RLG00000018745

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000182
Physical Location & Seq
Forward (+)
35170831 .. 35171724
894 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018745

Sequence Viewer

Length: 819 bp
ATGGTGGATCGTACGGAATTAGATGAGGATGTGGAACCAGTACCAGAGGAGATTGATCCAAAGCTGCAAGAATTAATATCTGAAAAAGTCATGTTGTACTTCCCGCATCCTCTCGTTCAGAGGAAGGGAAAAGAAAAGAAGGCTGATAACATCATTAAGCTGAACTCCAAGAAGGATGCTGGCCATGGGAAAGGGAAAGCAACCCAAGGAGGAATGGTGCAGAGAGGAAAAAGCTATAGGGATGTTACCAAAGGTGCTGGTAACATTATTATTGGAAAAAGTGGGAAGGAAGGCCTAGGTCTGGAGAACCAAGCTGGAAGTGACTCTGACAGTGAGGGTGACAGGGTGAGTTCCTCCTCTAGTTCTACTTCTAGCTCTTCTTTAAATGAAATATCTTATGAAGATCTTAAGAAAATTGCTAACATATATGATTTGGATAACTCATCCCTCGATCCCATTGATCTAAATGAGAGGATTTACTACTCCCCCACTAACCTTGTGGATTACTACTATGCTAATTTTAGCTCCCCCTTGAGATTGCAGTATGAGAGTTACAAGGAAGCAAAAAAAGCTGGAATGGATGAGCATATGGACCTCAGATATCTGATTAATGAGAATCAATTGGATGTGGGAACCAAAGACAAGAACCCTGGTAGGAGCCCAAGCAGTAGCTCAGCTGTGGTTAAGATGCAAATCAGTGATGGAGCTAATTACAGGAGCCCAAAAAAGAGGACTAGAGAGATGATTGAGGATATGAACATGGCTGAGGCAGATGACAAGGAGGCGGGCAGCCCCTCCTCTGTCAACAATGCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.11

Weight (kDa)

