Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 691 |
| AciI | CCGC | 7 cut(s) | 179, 268, 446, 457, 1103, 1175, 1253 |
| AclWI | GGATC | 2 cut(s) | 676, 1167 |
| AcoI | YGGCCR | 1 cut(s) | 846 |
| AcuI | CTGAAG | 1 cut(s) | 273 |
| AfaI | GTAC | 2 cut(s) | 1081, 1321 |
| AgsI | TTSAA | 6 cut(s) | 197, 464, 784, 1066, 1235, 1243 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1298 |
| AhlI | ACTAGT | 2 cut(s) | 583, 1316 |
| AjnI | CCWGG | 4 cut(s) | 27, 291, 534, 1191 |
| AluBI | AGCT | 7 cut(s) | 229, 251, 778, 1040, 1201, 1250, 1330 |
| AluI | AGCT | 7 cut(s) | 229, 251, 778, 1040, 1201, 1250, 1330 |
| Alw26I | GTCTC | 2 cut(s) | 700, 978 |
| AlwI | GGATC | 2 cut(s) | 676, 1167 |
| AoxI | GGCC | 2 cut(s) | 386, 846 |
| ApeKI | GCWGC | 2 cut(s) | 1091, 1250 |
| AspLEI | GCGC | 1 cut(s) | 1096 |
| AspS9I | GGNCC | 3 cut(s) | 373, 610, 1105 |
| AsuC2I | CCSGG | 1 cut(s) | 1053 |
| AsuHPI | GGTGA | 5 cut(s) | 137, 168, 947, 1208, 1229 |
| AvaII | GGWCC | 3 cut(s) | 373, 610, 1105 |
| BalI | TGGCCA | 1 cut(s) | 848 |
| BbvCI | CCTCAGC | 1 cut(s) | 1099 |
| BbvI | GCAGC | 2 cut(s) | 1078, 1237 |
| BccI | CCATC | 3 cut(s) | 944, 1079, 1291 |
| BciT130I | CCWGG | 4 cut(s) | 29, 293, 536, 1193 |
| BclI | TGATCA | 2 cut(s) | 145, 1324 |
| BcnI | CCSGG | 1 cut(s) | 1053 |
| BcoDI | GTCTC | 2 cut(s) | 700, 978 |
| BcuI | ACTAGT | 2 cut(s) | 583, 1316 |
| BfaI | CTAG | 4 cut(s) | 584, 606, 1290, 1317 |
| BglII | AGATCT | 1 cut(s) | 1286 |
| BisI | GCNGC | 3 cut(s) | 447, 1092, 1251 |
| BlsI | GCNGC | 3 cut(s) | 448, 1093, 1252 |
| BmcAI | AGTACT | 1 cut(s) | 1321 |
| Bme1390I | CCNGG | 5 cut(s) | 29, 293, 536, 1053, 1193 |
| Bme18I | GGWCC | 3 cut(s) | 373, 610, 1105 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1298 |
| BmgT120I | GGNCC | 3 cut(s) | 373, 610, 1105 |
| BmiI | GGNNCC | 4 cut(s) | 374, 611, 1107, 1182 |
| BmrFI | CCNGG | 5 cut(s) | 29, 293, 536, 1053, 1193 |
| BmsI | GCATC | 5 cut(s) | 343, 433, 458, 965, 1162 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1099 |
| BpuMI | CCSGG | 1 cut(s) | 1053 |
| Bsa29I | ATCGAT | 1 cut(s) | 1170 |
| BsaI | GGTCTC | 1 cut(s) | 700 |
| BsaJI | CCNNGG | 5 cut(s) | 27, 389, 534, 891, 1192 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1328, 1358 |
| Bse1I | ACTGG | 3 cut(s) | 190, 515, 1266 |
| BseBI | CCWGG | 4 cut(s) | 29, 293, 536, 1193 |
| BseCI | ATCGAT | 1 cut(s) | 1170 |
