RLG00000014371

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000182
Physical Location & Seq
Forward (+)
52257930 .. 52258673
744 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014371

Sequence Viewer

Length: 618 bp
ATGAGGAAGAAAGAACAACACTTTGTCCTGGTTGATAAAGAGCAAGGTGATGATGATGTTGTACCACAAGACATGGAGGTGGACCCTAAGATTAAAGAGTTGGTAAAGAAGGCGTCCTCAACTGCACAAGACCCCAACACAACCCATGCTAACAAAGGGAAAGCTGAATCCAACAAGCGCAGCAATATTAAGCCAGGAATATCCTTCAAGGATGCTACTGTTGGCCATGGTACCATTGTCATAACAAACCCACCGGCTTTGTCAGGAAACAAGACCCCTATTGATTCCTCCAGTGAGGAGTTGGTGAGCGATTTTGATTCCAATGACTCTTCTATCTTATCTTACTCTTCTTTTCCTAAAATTGCTAAACTCTATGATTCTAATTTACTCACGGAACGGTACCATCTAGGAGAGATCTATTCTCCTACCGCTGCGGTTAATTATTTTTATTCTAATGATGCTGAACCCTTTATGCAGTTTGAAAACTTTAGTGATGCTAGGGCTTTTGACCTCATGAAGGATAATAGGGACAATCTGAATGAGTATGAAGTTAAGGTGATCAATGGCAAGTGGGTGATTATGATAGCTGAAAGTGACTCTGGAATGAGCTCTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.8

Weight (kDa)

