Rh4CG238700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000182
Physical Location & Seq
Reverse (-)
48351509 .. 48352048
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG238700.1

Sequence Viewer

Length: 540 bp
ATGAAGAAGGATTCCTTGGTAAAACTAGGAATCTCTTTCAAAGATGTTGTGCAAGGTCATGGAGTCATTACCATTAGTGACAATAAAGAGGAAAAGGCTGACAAACAGTCCAAGTACTCATCTTCAAGCGATAAGGAAGTGGTGAGATCTACTGCCACAAATAATCATTCTTTACTGTCTTATTCTAACATTTCTGAAATTGCTAAACTCTATGACAACCATAACCTTACTCTAGTGGAGCTCTATTCTCCCACATATGTTATTGATTTTTTCTATGCTAACTTTAGTCAACCTGACATGCAGTTTGAGAACTTTAGTGATGCTAGAGGGTCTGAATTTGTTAGCAAGGAGGAGGACATGAATGAAGATGATATCAAGATGGTAGGTGGAAAAAGGGGTCTGTTTCTTAGGGCTAACAGCTCAGACATGAGCACTGGATCAAGAAAACGTACTCGGGATATGGCTGAGGACCATAGCATGGCAGATGTTGAGGAAGCGGAGGGGCCTCTTCTCCTAAACTCCAGAAACCATGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.19

Weight (kDa)