| BseDI | CCNNGG | 5 cut(s) | 27, 389, 534, 891, 1192 |
| BseMII | CTCAG | 1 cut(s) | 1113 |
| BseNI | ACTGG | 3 cut(s) | 190, 515, 1266 |
| BseRI | GAGGAG | 1 cut(s) | 1193 |
| BseXI | GCAGC | 2 cut(s) | 1078, 1237 |
| BseYI | CCCAGC | 4 cut(s) | 154, 247, 1226, 1246 |
| Bsh1285I | CGRYCG | 1 cut(s) | 56 |
| BshFI | GGCC | 2 cut(s) | 388, 848 |
| BshVI | ATCGAT | 1 cut(s) | 1170 |
| BsiEI | CGRYCG | 1 cut(s) | 56 |
| BsiSI | CCGG | 2 cut(s) | 836, 1052 |
| BslFI | GGGAC | 1 cut(s) | 1091 |
| BsmAI | GTCTC | 2 cut(s) | 700, 978 |
| BsmFI | GGGAC | 1 cut(s) | 1091 |
| BsmI | GAATGC | 1 cut(s) | 1375 |
| BsnI | GGCC | 2 cut(s) | 388, 848 |
| Bso31I | GGTCTC | 1 cut(s) | 700 |
| Bsp143I | GATC | 6 cut(s) | 145, 367, 681, 1159, 1286, 1324 |
| BspACI | CCGC | 7 cut(s) | 179, 268, 446, 457, 1103, 1175, 1253 |
| BspANI | GGCC | 2 cut(s) | 388, 848 |
| BspCNI | CTCAG | 1 cut(s) | 1112 |
| BspDI | ATCGAT | 1 cut(s) | 1170 |
| BspLI | GGNNCC | 4 cut(s) | 374, 611, 1107, 1182 |
| BspPI | GGATC | 2 cut(s) | 676, 1167 |
| BspTNI | GGTCTC | 1 cut(s) | 700 |
| BsrI | ACTGG | 3 cut(s) | 190, 515, 1266 |
| BssECI | CCNNGG | 5 cut(s) | 27, 389, 534, 891, 1192 |
| BssMI | GATC | 6 cut(s) | 145, 367, 681, 1159, 1286, 1324 |
| BssT1I | CCWWGG | 2 cut(s) | 389, 891 |
| Bst2UI | CCWGG | 4 cut(s) | 29, 293, 536, 1193 |
| Bst4CI | ACNGT | 4 cut(s) | 57, 215, 652, 829 |
| BstC8I | GCNNGC | 2 cut(s) | 227, 1332 |
| BstDEI | CTNAG | 3 cut(s) | 1099, 1213, 1374 |
| BstEII | GGTNACC | 1 cut(s) | 674 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 930 |
| BstHHI | GCGC | 1 cut(s) | 1096 |
| BstKTI | GATC | 6 cut(s) | 148, 370, 684, 1162, 1289, 1327 |
| BstMAI | GTCTC | 2 cut(s) | 700, 978 |
| BstMBI | GATC | 6 cut(s) | 145, 367, 681, 1159, 1286, 1324 |
| BstMCI | CGRYCG | 1 cut(s) | 56 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 845, 953, 1100, 1340 |
| BstNI | CCWGG | 4 cut(s) | 29, 293, 536, 1193 |
| BstNSI | RCATGY | 1 cut(s) | 601 |
| BstPI | GGTNACC | 1 cut(s) | 674 |
| BstSCI | CCNGG | 5 cut(s) | 27, 291, 534, 1051, 1191 |
| BstV1I | GCAGC | 2 cut(s) | 1078, 1237 |
| BstX2I | RGATCY | 1 cut(s) | 1286 |
| BstYI | RGATCY | 1 cut(s) | 1286 |
| Bsu15I | ATCGAT | 1 cut(s) | 1170 |
| BsuRI | GGCC | 2 cut(s) | 388, 848 |
| BsuTUI | ATCGAT | 1 cut(s) | 1170 |
| BtsIMutI | CAGTG | 3 cut(s) | 183, 211, 355 |
| Cac8I | GCNNGC | 2 cut(s) | 227, 1332 |