4.88

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 230, 399
AccB1I GGYRCC 2 cut(s) 230, 399
AciI CCGC 2 cut(s) 429, 434
AcoI YGGCCR 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 113
AfaI GTAC 3 cut(s) 63, 232, 401
AfiI CCNNNNNNNGG 1 cut(s) 517
AgsI TTSAA 2 cut(s) 208, 482
AjnI CCWGG 2 cut(s) 27, 193
AluBI AGCT 3 cut(s) 164, 587, 609
AluI AGCT 3 cut(s) 164, 587, 609
Alw21I GWGCWC 1 cut(s) 611
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 2 cut(s) 180, 431
Asp718I GGTACC 2 cut(s) 230, 399
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 4 cut(s) 59, 316, 568, 586
AvaII GGWCC 1 cut(s) 82
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BalI TGGCCA 1 cut(s) 225
BanI GGYRCC 2 cut(s) 230, 399
BanII GRGCYC 1 cut(s) 611
Bbv12I GWGCWC 1 cut(s) 611
BbvI GCAGC 2 cut(s) 192, 418
BccI CCATC 1 cut(s) 411
BciT130I CCWGG 2 cut(s) 29, 195
BclI TGATCA 1 cut(s) 558
BfaI CTAG 3 cut(s) 407, 498, 616
BglII AGATCT 1 cut(s) 414
BisI GCNGC 2 cut(s) 181, 432
BlsI GCNGC 2 cut(s) 182, 433
Bme1390I CCNGG 2 cut(s) 29, 195
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 3 cut(s) 84, 232, 401
BmrFI CCNGG 2 cut(s) 29, 195
BmsI GCATC 3 cut(s) 202, 448, 484
BpmI CTGGAG 1 cut(s) 274
BsaHI GRCGYC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 517
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 291
BseBI CCWGG 2 cut(s) 29, 195
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 517
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 2 cut(s) 192, 418
BsgI GTGCAG 1 cut(s) 108
BshFI GGCC 1 cut(s) 225
BshNI GGYRCC 2 cut(s) 230, 399
BsiHKAI GWGCWC 1 cut(s) 611
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 1 cut(s) 517
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 611
Bsp143I GATC 2 cut(s) 414, 558
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 2 cut(s) 429, 434
BspANI GGCC 1 cut(s) 225
BspHI TCATGA 1 cut(s) 513
BspLI GGNNCC 3 cut(s) 84, 232, 401
BspT107I GGYRCC 2 cut(s) 230, 399
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 2 cut(s) 414, 558
BssNI GRCGYC 1 cut(s) 113
BssT1I CCWWGG 1 cut(s) 226
Bst2UI CCWGG 2 cut(s) 29, 195
Bst4CI ACNGT 2 cut(s) 220, 399
Bst6I CTCTTC 2 cut(s) 334, 352
BstACI GRCGYC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 87
BstDSI CCRYGG 1 cut(s) 226
BstENI CCTNNNNNAGG 1 cut(s) 515
BstF5I GGATG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 417, 561
BstMBI GATC 2 cut(s) 414, 558
BstNI CCWGG 2 cut(s) 29, 195
BstSCI CCNGG 2 cut(s) 27, 193
BstV1I GCAGC 2 cut(s) 192, 418
BstX2I RGATCY 1 cut(s) 414
BstYI RGATCY 1 cut(s) 414
BsuRI GGCC 1 cut(s) 225
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 298
CciI TCATGA 1 cut(s) 513
CfoI GCGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 82
CseI GACGC 1 cut(s) 102
Csp6I GTAC 3 cut(s) 62, 231, 400
CspCI CAANNNNNGTGG 2 cut(s) 240, 275
CviAII CATG 4 cut(s) 73, 146, 227, 514
CviJI RGCY 8 cut(s) 164, 193, 225, 257, 503, 587, 609, 615
CviKI_1 RGCY 8 cut(s) 164, 193, 225, 257, 503, 587, 609, 615
CviQI GTAC 3 cut(s) 62, 231, 400
DdeI CTNAG 1 cut(s) 87
DpnI GATC 2 cut(s) 416, 560
DpnII GATC 2 cut(s) 414, 558
EaeI YGGCCR 1 cut(s) 223
Eam1104I CTCTTC 2 cut(s) 334, 352
EarI CTCTTC 2 cut(s) 334, 352
Ecl136II GAGCTC 1 cut(s) 609
Eco130I CCWWGG 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 611
Eco47I GGWCC 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 609
EcoICRI GAGCTC 1 cut(s) 609
EcoNI CCTNNNNNAGG 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 27, 193
EcoT14I CCWWGG 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 611
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 4 cut(s) 76, 149, 230, 517
