RLG00000001492

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000182
Physical Location & Seq
Reverse (-)
16352594 .. 16353425
832 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001492

Sequence Viewer

Length: 696 bp
ATGGTAGATAGAGAGGAGAGTGACAATGATATTCAACTTGAAGGCATGGAAGTGGACTCTGAGGTGAAAGCACTGACTTTAGAGAACATCATGGTGTACTTTCCTCAACCGACTACACAGGATATTGAGGAAGAAGCTAAAACCCACAATGCTGATCTTAACCCCTCCTCCTCGCGTTGGACCTATGAGAGATGCCGGAACAAGTCTTCCTCTAAGTTAGATTCCAAGGCTACTCTAGTGGAGAGTGCTAATCAAGCTAAAAAATTTACTGGTATGGTTAGAGACCTTGGCAACAAGGGTAAAGCAGTTCTAGGCAGTAAGCCCCAAGCCACGGTGAAGAAAGGTATCTCTTTCAAAGATCCCACAACTAAAAAAAGACTTTATAACTTTGATATAACTATGGAGTACCCATCTCCTAAGGAAGTTTACTCCCCCGGGGATGTGGTGGACTACTTTTTTGCTAATTATGACAACTTAAATAAGCAGTTTGAGAACTTTAGTGATGCTAAGGATATTGATATGGGTAAAAGTGAGGATCTGAATGCGTATGAGGTCAAAATGGTGCATGGAGAGAGGGCTCTTGTCCTCAGAACCGATAGTTCTGACATGAGCATTGGATCTAGGAAGCCAACAAGGGACATGGCTGAAGAGCAAAGCATGGCTGAGGCCAATGCAGAGGAGAGTGACACCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.06

Weight (kDa)

