Rh3AG258700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000182
Physical Location & Seq
Reverse (-)
28674731 .. 28675684
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG258700.1

Sequence Viewer

Length: 696 bp
ATGGAGATTGACCTCCGCATCCCTCTGAAAATGACCCTGATAGTCCGAGAAGAAGAGGAAGGGGATCTTCTTTTTGATCTTGTAGCTGAACCAGCAAGGCTCTTTCTCTCCTATGAAGCCATTTTCGAGGAGAAGGGTGATGATGATGTGGTACTGGAAGATATAGAGGTGGACCCTGAGGTCAAAGAGCTGATAAGTGAGAATGTGATGGTCTACTTCCCTCAGCCGGCTAAGGCAGATCTTGAGGCTAAATTGCAGGACCTGTCCAAAGAGGAACAACTCCACTCCTCCCCGGGCTGGACCCAAGTGCAAGCAAAAACAAGGAGGGCAACTACTGCTAACGTAAGGGATTCGACCACAAACTACACAAGGAAAGAAGACACCACTCTAAACAAGAAAAATATAGTCAAGCCGGGAATCTCTTTTAAGGATGCTACAATGGGCCAGGGCACCATTTCTATGGGCAATCGGCCTGCTTCTTCGGGAAACAAATCTCCTATTGGTTCCTCCAGTGAGGAGGTGTTTGAGAACTTTAGTGATGCTAGGGCTTCTGACCTTATGAAGGATAGTACTGACAAGATGAATGAGTATGAGGTCAAGATGATCAATGGAAAGAGGGTGATTATGATAGCTGAAAGTGACTCCGCAATGAGCTCTGGCTCGAAGAAAAGGACTAGGGAAATGACTGAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.9

Weight (kDa)