| CfoI | GCGC | 1 cut(s) | 1096 |
| Cfr13I | GGNCC | 3 cut(s) | 373, 610, 1105 |
| ClaI | ATCGAT | 1 cut(s) | 1170 |
| CseI | GACGC | 1 cut(s) | 1079 |
| Csp6I | GTAC | 2 cut(s) | 1080, 1320 |
| CviAII | CATG | 2 cut(s) | 598, 1309 |
| CviQI | GTAC | 2 cut(s) | 1080, 1320 |
| DdeI | CTNAG | 3 cut(s) | 1099, 1213, 1374 |
| DpnI | GATC | 6 cut(s) | 147, 369, 683, 1161, 1288, 1326 |
| DpnII | GATC | 6 cut(s) | 145, 367, 681, 1159, 1286, 1324 |
| DraI | TTTAAA | 2 cut(s) | 67, 1362 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1298 |
| EaeI | YGGCCR | 1 cut(s) | 846 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1298 |
| Eco130I | CCWWGG | 2 cut(s) | 389, 891 |
| Eco147I | AGGCCT | 1 cut(s) | 388 |
| Eco31I | GGTCTC | 1 cut(s) | 700 |
| Eco47I | GGWCC | 3 cut(s) | 373, 610, 1105 |
| Eco57I | CTGAAG | 1 cut(s) | 273 |
| Eco91I | GGTNACC | 1 cut(s) | 674 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 930 |
| EcoO109I | RGGNCCY | 2 cut(s) | 373, 610 |
| EcoO65I | GGTNACC | 1 cut(s) | 674 |
| EcoRII | CCWGG | 4 cut(s) | 27, 291, 534, 1191 |
| EcoT14I | CCWWGG | 2 cut(s) | 389, 891 |
| ErhI | CCWWGG | 2 cut(s) | 389, 891 |
| FaeI | CATG | 2 cut(s) | 601, 1312 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 509, 541 |
| FaqI | GGGAC | 1 cut(s) | 1091 |
| FatI | CATG | 2 cut(s) | 597, 1308 |
| FauI | CCCGC | 2 cut(s) | 464, 1246 |
| FbaI | TGATCA | 2 cut(s) | 145, 1324 |
| Fnu4HI | GCNGC | 3 cut(s) | 447, 1092, 1251 |
| Fsp4HI | GCNGC | 3 cut(s) | 447, 1092, 1251 |
| FspBI | CTAG | 4 cut(s) | 584, 606, 1290, 1317 |
| GlaI | GCGC | 1 cut(s) | 1095 |
| GluI | GCNGC | 3 cut(s) | 447, 1092, 1251 |
| GsaI | CCCAGC | 4 cut(s) | 158, 251, 1230, 1250 |
| HaeIII | GGCC | 2 cut(s) | 388, 848 |
| HapII | CCGG | 2 cut(s) | 836, 1052 |
| HgaI | GACGC | 1 cut(s) | 1079 |
| HhaI | GCGC | 1 cut(s) | 1096 |
| Hin1II | CATG | 2 cut(s) | 601, 1312 |
| Hin6I | GCGC | 1 cut(s) | 1094 |
| HinP1I | GCGC | 1 cut(s) | 1094 |
| HincII | GTYRAC | 2 cut(s) | 118, 265 |
| HindII | GTYRAC | 2 cut(s) | 118, 265 |
| HindIII | AAGCTT | 1 cut(s) | 1038 |
| HinfI | GANTC | 3 cut(s) | 521, 868, 1142 |
| HpaI | GTTAAC | 1 cut(s) | 118 |
| HpaII | CCGG | 2 cut(s) | 836, 1052 |
| HphI | GGTGA | 5 cut(s) | 137, 168, 947, 1208, 1229 |
| Hpy166II | GTNNAC | 2 cut(s) | 118, 265 |
| Hpy188I | TCNGA | 2 cut(s) | 1138, 1353 |
| Hpy188III | TCNNGA | 4 cut(s) | 48, 613, 975, 1290 |