FaiI YATR 9 cut(s) 74, 147, 228, 242, 375, 473, 515, 546, 581
FaqI GGGAC 1 cut(s) 542
FatI CATG 4 cut(s) 72, 145, 226, 513
FbaI TGATCA 1 cut(s) 558
Fnu4HI GCNGC 2 cut(s) 181, 432
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 611
Fsp4HI GCNGC 2 cut(s) 181, 432
FspBI CTAG 3 cut(s) 407, 498, 616
GlaI GCGC 1 cut(s) 179
GluI GCNGC 2 cut(s) 181, 432
GsuI CTGGAG 1 cut(s) 274
HaeIII GGCC 1 cut(s) 225
HapII CCGG 1 cut(s) 254
HgaI GACGC 1 cut(s) 102
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 4 cut(s) 76, 149, 230, 517
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 6 cut(s) 167, 284, 317, 326, 377, 596
HpaII CCGG 1 cut(s) 254
HphI GGTGA 4 cut(s) 59, 316, 568, 586
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 537
Hpy188III TCNNGA 3 cut(s) 264, 514, 600
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 3 cut(s) 103, 214, 511
HpyCH4III ACNGT 2 cut(s) 220, 399
HpyCH4V TGCA 2 cut(s) 125, 475
HpyF3I CTNAG 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 4 cut(s) 76, 149, 230, 517
HspAI GCGC 1 cut(s) 178
KpnI GGTACC 2 cut(s) 234, 403
Ksp22I TGATCA 1 cut(s) 558
Kzo9I GATC 2 cut(s) 414, 558
LpnPI CCDG 9 cut(s) 14, 41, 180, 207, 249, 267, 304, 585, 597
Lsp1109I GCAGC 2 cut(s) 192, 418
LweI GCATC 3 cut(s) 202, 448, 484
MaeI CTAG 3 cut(s) 407, 498, 616
MaeIII GTNAC 1 cut(s) 593
MalI GATC 2 cut(s) 416, 560
MboI GATC 2 cut(s) 414, 558
MboII GAAGA 3 cut(s) 19, 321, 339
MflI RGATCY 1 cut(s) 414
MhlI GDGCHC 1 cut(s) 611
MlsI TGGCCA 1 cut(s) 225
MluCI AATT 3 cut(s) 360, 382, 439
MluNI TGGCCA 1 cut(s) 225
MlyI GAGTC 2 cut(s) 320, 590
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 5 cut(s) 70, 127, 289, 298, 521
Mox20I TGGCCA 1 cut(s) 225
MscI TGGCCA 1 cut(s) 225
MseI TTAA 4 cut(s) 93, 189, 438, 552
MslI CAYNNNNRTG 1 cut(s) 77
Msp20I TGGCCA 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 2 cut(s) 29, 195
MvaI CCWGG 2 cut(s) 29, 195
NcoI CCATGG 1 cut(s) 226
NdeII GATC 2 cut(s) 414, 558
NlaIII CATG 4 cut(s) 76, 149, 230, 517
NlaIV GGNNCC 3 cut(s) 84, 232, 401
NmuCI GTSAC 1 cut(s) 593
PagI TCATGA 1 cut(s) 513
PfeI GAWTC 4 cut(s) 167, 284, 317, 377
PkrI GCNGC 2 cut(s) 182, 433
PleI GAGTC 2 cut(s) 320, 590
PpsI GAGTC 2 cut(s) 320, 590
Psp124BI GAGCTC 1 cut(s) 611
Psp6I CCWGG 2 cut(s) 27, 193
PspGI CCWGG 2 cut(s) 27, 193
PspN4I GGNNCC 3 cut(s) 84, 232, 401
PspPI GGNCC 1 cut(s) 82
PsuI RGATCY 1 cut(s) 414
RsaI GTAC 3 cut(s) 63, 232, 401
RsaNI GTAC 3 cut(s) 62, 231, 400
RseI CAYNNNNRTG 1 cut(s) 77
SacI GAGCTC 1 cut(s) 611
SaqAI TTAA 4 cut(s) 93, 189, 438, 552
SatI GCNGC 2 cut(s) 181, 432
Sau3AI GATC 2 cut(s) 414, 558
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 2 cut(s) 320, 590
ScrFI CCNGG 2 cut(s) 29, 195
SduI GDGCHC 1 cut(s) 611
SetI ASST 7 cut(s) 49, 81, 166, 513, 558, 589, 611
SfaNI GCATC 3 cut(s) 202, 448, 484
SinI GGWCC 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 77
Sse9I AATT 3 cut(s) 360, 382, 439
SsiI CCGC 2 cut(s) 429, 434
SspI AATATT 1 cut(s) 187
SspMI CTAG 3 cut(s) 407, 498, 616
SstI GAGCTC 1 cut(s) 611
StyD4I CCNGG 2 cut(s) 27, 193
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 2 cut(s) 220, 399
TasI AATT 3 cut(s) 360, 382, 439
TfiI GAWTC 4 cut(s) 167, 284, 317, 377
Tru1I TTAA 4 cut(s) 93, 189, 438, 552
Tru9I TTAA 4 cut(s) 93, 189, 438, 552
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 593
TseI GCWGC 2 cut(s) 180, 431
Tsp45I GTSAC 1 cut(s) 593
TspDTI ATGAA 2 cut(s) 530, 561
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 82
XagI CCTNNNNNAGG 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XspI CTAG 3 cut(s) 407, 498, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.