4.71

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AccB1I GGYRCC 1 cut(s) 449
AccI GTMKAC 1 cut(s) 213
AciI CCGC 2 cut(s) 16, 645
AclWI GGATC 1 cut(s) 72
AfaI GTAC 2 cut(s) 153, 571
AfiI CCNNNNNNNGG 3 cut(s) 226, 297, 562
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 4 cut(s) 86, 190, 632, 654
AluI AGCT 4 cut(s) 86, 190, 632, 654
Alw21I GWGCWC 1 cut(s) 656
AlwI GGATC 1 cut(s) 72
AlwNI CAGNNNCTG 1 cut(s) 262
Ama87I CYCGRG 1 cut(s) 292
AoxI GGCC 2 cut(s) 442, 470
AspS9I GGNCC 4 cut(s) 172, 259, 300, 442
AsuC2I CCSGG 3 cut(s) 293, 294, 414
AsuHPI GGTGA 2 cut(s) 149, 631
AvaI CYCGRG 1 cut(s) 292
AvaII GGWCC 3 cut(s) 172, 259, 300
AxyI CCTNAGG 1 cut(s) 177
BaeGI GKGCMC 1 cut(s) 452
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 656
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 656
BbvCI CCTCAGC 1 cut(s) 222
BccI CCATC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 446
BclI TGATCA 1 cut(s) 603
BcnI CCSGG 3 cut(s) 293, 294, 414
BfaI CTAG 2 cut(s) 543, 675
BglII AGATCT 1 cut(s) 238
BmcAI AGTACT 1 cut(s) 571
Bme1390I CCNGG 4 cut(s) 293, 294, 414, 446
Bme18I GGWCC 3 cut(s) 172, 259, 300
BmeT110I CYCGRG 1 cut(s) 292
BmgT120I GGNCC 4 cut(s) 172, 259, 300, 442
BmiI GGNNCC 4 cut(s) 174, 302, 451, 505
BmrFI CCNGG 4 cut(s) 293, 294, 414, 446
BmsI GCATC 3 cut(s) 27, 421, 529
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 493
Bpu10I CCTNAGC 2 cut(s) 222, 231
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 3 cut(s) 293, 294, 414
BsaJI CCNNGG 3 cut(s) 291, 292, 445
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 297, 562
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 2 cut(s) 159, 510
Bse21I CCTNAGG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 654
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 3 cut(s) 291, 292, 445
BseGI GGATG 2 cut(s) 18, 436
BseLI CCNNNNNNNGG 3 cut(s) 226, 297, 562
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 3 cut(s) 168, 236, 678
BseNI ACTGG 2 cut(s) 159, 510
BseRI GAGGAG 3 cut(s) 143, 277, 530
BseSI GKGCMC 1 cut(s) 452
BshFI GGCC 2 cut(s) 444, 472
BshNI GGYRCC 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 656
BsiHKCI CYCGRG 1 cut(s) 292
BsiSI CCGG 3 cut(s) 227, 293, 413
BslI CCNNNNNNNGG 3 cut(s) 226, 297, 562
BsnI GGCC 2 cut(s) 444, 472
BsoBI CYCGRG 1 cut(s) 292
Bsp1286I GDGCHC 2 cut(s) 452, 656
Bsp143I GATC 4 cut(s) 64, 76, 238, 603
BspACI CCGC 2 cut(s) 16, 645
BspANI GGCC 2 cut(s) 444, 472
BspCNI CTCAG 3 cut(s) 169, 235, 679
BspLI GGNNCC 4 cut(s) 174, 302, 451, 505
BspPI GGATC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 449
BsrDI GCAATG 1 cut(s) 654
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 2 cut(s) 159, 510
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 3 cut(s) 291, 292, 445
BssMI GATC 4 cut(s) 64, 76, 238, 603
Bst2UI CCWGG 1 cut(s) 446
Bst6I CTCTTC 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 335
BstC8I GCNNGC 3 cut(s) 228, 312, 474
BstDEI CTNAG 4 cut(s) 177, 222, 231, 687
BstENI CCTNNNNNAGG 1 cut(s) 560
BstF5I GGATG 2 cut(s) 18, 436
BstKTI GATC 4 cut(s) 67, 79, 241, 606
BstMBI GATC 4 cut(s) 64, 76, 238, 603
BstMWI GCNNNNNNNGC 2 cut(s) 92, 335
BstNI CCWGG 1 cut(s) 446
BstSCI CCNGG 4 cut(s) 291, 292, 412, 444
BstSLI GKGCMC 1 cut(s) 452
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 2 cut(s) 64, 238
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 2 cut(s) 64, 238
Bsu36I CCTNAGG 1 cut(s) 177
BsuRI GGCC 2 cut(s) 444, 472
BtsCI GGATG 2 cut(s) 18, 436
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 3 cut(s) 228, 312, 474
CaiI CAGNNNCTG 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 4 cut(s) 172, 259, 300, 442
Cfr9I CCCGGG 1 cut(s) 292
Csp6I GTAC 2 cut(s) 152, 570