| Hpy8I | GTNNAC | 2 cut(s) | 118, 265 |
| Hpy99I | CGWCG | 1 cut(s) | 54 |
| HpyAV | CCTTC | 4 cut(s) | 118, 290, 926, 1358 |
| HpyCH4III | ACNGT | 4 cut(s) | 57, 215, 652, 829 |
| HpyCH4V | TGCA | 3 cut(s) | 597, 648, 878 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 845, 953, 1100, 1340 |
| HpyF3I | CTNAG | 3 cut(s) | 1099, 1213, 1374 |
| Hsp92II | CATG | 2 cut(s) | 601, 1312 |
| HspAI | GCGC | 1 cut(s) | 1094 |
| Ksp22I | TGATCA | 2 cut(s) | 145, 1324 |
| KspAI | GTTAAC | 1 cut(s) | 118 |
| Kzo9I | GATC | 6 cut(s) | 145, 367, 681, 1159, 1286, 1324 |
| LmnI | GCTCC | 3 cut(s) | 922, 953, 1180 |
| Lsp1109I | GCAGC | 2 cut(s) | 1078, 1237 |
| LweI | GCATC | 5 cut(s) | 343, 433, 458, 965, 1162 |
| MaeI | CTAG | 4 cut(s) | 584, 606, 1290, 1317 |
| MaeIII | GTNAC | 2 cut(s) | 174, 674 |
| MalI | GATC | 6 cut(s) | 147, 369, 683, 1161, 1288, 1326 |
| MboI | GATC | 6 cut(s) | 145, 367, 681, 1159, 1286, 1324 |
| MboII | GAAGA | 4 cut(s) | 33, 403, 444, 488 |
| MflI | RGATCY | 1 cut(s) | 1286 |
| MlsI | TGGCCA | 1 cut(s) | 848 |
| MluCI | AATT | 2 cut(s) | 668, 790 |
| MluNI | TGGCCA | 1 cut(s) | 848 |
| MlyI | GAGTC | 2 cut(s) | 530, 877 |
| MmeI | TCCRAC | 1 cut(s) | 944 |
| Mox20I | TGGCCA | 1 cut(s) | 848 |
| MscI | TGGCCA | 1 cut(s) | 848 |
| MseI | TTAA | 9 cut(s) | 66, 117, 206, 527, 588, 774, 864, 1046, 1361 |
| Msp20I | TGGCCA | 1 cut(s) | 848 |
| MspA1I | CMGCKG | 4 cut(s) | 251, 270, 1103, 1250 |
| MspI | CCGG | 2 cut(s) | 836, 1052 |
| MspR9I | CCNGG | 5 cut(s) | 29, 293, 536, 1053, 1193 |
| MssI | GTTTAAAC | 1 cut(s) | 67 |
| Mva1269I | GAATGC | 1 cut(s) | 1375 |
| MvaI | CCWGG | 4 cut(s) | 29, 293, 536, 1193 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 845, 953, 1100, 1340 |
| NciI | CCSGG | 1 cut(s) | 1053 |
| NdeII | GATC | 6 cut(s) | 145, 367, 681, 1159, 1286, 1324 |
| NlaIII | CATG | 2 cut(s) | 601, 1312 |
| NlaIV | GGNNCC | 4 cut(s) | 374, 611, 1107, 1182 |
| NmuCI | GTSAC | 1 cut(s) | 174 |
| NspI | RCATGY | 1 cut(s) | 601 |
| PceI | AGGCCT | 1 cut(s) | 388 |
| PctI | GAATGC | 1 cut(s) | 1375 |
| PfeI | GAWTC | 1 cut(s) | 1142 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 691 |
| PkrI | GCNGC | 3 cut(s) | 448, 1093, 1252 |
| PleI | GAGTC | 2 cut(s) | 529, 876 |
| PmeI | GTTTAAAC | 1 cut(s) | 67 |
| PpsI | GAGTC | 2 cut(s) | 529, 876 |
| PpuMI | RGGWCCY | 2 cut(s) | 373, 610 |
| Psp5II | RGGWCCY | 2 cut(s) | 373, 610 |