5.11

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 104, 785
AclWI GGATC 3 cut(s) 15, 50, 446
AcoI YGGCCR 1 cut(s) 181
AfaI GTAC 3 cut(s) 13, 42, 98
AfiI CCNNNNNNNGG 1 cut(s) 301
AflII CTTAAG 1 cut(s) 407
AjnI CCWGG 1 cut(s) 649
AlwI GGATC 3 cut(s) 15, 50, 446
AoxI GGCC 2 cut(s) 181, 292
ApeKI GCWGC 2 cut(s) 64, 789
AseI ATTAAT 2 cut(s) 74, 609
AspA2I CCTAGG 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 592
AsuHPI GGTGA 2 cut(s) 350, 358
AvaII GGWCC 1 cut(s) 592
AvrII CCTAGG 1 cut(s) 295
BalI TGGCCA 1 cut(s) 183
BanII GRGCYC 2 cut(s) 662, 722
BbvCI CCTCAGC 1 cut(s) 765
BbvI GCAGC 2 cut(s) 51, 801
BccI CCATC 1 cut(s) 695
BciT130I CCWGG 1 cut(s) 651
BfaI CTAG 4 cut(s) 296, 360, 372, 735
BfmI CTRYAG 1 cut(s) 235
BfrI CTTAAG 1 cut(s) 407
BglII AGATCT 1 cut(s) 403
BisI GCNGC 2 cut(s) 65, 790
BlnI CCTAGG 1 cut(s) 295
BlpI GCTNAGC 1 cut(s) 673
BlsI GCNGC 2 cut(s) 66, 791
Bme1390I CCNGG 1 cut(s) 651
Bme18I GGWCC 1 cut(s) 592
BmgT120I GGNCC 1 cut(s) 592
BmiI GGNNCC 4 cut(s) 36, 634, 659, 719
BmrFI CCNGG 1 cut(s) 651
BmsI GCATC 3 cut(s) 115, 166, 678
BpmI CTGGAG 1 cut(s) 323
Bpu10I CCTNAGC 1 cut(s) 765
Bpu1102I GCTNAGC 1 cut(s) 673
BpuEI CTTGAG 1 cut(s) 553
BsaBI GATNNNNATC 1 cut(s) 692
BsaJI CCNNGG 4 cut(s) 184, 205, 295, 649
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 692
BseBI CCWGG 1 cut(s) 651
BseDI CCNNGG 4 cut(s) 184, 205, 295, 649
BseGI GGATG 7 cut(s) 34, 106, 181, 247, 443, 586, 631
BseJI GATNNNNATC 1 cut(s) 692
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 3 cut(s) 610, 687, 756
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 3 cut(s) 62, 346, 787
BseXI GCAGC 2 cut(s) 51, 801
BsgI GTGCAG 1 cut(s) 239
BshFI GGCC 2 cut(s) 183, 294
BsiWI CGTACG 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 301
BsnI GGCC 2 cut(s) 183, 294
Bsp1286I GDGCHC 2 cut(s) 662, 722
Bsp143I GATC 5 cut(s) 7, 55, 403, 451, 460
Bsp1720I GCTNAGC 1 cut(s) 673
Bsp19I CCATGG 1 cut(s) 184
BspACI CCGC 2 cut(s) 104, 785
BspANI GGCC 2 cut(s) 183, 294
BspCNI CTCAG 3 cut(s) 609, 686, 757
BspLI GGNNCC 4 cut(s) 36, 634, 659, 719
BspPI GGATC 3 cut(s) 15, 50, 446
BspQI GCTCTTC 1 cut(s) 382
BspTI CTTAAG 1 cut(s) 407
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 4 cut(s) 184, 205, 295, 649
BssMI GATC 5 cut(s) 7, 55, 403, 451, 460
BssT1I CCWWGG 3 cut(s) 184, 205, 295
Bst2UI CCWGG 1 cut(s) 651
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 382
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 2 cut(s) 181, 787
BstDEI CTNAG 3 cut(s) 596, 673, 765
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 7 cut(s) 34, 106, 181, 247, 443, 586, 631
BstKTI GATC 5 cut(s) 10, 58, 406, 454, 463
BstMBI GATC 5 cut(s) 7, 55, 403, 451, 460
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstNI CCWGG 1 cut(s) 651
BstSCI CCNGG 1 cut(s) 649
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 51, 801
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 2 cut(s) 183, 294
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 7 cut(s) 34, 106, 181, 247, 443, 586, 631
BtsIMutI CAGTG 2 cut(s) 337, 703
Cac8I GCNNGC 2 cut(s) 181, 787
Cfr13I GGNCC 1 cut(s) 592
Csp6I GTAC 3 cut(s) 12, 41, 97
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviAII CATG 3 cut(s) 91, 185, 760
CviQI GTAC 3 cut(s) 12, 41, 97
DdeI CTNAG 3 cut(s) 596, 673, 765
DpnI GATC 5 cut(s) 9, 57, 405, 453, 462
DpnII GATC 5 cut(s) 7, 55, 403, 451, 460
DraI TTTAAA 1 cut(s) 384
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Eco130I CCWWGG 3 cut(s) 184, 205, 295
Eco147I AGGCCT 1 cut(s) 294
Eco24I GRGCYC 2 cut(s) 662, 722
Eco32I GATATC 1 cut(s) 602
Eco47I GGWCC 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 649
EcoRV GATATC 1 cut(s) 602
EcoT14I CCWWGG 3 cut(s) 184, 205, 295
EcoT38I GRGCYC 2 cut(s) 662, 722
ErhI CCWWGG 3 cut(s) 184, 205, 295
FaeI CATG 3 cut(s) 94, 188, 763
FatI CATG 3 cut(s) 90, 184, 759
