Rmu_sc0000693.1_g000080

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000693.1
OG0000182
Physical Location & Seq
Forward (+)
396135 .. 397545
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000693.1_g000080.1.cds

Sequence Viewer

Length: 1212 bp
atgtgggctgccctccaaggaacagtcaagcttatccaaatgactaatgggtggtactatctggaattcacctaccagcaggacaatgactttgtcctggaaaataggtcacagtttgttaagggcaggatctttcacattaggcgttggtccccttctttcaacccgagaactgctgagatcgaaactcttatcctctggattaggctccccaatctccctttacattactggagccaacaagccattcaaccgattgtgcaagttgttggccgttttgtcaaactggatggacgcacggagaacagcgaaaactatgtctttgctagagtgtgcatggaaatcgacttgcgcactccactgaagagcattctggtgatccatgaagaagaagagggtgatctgccctttgatttagataaacacttcgttatggtcgacaaggaggagggggatgatgatattgtccctgctgatatggatgttgaaccagaggtcaagcagctggcaacatcgaaagttatgatccagttccctcagcctattaaggaggaggaacttgaggagactgatcacaacaaccccaatgtcaacccaccatcacctggatggaaattggttcgtggcaagaaccagaactactctttaactaagggagcttatacaagtgctaatcttcaaaagaaagggaagggactcggaaccgtcatcatcgatgatgatgataacttcaacaggacccctagtccccacacccctagtccccacaagttctcatcctctagtgaggagcaagtggtgagcttatctagttctgaaacttctcttttatctttttcttcgtctcctgaaataacaaaactctataattatgatctggatgatatatattctccatcccatgctttggactattattatgctaattatagatcctcaaacgtgccgtttgagaattttagtgatgctagagcctctggttttgttggggaggatcaaaacatgaatgaatatgaggttaggatgattaatgggagaagggctctggtttttgctacagaggactcgggcagagaatatgggtcaaagaaacgaactagggacatggctgatgatcagagtatggcggaggctgctggtaatggggaggacagcgacacaacgcctcttctcacaaggcccataaaccatgaagatcctttgctggaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

403

Amino Acids

46.05

Weight (kDa)