| Psp6I | CCWGG | 4 cut(s) | 27, 291, 534, 1191 |
| PspEI | GGTNACC | 1 cut(s) | 674 |
| PspFI | CCCAGC | 4 cut(s) | 154, 247, 1226, 1246 |
| PspGI | CCWGG | 4 cut(s) | 27, 291, 534, 1191 |
| PspN4I | GGNNCC | 4 cut(s) | 374, 611, 1107, 1182 |
| PspPI | GGNCC | 3 cut(s) | 373, 610, 1105 |
| PspPPI | RGGWCCY | 2 cut(s) | 373, 610 |
| PsuI | RGATCY | 1 cut(s) | 1286 |
| PvuII | CAGCTG | 2 cut(s) | 251, 1250 |
| RsaI | GTAC | 2 cut(s) | 1081, 1321 |
| RsaNI | GTAC | 2 cut(s) | 1080, 1320 |
| SaqAI | TTAA | 9 cut(s) | 66, 117, 206, 527, 588, 774, 864, 1046, 1361 |
| SatI | GCNGC | 3 cut(s) | 447, 1092, 1251 |
| Sau3AI | GATC | 6 cut(s) | 145, 367, 681, 1159, 1286, 1324 |
| Sau96I | GGNCC | 3 cut(s) | 373, 610, 1105 |
| ScaI | AGTACT | 1 cut(s) | 1321 |
| SchI | GAGTC | 2 cut(s) | 530, 877 |
| ScrFI | CCNGG | 5 cut(s) | 29, 293, 536, 1053, 1193 |
| SfaNI | GCATC | 5 cut(s) | 343, 433, 458, 965, 1162 |
| SinI | GGWCC | 3 cut(s) | 373, 610, 1105 |
| SpeI | ACTAGT | 2 cut(s) | 583, 1316 |
| Sse9I | AATT | 2 cut(s) | 668, 790 |
| SseBI | AGGCCT | 1 cut(s) | 388 |
| SsiI | CCGC | 7 cut(s) | 179, 268, 446, 457, 1103, 1175, 1253 |
| SspMI | CTAG | 4 cut(s) | 584, 606, 1290, 1317 |
| StuI | AGGCCT | 1 cut(s) | 388 |
| StyD4I | CCNGG | 5 cut(s) | 27, 291, 534, 1051, 1191 |
| StyI | CCWWGG | 2 cut(s) | 389, 891 |
| TaaI | ACNGT | 4 cut(s) | 57, 215, 652, 829 |
| TaqI | TCGA | 4 cut(s) | 49, 976, 1170, 1302 |
| TasI | AATT | 2 cut(s) | 668, 790 |
| TatI | WGTACW | 1 cut(s) | 1319 |
| TauI | GCSGC | 1 cut(s) | 449 |
| TfiI | GAWTC | 1 cut(s) | 1142 |
| Tru1I | TTAA | 9 cut(s) | 66, 117, 206, 527, 588, 774, 864, 1046, 1361 |
| Tru9I | TTAA | 9 cut(s) | 66, 117, 206, 527, 588, 774, 864, 1046, 1361 |
| TscAI | CASTG | 3 cut(s) | 190, 218, 355 |
| TseFI | GTSAC | 1 cut(s) | 174 |
| TseI | GCWGC | 2 cut(s) | 1091, 1250 |
| Tsp45I | GTSAC | 1 cut(s) | 174 |
| TspDTI | ATGAA | 4 cut(s) | 144, 729, 749, 1155 |
| TspGWI | ACGGA | 2 cut(s) | 51, 113 |
| TspRI | CASTG | 3 cut(s) | 190, 218, 355 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 691 |
| VpaK11BI | GGWCC | 3 cut(s) | 373, 610, 1105 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 930 |
| XbaI | TCTAGA | 1 cut(s) | 1289 |
| XceI | RCATGY | 1 cut(s) | 601 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 218 |
| XspI | CTAG | 4 cut(s) | 584, 606, 1290, 1317 |
| ZrmI | AGTACT | 1 cut(s) | 1321 |