Rh3AG324400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000182
Physical Location & Seq
Forward (+)
45742194 .. 45745233
3040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG324400.1

Sequence Viewer

Length: 483 bp
ATGCTTACCTTTATGTATGCTTCAAGTATAGAGACTGCTATTTATAGGACCATCCTTAGATTATTTTCCCCAACCCGATCTAGTGATTTACCTTACTCAACCAGCCTAGTTCTCTACTTTCTGTTTTTCACTATGGCCTTCTCCCCAAACGCTCAAGCTCAGGCTCAGGCTACATCCTCCAGACGAACCTTCCCTTTCAAGCGCTTTGCTTTTTTCCCAAGAACCCCAGGAAATAATTCATTTCCTGTCAATATTGGAGATGAGACCATCCTAATGGATAATGCCCTTACCTATGTTGACCTGCCTTCCCTCGCCCCCCCCCCCCCCGGCGAAGGCTTTTTTGAACATTATAGCAATTTCTGCTTAGTTGGAATGGGAAGAAGCTCCCTGCTCAGGTGGTGCTTAACAAGTGTACTGATATGTGGGCCAATTCGGAGGGTAACTTCCAAATCAACAGGCTTATCAACCACTAGTTTGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.81

Weight (kDa)

9.45

Isoelectric Point (pI)

67.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 309
AfaI GTAC 1 cut(s) 414
AfeI AGCGCT 1 cut(s) 203
AfiI CCNNNNNNNGG 3 cut(s) 326, 332, 393
AgsI TTSAA 3 cut(s) 24, 199, 344
AhlI ACTAGT 1 cut(s) 470
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 2 cut(s) 158, 384
AluI AGCT 2 cut(s) 158, 384
Alw26I GTCTC 2 cut(s) 26, 257
Aor51HI AGCGCT 1 cut(s) 203
AoxI GGCC 2 cut(s) 135, 425
Asp700I GAANNNNTTC 1 cut(s) 235
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 2 cut(s) 48, 425
AsuC2I CCSGG 1 cut(s) 327
AvaII GGWCC 1 cut(s) 48
BccI CCATC 2 cut(s) 59, 275
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 26, 257
BcuI ACTAGT 1 cut(s) 470
BfaI CTAG 3 cut(s) 81, 107, 471
BfoI RGCGCY 1 cut(s) 205
BfuAI ACCTGC 1 cut(s) 309
Bme1390I CCNGG 2 cut(s) 228, 327
Bme18I GGWCC 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 48, 425
BmrFI CCNGG 2 cut(s) 228, 327
BpmI CTGGAG 1 cut(s) 163
Bpu10I CCTNAGC 3 cut(s) 159, 165, 392
BpuEI CTTGAG 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 226, 325
Bsc4I CCNNNNNNNGG 3 cut(s) 326, 332, 393
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 226, 325
BseGI GGATG 3 cut(s) 51, 173, 267
BseLI CCNNNNNNNGG 3 cut(s) 326, 332, 393
BseMII CTCAG 3 cut(s) 173, 179, 406
BshFI GGCC 2 cut(s) 137, 427
BsiSI CCGG 1 cut(s) 327
BslI CCNNNNNNNGG 3 cut(s) 326, 332, 393
BsmAI GTCTC 2 cut(s) 26, 257
BsnI GGCC 2 cut(s) 137, 427
Bso31I GGTCTC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 77
BspANI GGCC 2 cut(s) 137, 427
BspCNI CTCAG 3 cut(s) 172, 178, 405
BspMI ACCTGC 1 cut(s) 309
BspTNI GGTCTC 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 226, 325
BssMI GATC 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 228
BstAPI GCANNNNNTGC 1 cut(s) 360
BstDEI CTNAG 5 cut(s) 56, 159, 165, 364, 392
BstF5I GGATG 3 cut(s) 51, 173, 267
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 2 cut(s) 26, 257
BstMBI GATC 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 2 cut(s) 226, 325
BstXI CCANNNNNNTGG 1 cut(s) 274
BsuRI GGCC 2 cut(s) 137, 427
BtsCI GGATG 3 cut(s) 51, 173, 267
BveI ACCTGC 1 cut(s) 309
CfoI GCGC 1 cut(s) 204
Cfr13I GGNCC 2 cut(s) 48, 425
Csp6I GTAC 1 cut(s) 413
CviJI RGCY 9 cut(s) 105, 137, 158, 164, 170, 336, 384, 427, 459
CviKI_1 RGCY 9 cut(s) 105, 137, 158, 164, 170, 336, 384, 427, 459
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 5 cut(s) 56, 159, 165, 364, 392
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 48
Eco47III AGCGCT 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 226
FaiI YATR 9 cut(s) 14, 18, 29, 45, 134, 294, 351, 421, 481
FokI GGATG 3 cut(s) 38, 160, 254
FspBI CTAG 3 cut(s) 81, 107, 471
GlaI GCGC 1 cut(s) 203
GsuI CTGGAG 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 2 cut(s) 137, 427
HapII CCGG 1 cut(s) 327
HhaI GCGC 1 cut(s) 204
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HpaII CCGG 1 cut(s) 327
Hpy166II GTNNAC 2 cut(s) 298, 413
Hpy188I TCNGA 1 cut(s) 435
Hpy188III TCNNGA 1 cut(s) 180
Hpy8I GTNNAC 2 cut(s) 298, 413
HpyAV CCTTC 4 cut(s) 148, 199, 315, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpyF3I CTNAG 5 cut(s) 56, 159, 165, 364, 392
HspAI GCGC 1 cut(s) 202
Kzo9I GATC 1 cut(s) 77
LmnI GCTCC 1 cut(s) 389
MaeI CTAG 3 cut(s) 81, 107, 471
MaeIII GTNAC 1 cut(s) 439
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 1 cut(s) 390
MluCI AATT 3 cut(s) 235, 355, 429
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 3 cut(s) 187, 320, 429
MroXI GAANNNNTTC 1 cut(s) 235
MseI TTAA 1 cut(s) 404
MslI CAYNNNNRTG 1 cut(s) 272
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 2 cut(s) 228, 327
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 360
NciI CCSGG 1 cut(s) 327
NdeII GATC 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspPI GGNCC 2 cut(s) 48, 425
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 1 cut(s) 404
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 2 cut(s) 48, 425
ScrFI CCNGG 2 cut(s) 228, 327
SetI ASST 8 cut(s) 11, 94, 160, 191, 293, 303, 386, 398
SinI GGWCC 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
SpeI ACTAGT 1 cut(s) 470
Sse9I AATT 3 cut(s) 235, 355, 429
SspI AATATT 1 cut(s) 253
SspMI CTAG 3 cut(s) 81, 107, 471
StyD4I CCNGG 2 cut(s) 226, 325
TasI AATT 3 cut(s) 235, 355, 429
TatI WGTACW 1 cut(s) 412
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TspDTI ATGAA 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 3 cut(s) 81, 107, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.