4.77

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 353
AccB7I CCANNNNNTGG 2 cut(s) 605, 907
AccI GTMKAC 1 cut(s) 438
AciI CCGC 1 cut(s) 1127
AclWI GGATC 6 cut(s) 137, 373, 520, 927, 1002, 1190
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 2 cut(s) 65, 955
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 2 cut(s) 605, 907
AgsI TTSAA 5 cut(s) 163, 251, 488, 680, 733
AhdI GACNNNNNGTC 1 cut(s) 744
AjnI CCWGG 2 cut(s) 96, 604
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 4 cut(s) 31, 505, 659, 804
AluI AGCT 4 cut(s) 31, 505, 659, 804
Alw26I GTCTC 2 cut(s) 560, 849
AlwI GGATC 6 cut(s) 137, 373, 520, 927, 1002, 1190
Ama87I CYCGRG 2 cut(s) 166, 1066
AoxI GGCC 2 cut(s) 271, 1178
ApeKI GCWGC 3 cut(s) 8, 502, 1133
ApoI RAATTY 2 cut(s) 65, 955
ArsI GACNNNNNNTTYG 4 cut(s) 74, 106, 303, 335
AseI ATTAAT 1 cut(s) 1029
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 3 cut(s) 150, 738, 1179
AsuHPI GGTGA 5 cut(s) 61, 388, 410, 594, 811
AvaI CYCGRG 2 cut(s) 166, 1066
AvaII GGWCC 2 cut(s) 150, 738
BanII GRGCYC 1 cut(s) 1045
BbvCI CCTCAGC 1 cut(s) 537
BbvI GCAGC 2 cut(s) 514, 1120
BccI CCATC 4 cut(s) 284, 603, 607, 904
BceAI ACGGC 2 cut(s) 258, 931
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 2 cut(s) 98, 606
BclI TGATCA 2 cut(s) 571, 1114
BcoDI GTCTC 2 cut(s) 560, 849
BfaI CTAG 7 cut(s) 327, 744, 759, 783, 810, 969, 1098
BfmI CTRYAG 1 cut(s) 1056
BisI GCNGC 3 cut(s) 9, 503, 1134
BlsI GCNGC 3 cut(s) 10, 504, 1135
Bme1390I CCNGG 2 cut(s) 98, 606
Bme18I GGWCC 2 cut(s) 150, 738
BmeRI GACNNNNNGTC 1 cut(s) 744
BmeT110I CYCGRG 2 cut(s) 166, 1066
BmgT120I GGNCC 3 cut(s) 150, 738, 1179
BmiI GGNNCC 5 cut(s) 152, 209, 236, 703, 740
BmrFI CCNGG 2 cut(s) 98, 606
BmsI GCATC 1 cut(s) 955
BplI GAGNNNNNCTC 2 cut(s) 1027, 1059
BpmI CTGGAG 1 cut(s) 253
Bpu10I CCTNAGC 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 581
Bsa29I ATCGAT 1 cut(s) 714
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 2 cut(s) 605, 907
Bse1I ACTGG 3 cut(s) 236, 291, 529
BseBI CCWGG 2 cut(s) 98, 606
BseCI ATCGAT 1 cut(s) 714
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 8 cut(s) 295, 460, 487, 614, 776, 886, 896, 1029
BseLI CCNNNNNNNGG 2 cut(s) 605, 907
BseMII CTCAG 2 cut(s) 168, 551
BseNI ACTGG 3 cut(s) 236, 291, 529
BseRI GAGGAG 4 cut(s) 461, 566, 578, 803
BseXI GCAGC 2 cut(s) 514, 1120
BshFI GGCC 2 cut(s) 273, 1180
BshVI ATCGAT 1 cut(s) 714
BsiHKCI CYCGRG 2 cut(s) 166, 1066
BslFI GGGAC 6 cut(s) 136, 452, 708, 732, 747, 1115
BslI CCNNNNNNNGG 2 cut(s) 605, 907
BsmAI GTCTC 2 cut(s) 560, 849
BsmBI CGTCTC 1 cut(s) 849
BsmFI GGGAC 6 cut(s) 136, 452, 708, 732, 747, 1115
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 2 cut(s) 273, 1180
BsoBI CYCGRG 2 cut(s) 166, 1066
Bsp1286I GDGCHC 1 cut(s) 1045
BspACI CCGC 1 cut(s) 1127
BspANI GGCC 2 cut(s) 273, 1180
BspCNI CTCAG 2 cut(s) 169, 550
BspDI ATCGAT 1 cut(s) 714
BspLI GGNNCC 5 cut(s) 152, 209, 236, 703, 740
BspPI GGATC 6 cut(s) 137, 373, 520, 927, 1002, 1190
BspQI GCTCTTC 1 cut(s) 359
BsrI ACTGG 3 cut(s) 236, 291, 529
