Rh6AG187700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000182
Physical Location & Seq
Reverse (-)
33307797 .. 33308171
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG187700.1

Sequence Viewer

Length: 375 bp
ATGGTTGAGAGATTTGAAAATGAGCAGCAAGTCTACCCGGCTGAAATGGCAGACAATGAATTCATTAAATCTTTGCTTTCGAATGATATTTCCATAGTGTTCCTGCAACCAATGTTCAACTATTTTGACTACACTGTTGAGCATCCTTCTGCTCAAACTGGTTCCGAGGATCAAGGTGGAGAGAATGGCCCTTGGAGGGTGGTGTCTTGTAGGGGCAAGGGGAAAGGAAACTTCTACCCAAAGAATGGTGGTTTTGCTGCTGGACCAAATTATGGAAATGTCAAAGGATCCAATGTGGTACTGCTTGGGGTTTCCTTCAAAGATGTCACTAAAGGTAATGGGGAATCAAAAGGATTCTGTGGCGGTTGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.55

Weight (kDa)

5.09

Isoelectric Point (pI)

16.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 245, 272
AccI GTMKAC 1 cut(s) 33
AciI CCGC 1 cut(s) 363
AclWI GGATC 3 cut(s) 177, 282, 295
AcsI RAATTY 1 cut(s) 59
AfaI GTAC 1 cut(s) 300
AfiI CCNNNNNNNGG 3 cut(s) 196, 245, 272
AgsI TTSAA 3 cut(s) 17, 118, 319
AlwI GGATC 3 cut(s) 177, 282, 295
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 25, 257
ApoI RAATTY 1 cut(s) 59
AspS9I GGNCC 2 cut(s) 188, 263
AsuC2I CCSGG 1 cut(s) 38
AsuII TTCGAA 1 cut(s) 80
AvaII GGWCC 1 cut(s) 263
BamHI GGATCC 1 cut(s) 287
BbvI GCAGC 2 cut(s) 37, 244
BcnI CCSGG 1 cut(s) 38
BisI GCNGC 2 cut(s) 26, 258
BlsI GCNGC 2 cut(s) 27, 259
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 2 cut(s) 188, 263
BmiI GGNNCC 2 cut(s) 163, 289
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 151
Bpu14I TTCGAA 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 165, 191
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 245, 272
Bse1I ACTGG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 165, 191
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 3 cut(s) 196, 245, 272
BseNI ACTGG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 37, 244
BshFI GGCC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 196, 245, 272
BsnI GGCC 1 cut(s) 189
Bsp119I TTCGAA 1 cut(s) 80
Bsp143I GATC 2 cut(s) 169, 287
BspACI CCGC 1 cut(s) 363
BspANI GGCC 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 163, 289
BspPI GGATC 3 cut(s) 177, 282, 295
BspT104I TTCGAA 1 cut(s) 80
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 2 cut(s) 165, 191
BssMI GATC 2 cut(s) 169, 287
BssT1I CCWWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 80
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 2 cut(s) 172, 290
BstMBI GATC 2 cut(s) 169, 287
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 36
BstV1I GCAGC 2 cut(s) 37, 244
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 132
Cfr13I GGNCC 2 cut(s) 188, 263
Csp6I GTAC 1 cut(s) 299
CviJI RGCY 2 cut(s) 41, 189
CviKI_1 RGCY 2 cut(s) 41, 189
CviQI GTAC 1 cut(s) 299
DpnI GATC 2 cut(s) 171, 289
DpnII GATC 2 cut(s) 169, 287
Eco130I CCWWGG 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 191
FaiI YATR 2 cut(s) 95, 273
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 2 cut(s) 26, 258
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 2 cut(s) 26, 258
GluI GCNGC 2 cut(s) 26, 258
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 38
HinfI GANTC 2 cut(s) 344, 354
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 166
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 156, 325
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
Kzo9I GATC 2 cut(s) 169, 287
LpnPI CCDG 4 cut(s) 51, 116, 144, 246
Lsp1109I GCAGC 2 cut(s) 37, 244
LweI GCATC 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 325
MalI GATC 2 cut(s) 171, 289
MboI GATC 2 cut(s) 169, 287
MflI RGATCY 1 cut(s) 287
MluCI AATT 2 cut(s) 59, 268
MnlI CCTC 2 cut(s) 160, 189
MseI TTAA 1 cut(s) 66
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 47
NciI CCSGG 1 cut(s) 38
NdeII GATC 2 cut(s) 169, 287
NlaIV GGNNCC 2 cut(s) 163, 289
NmuCI GTSAC 1 cut(s) 325
NspV TTCGAA 1 cut(s) 80
PfeI GAWTC 2 cut(s) 344, 354
PflMI CCANNNNNTGG 2 cut(s) 245, 272
PkrI GCNGC 2 cut(s) 27, 259
PspN4I GGNNCC 2 cut(s) 163, 289
PspPI GGNCC 2 cut(s) 188, 263
PsuI RGATCY 1 cut(s) 287
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 26, 258
Sau3AI GATC 2 cut(s) 169, 287
Sau96I GGNCC 2 cut(s) 188, 263
ScrFI CCNGG 1 cut(s) 38
SetI ASST 2 cut(s) 178, 337
SfaNI GCATC 1 cut(s) 151
SfuI TTCGAA 1 cut(s) 80
SinI GGWCC 1 cut(s) 263
Sse9I AATT 2 cut(s) 59, 268
SsiI CCGC 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 80
TasI AATT 2 cut(s) 59, 268
TfiI GAWTC 2 cut(s) 344, 354
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 2 cut(s) 25, 257
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 2 cut(s) 52, 72
TspRI CASTG 1 cut(s) 139
Van91I CCANNNNNTGG 2 cut(s) 245, 272
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.