Rh7AG127400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000182
Physical Location & Seq
Forward (+)
10073134 .. 10074200
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG127400.1

Sequence Viewer

Length: 642 bp
ATGATCGCTACTGAAGGCTGCGAACTTCTTCGCCTTCCGTCCCAAGATTTCTACCTCATGCCTCTACATTCTCGATTAACCCAGGGAGTAAATCTTATCTTATTTCTAGCTTCTATTTTTTTTCCTTGTGATGTTGTTGTTTGCCATGCTTGTGATTTAATTGGTCTTGGTGTCAGCCCTGGGCTACGTAGACGATTGATCTTCTCTGTGTTTCTTGATTACGTAAATATAGATATTCTGCTTCTTGATTTTGCTTCCTTTTCTAGTTTCCTAGGAGATTTGTTGGATTCCCCTTCTCGAAAGTCCAATGCCAGAACCGTGGGGGGTAGCAACTTTGTGTGGCCTCCAAGGTCCCTCCTCAGTATAAATTACCTGGCCGTTATCCTGTTTATTCACCCTGCCTTCTACCTTCTTAGCATCCTGTTTGCTACCCACATCATGGCTTTCAACCCCGTTTCTCAAGCTCACCTGGCTACTGCCATTCGAAAACCTTTTCCAACTCACCAATATTTCCCTTTCCCTCAAAACCAGAATGGGTCTGAGTCCATCCCAGTTATTATAGGCGATAATACCATCAATATTGATAGGTTTGCTATCCACGTTGATATGCCACCACCCCCTCCAGATTTTGTTGAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.76

Weight (kDa)

5.91

Isoelectric Point (pI)