BssECI CCNNGG 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 16
Bst2UI CCWGG 2 cut(s) 98, 606
Bst4CI ACNGT 3 cut(s) 25, 114, 706
Bst6I CTCTTC 3 cut(s) 359, 387, 1173
BstC8I GCNNGC 1 cut(s) 507
BstDEI CTNAG 3 cut(s) 177, 537, 651
BstF5I GGATG 8 cut(s) 295, 460, 487, 614, 776, 886, 896, 1029
BstHHI GCGC 1 cut(s) 354
BstMAI GTCTC 2 cut(s) 560, 849
BstMWI GCNNNNNNNGC 1 cut(s) 1133
BstNI CCWGG 2 cut(s) 98, 606
BstSCI CCNGG 2 cut(s) 96, 604
BstSFI CTRYAG 1 cut(s) 1056
BstV1I GCAGC 2 cut(s) 514, 1120
BstX2I RGATCY 3 cut(s) 129, 932, 1195
BstYI RGATCY 3 cut(s) 129, 932, 1195
Bsu15I ATCGAT 1 cut(s) 714
BsuRI GGCC 2 cut(s) 273, 1180
BsuTUI ATCGAT 1 cut(s) 714
BtsCI GGATG 8 cut(s) 295, 460, 487, 614, 776, 886, 896, 1029
BtsIMutI CAGTG 1 cut(s) 359
Cac8I GCNNGC 1 cut(s) 507
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 3 cut(s) 150, 738, 1179
ClaI ATCGAT 1 cut(s) 714
CseI GACGC 1 cut(s) 303
Csp6I GTAC 1 cut(s) 55
CviAII CATG 6 cut(s) 337, 383, 902, 1003, 1105, 1190
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 3 cut(s) 177, 537, 651
DriI GACNNNNNGTC 1 cut(s) 744
EaeI YGGCCR 1 cut(s) 271
Eam1104I CTCTTC 3 cut(s) 359, 387, 1173
Eam1105I GACNNNNNGTC 1 cut(s) 744
EarI CTCTTC 3 cut(s) 359, 387, 1173
EciI GGCGGA 1 cut(s) 1142
Eco130I CCWWGG 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 1045
Eco47I GGWCC 2 cut(s) 150, 738
Eco57I CTGAAG 1 cut(s) 383
Eco88I CYCGRG 2 cut(s) 166, 1066
EcoO109I RGGNCCY 1 cut(s) 738
EcoRI GAATTC 1 cut(s) 65
EcoRII CCWGG 2 cut(s) 96, 604
EcoT14I CCWWGG 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 1045
ErhI CCWWGG 1 cut(s) 16
Esp3I CGTCTC 1 cut(s) 849
FaeI CATG 6 cut(s) 340, 386, 905, 1006, 1108, 1193
FaqI GGGAC 6 cut(s) 136, 452, 708, 732, 747, 1115
FatI CATG 6 cut(s) 336, 382, 901, 1002, 1104, 1189
FbaI TGATCA 2 cut(s) 571, 1114
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 3 cut(s) 9, 503, 1134
FokI GGATG 8 cut(s) 302, 467, 494, 621, 763, 883, 893, 1036
FriOI GRGCYC 1 cut(s) 1045
Fsp4HI GCNGC 3 cut(s) 9, 503, 1134
FspBI CTAG 7 cut(s) 327, 744, 759, 783, 810, 969, 1098
FspI TGCGCA 1 cut(s) 353
GlaI GCGC 1 cut(s) 353
GluI GCNGC 3 cut(s) 9, 503, 1134
GsuI CTGGAG 1 cut(s) 253
HaeIII GGCC 2 cut(s) 273, 1180
HgaI GACGC 1 cut(s) 303
HhaI GCGC 1 cut(s) 354
Hin1II CATG 6 cut(s) 340, 386, 905, 1006, 1108, 1193
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HincII GTYRAC 2 cut(s) 439, 592
HindII GTYRAC 2 cut(s) 439, 592
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 2 cut(s) 696, 1064
HphI GGTGA 5 cut(s) 61, 388, 410, 594, 811
Hpy166II GTNNAC 2 cut(s) 439, 592
Hpy188I TCNGA 3 cut(s) 701, 817, 1119
Hpy188III TCNNGA 4 cut(s) 62, 199, 848, 878
Hpy8I GTNNAC 2 cut(s) 439, 592
HpyAV CCTTC 3 cut(s) 165, 685, 1032
HpyCH4III ACNGT 3 cut(s) 25, 114, 706
HpyCH4IV ACGT 1 cut(s) 942
HpyCH4V TGCA 2 cut(s) 262, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 1133
HpyF3I CTNAG 3 cut(s) 177, 537, 651
HpySE526I ACGT 1 cut(s) 942
Hsp92II CATG 6 cut(s) 340, 386, 905, 1006, 1108, 1193