4.79

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 384
AccII CGCG 1 cut(s) 175
AclWI GGATC 3 cut(s) 353, 543, 625
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 666
AfaI GTAC 2 cut(s) 98, 407
AfiI CCNNNNNNNGG 2 cut(s) 177, 331
AgsI TTSAA 3 cut(s) 35, 41, 355
AloI GAACNNNNNNTCC 2 cut(s) 191, 223
AluBI AGCT 2 cut(s) 137, 257
AluI AGCT 2 cut(s) 137, 257
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 3 cut(s) 353, 543, 625
Ama87I CYCGRG 1 cut(s) 434
AoxI GGCC 1 cut(s) 666
ApoI RAATTY 1 cut(s) 263
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AspS9I GGNCC 1 cut(s) 180
AsuC2I CCSGG 2 cut(s) 435, 436
AsuHPI GGTGA 2 cut(s) 76, 346
AvaI CYCGRG 1 cut(s) 434
AvaII GGWCC 1 cut(s) 180
AxyI CCTNAGG 1 cut(s) 417
BanII GRGCYC 1 cut(s) 580
BbsI GAAGAC 1 cut(s) 198
BbvCI CCTCAGC 1 cut(s) 663
BccI CCATC 1 cut(s) 418
BcnI CCSGG 2 cut(s) 435, 436
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 3 cut(s) 236, 311, 621
Bme1390I CCNGG 2 cut(s) 435, 436
Bme18I GGWCC 1 cut(s) 180
BmeT110I CYCGRG 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 180
BmrFI CCNGG 2 cut(s) 435, 436
BmsI GCATC 2 cut(s) 182, 493
BpiI GAAGAC 1 cut(s) 198
Bpu10I CCTNAGC 2 cut(s) 507, 663
BpuMI CCSGG 2 cut(s) 435, 436
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 6 cut(s) 225, 286, 330, 433, 434, 435
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 331
Bse1I ACTGG 1 cut(s) 274
Bse21I CCTNAGG 1 cut(s) 417
BseDI CCNNGG 6 cut(s) 225, 286, 330, 433, 434, 435
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 2 cut(s) 177, 331
BseMII CTCAG 3 cut(s) 51, 601, 654
BseNI ACTGG 1 cut(s) 274
BseRI GAGGAG 4 cut(s) 29, 157, 160, 692
Bsh1236I CGCG 1 cut(s) 175
BshFI GGCC 1 cut(s) 668
BsiHKCI CYCGRG 1 cut(s) 434
BsiSI CCGG 2 cut(s) 196, 435
BslFI GGGAC 1 cut(s) 650
BslI CCNNNNNNNGG 2 cut(s) 177, 331
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 650
BsmI GAATGC 1 cut(s) 547
BsnI GGCC 1 cut(s) 668
Bso31I GGTCTC 1 cut(s) 276
BsoBI CYCGRG 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 4 cut(s) 154, 358, 535, 617
BspANI GGCC 1 cut(s) 668
BspCNI CTCAG 3 cut(s) 52, 600, 655
BspFNI CGCG 1 cut(s) 175
BspPI GGATC 3 cut(s) 353, 543, 625
BspQI GCTCTTC 1 cut(s) 642
BspTNI GGTCTC 1 cut(s) 276
BsrI ACTGG 1 cut(s) 274
BssECI CCNNGG 6 cut(s) 225, 286, 330, 433, 434, 435
BssMI GATC 4 cut(s) 154, 358, 535, 617
BssT1I CCWWGG 2 cut(s) 225, 286
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 642
BstDEI CTNAG 6 cut(s) 60, 213, 417, 507, 587, 663
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 445
BstFNI CGCG 1 cut(s) 175
BstKTI GATC 4 cut(s) 157, 361, 538, 620
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 4 cut(s) 154, 358, 535, 617
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstSCI CCNGG 2 cut(s) 433, 434
BstUI CGCG 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 3 cut(s) 358, 535, 617
BstYI RGATCY 3 cut(s) 358, 535, 617
Bsu36I CCTNAGG 1 cut(s) 417
BsuRI GGCC 1 cut(s) 668
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 1 cut(s) 445
BtsIMutI CAGTG 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 180
Cfr9I CCCGGG 1 cut(s) 434
Csp6I GTAC 2 cut(s) 97, 406
CviAII CATG 6 cut(s) 46, 91, 566, 607, 640, 658
CviQI GTAC 2 cut(s) 97, 406
DdeI CTNAG 6 cut(s) 60, 213, 417, 507, 587, 663
DpnI GATC 4 cut(s) 156, 360, 537, 619
DpnII GATC 4 cut(s) 154, 358, 535, 617
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Eco130I CCWWGG 2 cut(s) 225, 286
Eco24I GRGCYC 1 cut(s) 580
Eco31I GGTCTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 666
Eco81I CCTNAGG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 434
EcoT14I CCWWGG 2 cut(s) 225, 286
EcoT38I GRGCYC 1 cut(s) 580
ErhI CCWWGG 2 cut(s) 225, 286
FaeI CATG 6 cut(s) 49, 94, 569, 610, 643, 661
FaqI GGGAC 1 cut(s) 650
FatI CATG 6 cut(s) 45, 90, 565, 606, 639, 657
FokI GGATG 1 cut(s) 452
FriOI GRGCYC 1 cut(s) 580
FspBI CTAG 3 cut(s) 236, 311, 621
HaeIII GGCC 1 cut(s) 668
HapII CCGG 2 cut(s) 196, 435
Hin1II CATG 6 cut(s) 49, 94, 569, 610, 643, 661
HinfI GANTC 2 cut(s) 56, 221
HpaII CCGG 2 cut(s) 196, 435
HphI GGTGA 2 cut(s) 76, 346
Hpy166II GTNNAC 4 cut(s) 55, 97, 427, 448
Hpy188I TCNGA 4 cut(s) 61, 540, 590, 604
Hpy8I GTNNAC 4 cut(s) 55, 97, 427, 448
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 2 cut(s) 565, 674
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 6 cut(s) 60, 213, 417, 507, 587, 663
Hsp92II CATG 6 cut(s) 49, 94, 569, 610, 643, 661
Kzo9I GATC 4 cut(s) 154, 358, 535, 617
LguI GCTCTTC 1 cut(s) 642
LpnPI CCDG 4 cut(s) 104, 209, 255, 448
LweI GCATC 2 cut(s) 182, 493
MaeI CTAG 3 cut(s) 236, 311, 621
MaeIII GTNAC 2 cut(s) 20, 683
MalI GATC 4 cut(s) 156, 360, 537, 619
MboI GATC 4 cut(s) 154, 358, 535, 617
MboII GAAGA 4 cut(s) 143, 198, 349, 659
MflI RGATCY 3 cut(s) 358, 535, 617
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 2 cut(s) 263, 463
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 158
MseI TTAA 2 cut(s) 159, 476
MslI CAYNNNNRTG 2 cut(s) 50, 92
MspI CCGG 2 cut(s) 196, 435
MspR9I CCNGG 2 cut(s) 435, 436
Mva1269I GAATGC 1 cut(s) 547
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 254
NciI CCSGG 2 cut(s) 435, 436
NdeII GATC 4 cut(s) 154, 358, 535, 617
NlaIII CATG 6 cut(s) 49, 94, 569, 610, 643, 661
NmuCI GTSAC 2 cut(s) 20, 683
PciSI GCTCTTC 1 cut(s) 642
PctI GAATGC 1 cut(s) 547
PfeI GAWTC 1 cut(s) 221
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PsiI TTATAA 1 cut(s) 384
PspPI GGNCC 1 cut(s) 180
PsuI RGATCY 3 cut(s) 358, 535, 617
RsaI GTAC 2 cut(s) 98, 407
RsaNI GTAC 2 cut(s) 97, 406
RseI CAYNNNNRTG 2 cut(s) 50, 92
SapI GCTCTTC 1 cut(s) 642
SaqAI TTAA 2 cut(s) 159, 476
Sau3AI GATC 4 cut(s) 154, 358, 535, 617
Sau96I GGNCC 1 cut(s) 180
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 2 cut(s) 435, 436
SduI GDGCHC 1 cut(s) 580
SetI ASST 8 cut(s) 66, 139, 185, 259, 288, 346, 555, 692
SfaNI GCATC 2 cut(s) 182, 493
SinI GGWCC 1 cut(s) 180
SmaI CCCGGG 1 cut(s) 436
SmiMI CAYNNNNRTG 2 cut(s) 50, 92
Sse9I AATT 2 cut(s) 263, 463
SspMI CTAG 3 cut(s) 236, 311, 621
StyD4I CCNGG 2 cut(s) 433, 434
StyI CCWWGG 2 cut(s) 225, 286
TaaI ACNGT 1 cut(s) 334
TasI AATT 2 cut(s) 263, 463
TatI WGTACW 1 cut(s) 96
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 159, 476
Tru9I TTAA 2 cut(s) 159, 476
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 2 cut(s) 20, 683
Tsp45I GTSAC 2 cut(s) 20, 683
TspMI CCCGGG 1 cut(s) 434
TspRI CASTG 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 180
XapI RAATTY 1 cut(s) 263
XmaI CCCGGG 1 cut(s) 434
XspI CTAG 3 cut(s) 236, 311, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.