Rroxscaffold_4G00318780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000182
Physical Location & Seq
Reverse (-)
46130447 .. 46131638
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00318780.1

Sequence Viewer

Length: 339 bp
ATGAAGAAGAAGAAGAGAGGAGGAGAGAGGTTTAACAATACTGATCTGAACCCACCTTCACCAAGATGGACATATGTTAGGTGTAGGAATAGAGCTAGATCGAAAGGTACTCCTGCTGCAAGTGCCAACAAAGCTGAGAAAGTGATTGGAATAGGCTCTAATCTTCGGAAGAAGGGCAAGGCCATTGTTGGCAACCACAAAGGCTCGTTAATGAAGCAAGGCATCTCATTTAAGGATGTGGCAACAGGACAAGGTACCATCATCATCAGTGATAATGAAGATGACAATTCTGAGAAAGCAGGTTTCAAGGACTCATCTAGTGAAAAGTTCTCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.25

Weight (kDa)

10.36

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 290
Acc65I GGTACC 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 254
AfaI GTAC 2 cut(s) 109, 256
AgsI TTSAA 1 cut(s) 307
AluBI AGCT 2 cut(s) 95, 134
AluI AGCT 2 cut(s) 95, 134
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 1 cut(s) 116
Asp718I GGTACC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 51
BanI GGYRCC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 103
BccI CCATC 2 cut(s) 60, 266
BfaI CTAG 2 cut(s) 96, 318
BfuAI ACCTGC 1 cut(s) 290
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 256
BmsI GCATC 1 cut(s) 231
BseGI GGATG 1 cut(s) 241
BseMII CTCAG 2 cut(s) 126, 282
BseRI GAGGAG 2 cut(s) 33, 36
BseXI GCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 254
BsnI GGCC 1 cut(s) 182
Bsp143I GATC 2 cut(s) 43, 98
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 127, 283
BspLI GGNNCC 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 254
BssMI GATC 2 cut(s) 43, 98
Bst6I CTCTTC 1 cut(s) 8
BstDEI CTNAG 2 cut(s) 135, 291
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 2 cut(s) 46, 101
BstMBI GATC 2 cut(s) 43, 98
BstMWI GCNNNNNNNGC 2 cut(s) 122, 131
BstV1I GCAGC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 274
BveI ACCTGC 1 cut(s) 290
Csp6I GTAC 2 cut(s) 108, 255
CviJI RGCY 5 cut(s) 95, 134, 156, 182, 204
CviKI_1 RGCY 5 cut(s) 95, 134, 156, 182, 204
CviQI GTAC 2 cut(s) 108, 255
DdeI CTNAG 2 cut(s) 135, 291
DpnI GATC 2 cut(s) 45, 100
DpnII GATC 2 cut(s) 43, 98
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
FaiI YATR 2 cut(s) 73, 75
FauNDI CATATG 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 2 cut(s) 96, 318
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 1 cut(s) 182
HinfI GANTC 1 cut(s) 311
HphI GGTGA 1 cut(s) 51
Hpy188I TCNGA 3 cut(s) 48, 168, 292
Hpy188III TCNNGA 1 cut(s) 333
HpyAV CCTTC 2 cut(s) 66, 166
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 131
HpyF3I CTNAG 2 cut(s) 135, 291
KpnI GGTACC 1 cut(s) 258
Kzo9I GATC 2 cut(s) 43, 98
LpnPI CCDG 3 cut(s) 126, 231, 285
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 231
MaeI CTAG 2 cut(s) 96, 318
MalI GATC 2 cut(s) 45, 100
MboI GATC 2 cut(s) 43, 98
MboII GAAGA 7 cut(s) 16, 19, 22, 25, 155, 181, 290
MluCI AATT 1 cut(s) 286
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 3 cut(s) 11, 14, 21
MseI TTAA 3 cut(s) 33, 209, 231
MslI CAYNNNNRTG 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 122, 131
NdeI CATATG 1 cut(s) 73
NdeII GATC 2 cut(s) 43, 98
NlaIV GGNNCC 1 cut(s) 256
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 256
RsaI GTAC 2 cut(s) 109, 256
RsaNI GTAC 2 cut(s) 108, 255
RseI CAYNNNNRTG 1 cut(s) 64
SaqAI TTAA 3 cut(s) 33, 209, 231
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 2 cut(s) 43, 98
SchI GAGTC 1 cut(s) 305
SetI ASST 8 cut(s) 32, 58, 83, 97, 109, 136, 256, 304
SfaNI GCATC 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 64
Sse9I AATT 1 cut(s) 286
SspMI CTAG 2 cut(s) 96, 318
TaqI TCGA 2 cut(s) 101, 334
TasI AATT 1 cut(s) 286
Tru1I TTAA 3 cut(s) 33, 209, 231
Tru9I TTAA 3 cut(s) 33, 209, 231
TscAI CASTG 1 cut(s) 274
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 17, 227, 291
TspRI CASTG 1 cut(s) 274
XspI CTAG 2 cut(s) 96, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.