65.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 439
AccI GTMKAC 1 cut(s) 190
AcoI YGGCCR 1 cut(s) 375
AcuI CTGAAG 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 439
AgsI TTSAA 2 cut(s) 448, 635
AjnI CCWGG 4 cut(s) 81, 178, 372, 468
AluBI AGCT 2 cut(s) 110, 464
AluI AGCT 2 cut(s) 110, 464
AoxI GGCC 2 cut(s) 341, 375
ApeKI GCWGC 1 cut(s) 18
Asp700I GAANNNNTTC 1 cut(s) 27
AspA2I CCTAGG 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 351
AsuHPI GGTGA 3 cut(s) 386, 458, 494
AsuII TTCGAA 1 cut(s) 484
AvaII GGWCC 1 cut(s) 351
AvrII CCTAGG 1 cut(s) 271
BbvI GCAGC 1 cut(s) 5
BccI CCATC 2 cut(s) 554, 581
BceAI ACGGC 1 cut(s) 362
BciT130I CCWGG 4 cut(s) 83, 180, 374, 470
BfaI CTAG 3 cut(s) 107, 264, 272
BisI GCNGC 1 cut(s) 19
BlnI CCTAGG 1 cut(s) 271
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 4 cut(s) 83, 180, 374, 470
Bme18I GGWCC 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 1 cut(s) 353
BmrFI CCNGG 4 cut(s) 83, 180, 374, 470
BmrI ACTGGG 1 cut(s) 545
BmsI GCATC 1 cut(s) 426
BmuI ACTGGG 1 cut(s) 545
BpmI CTGGAG 1 cut(s) 606
Bpu14I TTCGAA 1 cut(s) 484
BpuEI CTTGAG 1 cut(s) 444
BsaAI YACGTR 2 cut(s) 188, 223
BsaJI CCNNGG 7 cut(s) 81, 82, 178, 179, 271, 318, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 439
Bse1I ACTGG 1 cut(s) 551
BseBI CCWGG 4 cut(s) 83, 180, 374, 470
BseDI CCNNGG 7 cut(s) 81, 82, 178, 179, 271, 318, 347
BseGI GGATG 2 cut(s) 417, 546
BseLI CCNNNNNNNGG 1 cut(s) 439
BseMII CTCAG 2 cut(s) 373, 531
BseNI ACTGG 1 cut(s) 551
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 5
BshFI GGCC 2 cut(s) 343, 377
BslFI GGGAC 2 cut(s) 25, 337
BslI CCNNNNNNNGG 1 cut(s) 439
BsmFI GGGAC 2 cut(s) 25, 337
BsnI GGCC 2 cut(s) 343, 377
Bsp119I TTCGAA 1 cut(s) 484
Bsp143I GATC 2 cut(s) 3, 198
BspANI GGCC 2 cut(s) 343, 377
BspCNI CTCAG 2 cut(s) 372, 532
BspLI GGNNCC 1 cut(s) 353
BspT104I TTCGAA 1 cut(s) 484
BsrI ACTGG 1 cut(s) 551
BssECI CCNNGG 7 cut(s) 81, 82, 178, 179, 271, 318, 347
BssMI GATC 2 cut(s) 3, 198
BssT1I CCWWGG 2 cut(s) 271, 347
Bst2UI CCWGG 4 cut(s) 83, 180, 374, 470
Bst4CI ACNGT 1 cut(s) 319
BstBAI YACGTR 2 cut(s) 188, 223
BstBI TTCGAA 1 cut(s) 484
BstDEI CTNAG 3 cut(s) 359, 413, 540
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 2 cut(s) 417, 546
BstKTI GATC 2 cut(s) 6, 201
BstMBI GATC 2 cut(s) 3, 198
BstMWI GCNNNNNNNGC 1 cut(s) 470
BstNI CCWGG 4 cut(s) 83, 180, 374, 470
BstSCI CCNGG 4 cut(s) 81, 178, 372, 468
BstSNI TACGTA 2 cut(s) 188, 223
BstV1I GCAGC 1 cut(s) 5
BstXI CCANNNNNNTGG 1 cut(s) 319
BsuRI GGCC 2 cut(s) 343, 377
BtgI CCRYGG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 417, 546
Cfr13I GGNCC 1 cut(s) 351
CviAII CATG 3 cut(s) 58, 146, 439
CviJI RGCY 9 cut(s) 18, 110, 177, 184, 343, 377, 443, 464, 473
CviKI_1 RGCY 9 cut(s) 18, 110, 177, 184, 343, 377, 443, 464, 473
DdeI CTNAG 3 cut(s) 359, 413, 540
DpnI GATC 2 cut(s) 5, 200
DpnII GATC 2 cut(s) 3, 198
EaeI YGGCCR 1 cut(s) 375
Eco105I TACGTA 2 cut(s) 188, 223
Eco130I CCWWGG 2 cut(s) 271, 347
Eco47I GGWCC 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 351
EcoRII CCWGG 4 cut(s) 81, 178, 372, 468
EcoT14I CCWWGG 2 cut(s) 271, 347
ErhI CCWWGG 2 cut(s) 271, 347
FaeI CATG 3 cut(s) 61, 149, 442
FaiI YATR 8 cut(s) 59, 147, 230, 365, 440, 560, 608, 640
FaqI GGGAC 2 cut(s) 25, 337
FatI CATG 3 cut(s) 57, 145, 438
FblI GTMKAC 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 2 cut(s) 404, 533
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 3 cut(s) 107, 264, 272
GluI GCNGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 2 cut(s) 343, 377
Hin1II CATG 3 cut(s) 61, 149, 442
HinfI GANTC 2 cut(s) 287, 542
HphI GGTGA 3 cut(s) 386, 458, 494
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 541
Hpy188III TCNNGA 5 cut(s) 72, 215, 245, 297, 623
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 5 cut(s) 8, 44, 303, 412, 419
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 3 cut(s) 187, 222, 600
HpyF10VI GCNNNNNNNGC 1 cut(s) 470
HpyF3I CTNAG 3 cut(s) 359, 413, 540
HpySE526I ACGT 3 cut(s) 187, 222, 600
Hsp92II CATG 3 cut(s) 61, 149, 442
Kzo9I GATC 2 cut(s) 3, 198
Lsp1109I GCAGC 1 cut(s) 5
LweI GCATC 1 cut(s) 426
MaeI CTAG 3 cut(s) 107, 264, 272
MaeII ACGT 3 cut(s) 187, 222, 600
MalI GATC 2 cut(s) 5, 200
MboI GATC 2 cut(s) 3, 198
MboII GAAGA 2 cut(s) 20, 193
MluCI AATT 2 cut(s) 159, 367
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 2 cut(s) 264, 521
MnlI CCTC 7 cut(s) 65, 72, 354, 365, 368, 531, 630
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 2 cut(s) 77, 158
MslI CAYNNNNRTG 1 cut(s) 150
MspR9I CCNGG 4 cut(s) 83, 180, 374, 470
MvaI CCWGG 4 cut(s) 83, 180, 374, 470
MwoI GCNNNNNNNGC 1 cut(s) 470
NdeII GATC 2 cut(s) 3, 198
NlaIII CATG 3 cut(s) 61, 149, 442
NlaIV GGNNCC 1 cut(s) 353
NspV TTCGAA 1 cut(s) 484
PasI CCCWGGG 2 cut(s) 82, 179
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 439
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
Ppu21I YACGTR 2 cut(s) 188, 223
PpuMI RGGWCCY 1 cut(s) 351
Psp5II RGGWCCY 1 cut(s) 351
Psp6I CCWGG 4 cut(s) 81, 178, 372, 468
PspGI CCWGG 4 cut(s) 81, 178, 372, 468
PspN4I GGNNCC 1 cut(s) 353
PspPI GGNCC 1 cut(s) 351
PspPPI RGGWCCY 1 cut(s) 351
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 2 cut(s) 77, 158
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 2 cut(s) 3, 198
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 4 cut(s) 83, 180, 374, 470
SfaNI GCATC 1 cut(s) 426
SfuI TTCGAA 1 cut(s) 484
SinI GGWCC 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
SnaBI TACGTA 2 cut(s) 188, 223
Sse9I AATT 2 cut(s) 159, 367
SspI AATATT 2 cut(s) 509, 580
SspMI CTAG 3 cut(s) 107, 264, 272
StyD4I CCNGG 4 cut(s) 81, 178, 372, 468
StyI CCWWGG 2 cut(s) 271, 347
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 3 cut(s) 190, 225, 603
TaqI TCGA 3 cut(s) 73, 298, 484
TasI AATT 2 cut(s) 159, 367
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 2 cut(s) 77, 158
Tru9I TTAA 2 cut(s) 77, 158
TseI GCWGC 1 cut(s) 18
TspGWI ACGGA 1 cut(s) 27
Van91I CCANNNNNTGG 1 cut(s) 439
VpaK11BI GGWCC 1 cut(s) 351
XmaJI CCTAGG 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 3 cut(s) 107, 264, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.