |
| Hpy188III | TCNNGA | 1 cut(s) | 274 |
| Hpy99I | CGWCG | 1 cut(s) | 292 |
| HpyAV | CCTTC | 3 cut(s) | 80, 252, 367 |
| HpyCH4III | ACNGT | 1 cut(s) | 157 |
| HpyCH4V | TGCA | 2 cut(s) | 126, 148 |
| HpyF3I | CTNAG | 1 cut(s) | 100 |
| Kzo9I | GATC | 3 cut(s) | 49, 111, 295 |
| LmnI | GCTCC | 2 cut(s) | 289, 345 |
| LpnPI | CCDG | 7 cut(s) | 27, 143, 158, 215, 259, 322, 349 |
| MaeI | CTAG | 1 cut(s) | 300 |
| MaeIII | GTNAC | 1 cut(s) | 37 |
| MalI | GATC | 3 cut(s) | 51, 113, 297 |
| MboI | GATC | 3 cut(s) | 49, 111, 295 |
| MboII | GAAGA | 1 cut(s) | 172 |
| MhlI | GDGCHC | 1 cut(s) | 286 |
| MluCI | AATT | 1 cut(s) | 82 |
| MmeI | TCCRAC | 1 cut(s) | 406 |
| MnlI | CCTC | 1 cut(s) | 298 |
| MseI | TTAA | 4 cut(s) | 57, 168, 252, 345 |
| MspR9I | CCNGG | 1 cut(s) | 15 |
| MvaI | CCWGG | 1 cut(s) | 15 |
| NdeII | GATC | 3 cut(s) | 49, 111, 295 |
| NlaIV | GGNNCC | 2 cut(s) | 285, 341 |
| Psp6I | CCWGG | 1 cut(s) | 13 |
| PspGI | CCWGG | 1 cut(s) | 13 |
| PspN4I | GGNNCC | 2 cut(s) | 285, 341 |
| RsaI | GTAC | 1 cut(s) | 359 |
| RsaNI | GTAC | 1 cut(s) | 358 |
| SaqAI | TTAA | 4 cut(s) | 57, 168, 252, 345 |
| Sau3AI | GATC | 3 cut(s) | 49, 111, 295 |
| ScrFI | CCNGG | 1 cut(s) | 15 |
| SduI | GDGCHC | 1 cut(s) | 286 |
| SetI | ASST | 7 cut(s) | 19, 57, 99, 106, 174, 210, 399 |
| Sse9I | AATT | 1 cut(s) | 82 |
| SspMI | CTAG | 1 cut(s) | 300 |
| StyD4I | CCNGG | 1 cut(s) | 13 |
| StyI | CCWWGG | 3 cut(s) | 192, 242, 299 |
| TaaI | ACNGT | 1 cut(s) | 157 |
| TasI | AATT | 1 cut(s) | 82 |
| TatI | WGTACW | 1 cut(s) | 357 |
| Tru1I | TTAA | 4 cut(s) | 57, 168, 252, 345 |
| Tru9I | TTAA | 4 cut(s) | 57, 168, 252, 345 |
| TscAI | CASTG | 1 cut(s) | 162 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 276 |
| TspRI | CASTG | 1 cut(s) | 162 |
| XapI | RAATTY | 1 cut(s) | 82 |
| XmaJI | CCTAGG | 1 cut(s) | 299 |
| XspI | CTAG | 1 cut(s) | 300 |