HspAI GCGC 1 cut(s) 352
Ksp22I TGATCA 2 cut(s) 571, 1114
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 4 cut(s) 213, 234, 656, 790
Lsp1109I GCAGC 2 cut(s) 514, 1120
LweI GCATC 1 cut(s) 955
MaeI CTAG 7 cut(s) 327, 744, 759, 783, 810, 969, 1098
MaeII ACGT 1 cut(s) 942
MaeIII GTNAC 1 cut(s) 108
MboII GAAGA 8 cut(s) 376, 398, 401, 404, 668, 831, 1160, 1205
MflI RGATCY 3 cut(s) 129, 932, 1195
MhlI GDGCHC 1 cut(s) 1045
MluCI AATT 5 cut(s) 65, 614, 868, 925, 955
MlyI GAGTC 2 cut(s) 690, 1058
MseI TTAA 4 cut(s) 120, 546, 647, 1029
MslI CAYNNNNRTG 2 cut(s) 374, 607
MspA1I CMGCKG 1 cut(s) 505
MspR9I CCNGG 2 cut(s) 98, 606
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 2 cut(s) 98, 606
MwoI GCNNNNNNNGC 1 cut(s) 1133
NlaIII CATG 6 cut(s) 340, 386, 905, 1006, 1108, 1193
NlaIV GGNNCC 5 cut(s) 152, 209, 236, 703, 740
NmuCI GTSAC 1 cut(s) 108
NsbI TGCGCA 1 cut(s) 353
PciSI GCTCTTC 1 cut(s) 359
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PctI GAATGC 1 cut(s) 369
PflFI GACNNNGTC 1 cut(s) 92
PflMI CCANNNNNTGG 2 cut(s) 605, 907
PfoI TCCNGGA 1 cut(s) 96
PkrI GCNGC 3 cut(s) 10, 504, 1135
PleI GAGTC 2 cut(s) 690, 1058
PpsI GAGTC 2 cut(s) 690, 1058
PpuMI RGGWCCY 1 cut(s) 738
PshBI ATTAAT 1 cut(s) 1029
Psp5II RGGWCCY 1 cut(s) 738
Psp6I CCWGG 2 cut(s) 96, 604
PspGI CCWGG 2 cut(s) 96, 604
PspN4I GGNNCC 5 cut(s) 152, 209, 236, 703, 740
PspPI GGNCC 3 cut(s) 150, 738, 1179
PspPPI RGGWCCY 1 cut(s) 738
PsrI GAACNNNNNNTAC 2 cut(s) 623, 655
PsuI RGATCY 3 cut(s) 129, 932, 1195
PsyI GACNNNGTC 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 505
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 2 cut(s) 374, 607
SalI GTCGAC 1 cut(s) 437
SapI GCTCTTC 1 cut(s) 359
SaqAI TTAA 4 cut(s) 120, 546, 647, 1029
SatI GCNGC 3 cut(s) 9, 503, 1134
Sau96I GGNCC 3 cut(s) 150, 738, 1179
SchI GAGTC 2 cut(s) 690, 1058
ScrFI CCNGG 2 cut(s) 98, 606
SduI GDGCHC 1 cut(s) 1045
SfaNI GCATC 1 cut(s) 955
SfcI CTRYAG 1 cut(s) 1056
SinI GGWCC 2 cut(s) 150, 738
SmiMI CAYNNNNRTG 2 cut(s) 374, 607
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 5 cut(s) 65, 614, 868, 925, 955
SsiI CCGC 1 cut(s) 1127
SspMI CTAG 7 cut(s) 327, 744, 759, 783, 810, 969, 1098
StyD4I CCNGG 2 cut(s) 96, 604
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 3 cut(s) 25, 114, 706
TaiI ACGT 1 cut(s) 945
TaqI TCGA 5 cut(s) 183, 345, 438, 515, 714
TasI AATT 5 cut(s) 65, 614, 868, 925, 955
Tru1I TTAA 4 cut(s) 120, 546, 647, 1029
Tru9I TTAA 4 cut(s) 120, 546, 647, 1029
TscAI CASTG 1 cut(s) 366
TseFI GTSAC 1 cut(s) 108
TseI GCWGC 3 cut(s) 8, 502, 1133
Tsp45I GTSAC 1 cut(s) 108
TspDTI ATGAA 4 cut(s) 399, 1019, 1023, 1206
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 1 cut(s) 366
Tth111I GACNNNGTC 1 cut(s) 92
Van91I CCANNNNNTGG 2 cut(s) 605, 907
VpaK11BI GGWCC 2 cut(s) 150, 738
VspI ATTAAT 1 cut(s) 1029
XapI RAATTY 2 cut(s) 65, 955
XcmI CCANNNNNNNNNTGG 2 cut(s) 44, 606
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 7 cut(s) 327, 744, 759, 783, 810, 969, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.