CviQI GTAC 2 cut(s) 152, 570
DdeI CTNAG 4 cut(s) 177, 222, 231, 687
DpnI GATC 4 cut(s) 66, 78, 240, 605
DpnII GATC 4 cut(s) 64, 76, 238, 603
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 654
Eco24I GRGCYC 1 cut(s) 656
Eco47I GGWCC 3 cut(s) 172, 259, 300
Eco53kI GAGCTC 1 cut(s) 654
Eco81I CCTNAGG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 654
EcoNI CCTNNNNNAGG 1 cut(s) 560
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 444
EcoT38I GRGCYC 1 cut(s) 656
FaiI YATR 7 cut(s) 114, 164, 404, 461, 560, 591, 626
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FbaI TGATCA 1 cut(s) 603
FblI GTMKAC 1 cut(s) 213
FokI GGATG 2 cut(s) 5, 443
FriOI GRGCYC 1 cut(s) 656
FspBI CTAG 2 cut(s) 543, 675
GsuI CTGGAG 1 cut(s) 493
HaeIII GGCC 2 cut(s) 444, 472
HapII CCGG 3 cut(s) 227, 293, 413
HinfI GANTC 3 cut(s) 350, 417, 641
HpaII CCGG 3 cut(s) 227, 293, 413
HphI GGTGA 2 cut(s) 149, 631
Hpy166II GTNNAC 2 cut(s) 172, 214
Hpy188I TCNGA 3 cut(s) 27, 47, 553
Hpy188III TCNNGA 3 cut(s) 242, 483, 598
Hpy8I GTNNAC 2 cut(s) 172, 214
HpyAV CCTTC 3 cut(s) 53, 127, 556
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 2 cut(s) 256, 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 335
HpyF3I CTNAG 4 cut(s) 177, 222, 231, 687
HpySE526I ACGT 1 cut(s) 342
KroI GCCGGC 1 cut(s) 226
KroNI GCCGGC 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 4 cut(s) 64, 76, 238, 603
LweI GCATC 3 cut(s) 27, 421, 529
MaeI CTAG 2 cut(s) 543, 675
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 638
MalI GATC 4 cut(s) 66, 78, 240, 605
MboI GATC 4 cut(s) 64, 76, 238, 603
MboII GAAGA 7 cut(s) 59, 62, 65, 170, 389, 471, 676
MflI RGATCY 2 cut(s) 64, 238
MhlI GDGCHC 2 cut(s) 452, 656
MluCI AATT 1 cut(s) 251
MlyI GAGTC 1 cut(s) 635
MroNI GCCGGC 1 cut(s) 226
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 1 cut(s) 458
MspI CCGG 3 cut(s) 227, 293, 413
MspR9I CCNGG 4 cut(s) 293, 294, 414, 446
MvaI CCWGG 1 cut(s) 446
MwoI GCNNNNNNNGC 2 cut(s) 92, 335
NaeI GCCGGC 1 cut(s) 228
NciI CCSGG 3 cut(s) 293, 294, 414
NdeII GATC 4 cut(s) 64, 76, 238, 603
NgoMIV GCCGGC 1 cut(s) 226
NlaIV GGNNCC 4 cut(s) 174, 302, 451, 505
NmuCI GTSAC 1 cut(s) 638
PdiI GCCGGC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 350, 417
PleI GAGTC 1 cut(s) 635
PpsI GAGTC 1 cut(s) 635
PpuMI RGGWCCY 1 cut(s) 259
Psp124BI GAGCTC 1 cut(s) 656
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 4 cut(s) 174, 302, 451, 505
PspPI GGNCC 4 cut(s) 172, 259, 300, 442
PspPPI RGGWCCY 1 cut(s) 259
PstNI CAGNNNCTG 1 cut(s) 262
PsuI RGATCY 2 cut(s) 64, 238
RsaI GTAC 2 cut(s) 153, 571
RsaNI GTAC 2 cut(s) 152, 570
RseI CAYNNNNRTG 1 cut(s) 458
SacI GAGCTC 1 cut(s) 656
SaqAI TTAA 1 cut(s) 426
Sau3AI GATC 4 cut(s) 64, 76, 238, 603
Sau96I GGNCC 4 cut(s) 172, 259, 300, 442
ScaI AGTACT 1 cut(s) 571
SchI GAGTC 1 cut(s) 635
ScrFI CCNGG 4 cut(s) 293, 294, 414, 446
SduI GDGCHC 2 cut(s) 452, 656
SfaNI GCATC 3 cut(s) 27, 421, 529
SinI GGWCC 3 cut(s) 172, 259, 300
SmaI CCCGGG 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 1 cut(s) 251
SsiI CCGC 2 cut(s) 16, 645
SspMI CTAG 2 cut(s) 543, 675
SstI GAGCTC 1 cut(s) 656
StyD4I CCNGG 4 cut(s) 291, 292, 412, 444
TaiI ACGT 1 cut(s) 345
TaqI TCGA 3 cut(s) 126, 353, 662
TasI AATT 1 cut(s) 251
TatI WGTACW 1 cut(s) 569
TfiI GAWTC 2 cut(s) 350, 417
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 638
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 3 cut(s) 129, 575, 596
TspMI CCCGGG 1 cut(s) 292
TspRI CASTG 1 cut(s) 517
VpaK11BI GGWCC 3 cut(s) 172, 259, 300
XagI CCTNNNNNAGG 1 cut(s) 560
XmaI CCCGGG 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 2 cut(s) 543, 675
ZrmI AGTACT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.