FauI CCCGC 2 cut(s) 111, 778
FauNDI CATATG 1 cut(s) 588
Fnu4HI GCNGC 2 cut(s) 65, 790
FokI GGATG 7 cut(s) 41, 93, 188, 254, 430, 593, 638
FriOI GRGCYC 2 cut(s) 662, 722
Fsp4HI GCNGC 2 cut(s) 65, 790
FspBI CTAG 4 cut(s) 296, 360, 372, 735
GluI GCNGC 2 cut(s) 65, 790
GsuI CTGGAG 1 cut(s) 323
HaeIII GGCC 2 cut(s) 183, 294
Hin1II CATG 3 cut(s) 94, 188, 763
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HinfI GANTC 2 cut(s) 323, 616
HphI GGTGA 2 cut(s) 350, 358
Hpy166II GTNNAC 1 cut(s) 805
Hpy188I TCNGA 5 cut(s) 82, 120, 328, 599, 606
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 1 cut(s) 805
HpyAV CCTTC 5 cut(s) 118, 133, 166, 280, 284
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 5 cut(s) 67, 220, 541, 691, 812
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpyF3I CTNAG 3 cut(s) 596, 673, 765
Hsp92II CATG 3 cut(s) 94, 188, 763
Kzo9I GATC 5 cut(s) 7, 55, 403, 451, 460
LguI GCTCTTC 1 cut(s) 382
LmnI GCTCC 4 cut(s) 530, 657, 704, 717
Lsp1109I GCAGC 2 cut(s) 51, 801
LweI GCATC 3 cut(s) 115, 166, 678
MaeI CTAG 4 cut(s) 296, 360, 372, 735
MaeIII GTNAC 5 cut(s) 244, 260, 320, 338, 551
MalI GATC 5 cut(s) 9, 57, 405, 453, 462
MboI GATC 5 cut(s) 7, 55, 403, 451, 460
MboII GAAGA 2 cut(s) 369, 413
MfeI CAATTG 1 cut(s) 620
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 2 cut(s) 662, 722
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 6 cut(s) 17, 71, 414, 517, 620, 709
MluNI TGGCCA 1 cut(s) 183
MlyI GAGTC 1 cut(s) 317
Mox20I TGGCCA 1 cut(s) 183
MscI TGGCCA 1 cut(s) 183
MseI TTAA 6 cut(s) 74, 156, 383, 408, 609, 684
Msp20I TGGCCA 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 677
MspCI CTTAAG 1 cut(s) 407
MspR9I CCNGG 1 cut(s) 651
MunI CAATTG 1 cut(s) 620
MvaI CCWGG 1 cut(s) 651
MwoI GCNNNNNNNGC 1 cut(s) 569
NcoI CCATGG 1 cut(s) 184
NdeI CATATG 1 cut(s) 588
NdeII GATC 5 cut(s) 7, 55, 403, 451, 460
NlaIII CATG 3 cut(s) 94, 188, 763
NlaIV GGNNCC 4 cut(s) 36, 634, 659, 719
NmuCI GTSAC 2 cut(s) 320, 338
PceI AGGCCT 1 cut(s) 294
PciSI GCTCTTC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 616
Pfl23II CGTACG 1 cut(s) 11
PkrI GCNGC 2 cut(s) 66, 791
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PshBI ATTAAT 2 cut(s) 74, 609
Psp6I CCWGG 1 cut(s) 649
PspGI CCWGG 1 cut(s) 649
PspLI CGTACG 1 cut(s) 11
PspN4I GGNNCC 4 cut(s) 36, 634, 659, 719
PspPI GGNCC 1 cut(s) 592
PsuI RGATCY 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 3 cut(s) 13, 42, 98
RsaNI GTAC 3 cut(s) 12, 41, 97
SapI GCTCTTC 1 cut(s) 382
SaqAI TTAA 6 cut(s) 74, 156, 383, 408, 609, 684
SatI GCNGC 2 cut(s) 65, 790
Sau3AI GATC 5 cut(s) 7, 55, 403, 451, 460
Sau96I GGNCC 1 cut(s) 592
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 651
SduI GDGCHC 2 cut(s) 662, 722
SfaNI GCATC 3 cut(s) 115, 166, 678
SfcI CTRYAG 1 cut(s) 235
SinI GGWCC 1 cut(s) 592
SmlI CTYRAG 2 cut(s) 407, 532
SmoI CTYRAG 2 cut(s) 407, 532
Sse9I AATT 6 cut(s) 17, 71, 414, 517, 620, 709
SseBI AGGCCT 1 cut(s) 294
SsiI CCGC 2 cut(s) 104, 785
SspMI CTAG 4 cut(s) 296, 360, 372, 735
StuI AGGCCT 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 649
StyI CCWWGG 3 cut(s) 184, 205, 295
TaaI ACNGT 1 cut(s) 332
TaqI TCGA 1 cut(s) 450
TasI AATT 6 cut(s) 17, 71, 414, 517, 620, 709
TatI WGTACW 1 cut(s) 96
TfiI GAWTC 1 cut(s) 616
Tru1I TTAA 6 cut(s) 74, 156, 383, 408, 609, 684
Tru9I TTAA 6 cut(s) 74, 156, 383, 408, 609, 684
TscAI CASTG 2 cut(s) 337, 703
TseFI GTSAC 2 cut(s) 320, 338
TseI GCWGC 2 cut(s) 64, 789
Tsp45I GTSAC 2 cut(s) 320, 338
TspDTI ATGAA 3 cut(s) 402, 414, 770
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 2 cut(s) 337, 703
Vha464I CTTAAG 1 cut(s) 407
VpaK11BI GGWCC 1 cut(s) 592
VspI ATTAAT 2 cut(s) 74, 609
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmaJI CCTAGG 1 cut(s) 295
XspI CTAG 4 cut(s) 296, 360, 372, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.