5.05

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 478
AciI CCGC 1 cut(s) 497
AclWI GGATC 1 cut(s) 445
AcsI RAATTY 1 cut(s) 335
AfaI GTAC 2 cut(s) 116, 451
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 2 cut(s) 40, 126
AhdI GACNNNNNGTC 1 cut(s) 106
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AluBI AGCT 2 cut(s) 241, 420
AluI AGCT 2 cut(s) 241, 420
Alw21I GWGCWC 2 cut(s) 243, 434
AlwI GGATC 1 cut(s) 445
Ama87I CYCGRG 1 cut(s) 453
AoxI GGCC 1 cut(s) 503
ApoI RAATTY 1 cut(s) 335
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspS9I GGNCC 2 cut(s) 469, 503
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 453
AvaII GGWCC 1 cut(s) 469
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 2 cut(s) 243, 434
BbvCI CCTCAGC 1 cut(s) 465
BccI CCATC 1 cut(s) 373
BfaI CTAG 3 cut(s) 26, 233, 324
BglII AGATCT 1 cut(s) 146
BmcAI AGTACT 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 469
BmeRI GACNNNNNGTC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 453
BmgT120I GGNCC 2 cut(s) 469, 503
BmiI GGNNCC 1 cut(s) 504
BmsI GCATC 1 cut(s) 310
BpmI CTGGAG 1 cut(s) 505
Bpu10I CCTNAGC 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMII CTCAG 2 cut(s) 435, 456
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 1 cut(s) 365
BshFI GGCC 1 cut(s) 505
BsiHKAI GWGCWC 2 cut(s) 243, 434
BsiHKCI CYCGRG 1 cut(s) 453
BslI CCNNNNNNNGG 1 cut(s) 478
BsnI GGCC 1 cut(s) 505
BsoBI CYCGRG 1 cut(s) 453
Bsp1286I GDGCHC 2 cut(s) 243, 434
Bsp143I GATC 2 cut(s) 146, 437
BspACI CCGC 1 cut(s) 497
BspANI GGCC 1 cut(s) 505
BspCNI CTCAG 2 cut(s) 434, 457
BspLI GGNNCC 1 cut(s) 504
BspPI GGATC 1 cut(s) 445
BsrI ACTGG 1 cut(s) 439
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 2 cut(s) 146, 437
BssT1I CCWWGG 1 cut(s) 15
Bst4CI ACNGT 2 cut(s) 108, 177
Bst6I CTCTTC 1 cut(s) 513
BstDEI CTNAG 3 cut(s) 407, 421, 465
BstKTI GATC 2 cut(s) 149, 440
BstMBI GATC 2 cut(s) 146, 437
BstNSI RCATGY 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 146
BstYI RGATCY 1 cut(s) 146
BsuRI GGCC 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 432
Cfr13I GGNCC 2 cut(s) 469, 503
Csp6I GTAC 2 cut(s) 115, 450
CviAII CATG 6 cut(s) 59, 298, 358, 427, 478, 530
CviJI RGCY 6 cut(s) 98, 241, 413, 420, 464, 505
CviKI_1 RGCY 6 cut(s) 98, 241, 413, 420, 464, 505
CviQI GTAC 2 cut(s) 115, 450
DdeI CTNAG 3 cut(s) 407, 421, 465
DpnI GATC 2 cut(s) 148, 439
DpnII GATC 2 cut(s) 146, 437
DriI GACNNNNNGTC 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 513
Eam1105I GACNNNNNGTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 513
Ecl136II GAGCTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 469
Eco53kI GAGCTC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 503
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 6 cut(s) 62, 301, 361, 430, 481, 533
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 6 cut(s) 58, 297, 357, 426, 477, 529
FauNDI CATATG 1 cut(s) 256
FriOI GRGCYC 1 cut(s) 243
FspBI CTAG 3 cut(s) 26, 233, 324
GsuI CTGGAG 1 cut(s) 505
HaeIII GGCC 1 cut(s) 505
Hin1II CATG 6 cut(s) 62, 301, 361, 430, 481, 533
HincII GTYRAC 1 cut(s) 290
HindII GTYRAC 1 cut(s) 290
HinfI GANTC 3 cut(s) 11, 30, 63
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 3 cut(s) 196, 334, 424
Hpy188III TCNNGA 4 cut(s) 376, 441, 455, 522
Hpy8I GTNNAC 1 cut(s) 290
HpyCH4III ACNGT 2 cut(s) 108, 177
HpyCH4IV ACGT 1 cut(s) 448
HpyCH4V TGCA 2 cut(s) 52, 301
HpyF3I CTNAG 3 cut(s) 407, 421, 465
HpySE526I ACGT 1 cut(s) 448
Hsp92II CATG 6 cut(s) 62, 301, 361, 430, 481, 533
Kzo9I GATC 2 cut(s) 146, 437
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 3 cut(s) 306, 420, 535
LweI GCATC 1 cut(s) 310
MaeI CTAG 3 cut(s) 26, 233, 324
MaeII ACGT 1 cut(s) 448
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 148, 439
MboI GATC 2 cut(s) 146, 437
MboII GAAGA 4 cut(s) 16, 114, 377, 500
MflI RGATCY 1 cut(s) 146
MhlI GDGCHC 2 cut(s) 243, 434
MluCI AATT 2 cut(s) 198, 335
MlyI GAGTC 1 cut(s) 72
MnlI CCTC 8 cut(s) 82, 320, 343, 346, 460, 484, 493, 516
NdeI CATATG 1 cut(s) 256
NdeII GATC 2 cut(s) 146, 437
NlaIII CATG 6 cut(s) 62, 301, 361, 430, 481, 533
NlaIV GGNNCC 1 cut(s) 504
NmuCI GTSAC 1 cut(s) 77
NspI RCATGY 1 cut(s) 301
PfeI GAWTC 2 cut(s) 11, 30
PflMI CCANNNNNTGG 1 cut(s) 478
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 2 cut(s) 469, 503
PsuI RGATCY 1 cut(s) 146
RsaI GTAC 2 cut(s) 116, 451
RsaNI GTAC 2 cut(s) 115, 450
SacI GAGCTC 1 cut(s) 243
Sau3AI GATC 2 cut(s) 146, 437
Sau96I GGNCC 2 cut(s) 469, 503
ScaI AGTACT 1 cut(s) 116
SchI GAGTC 1 cut(s) 72
SduI GDGCHC 2 cut(s) 243, 434
SetI ASST 7 cut(s) 58, 228, 243, 295, 388, 422, 451
SfaNI GCATC 1 cut(s) 310
SinI GGWCC 1 cut(s) 469
Sse9I AATT 2 cut(s) 198, 335
SsiI CCGC 1 cut(s) 497
SspMI CTAG 3 cut(s) 26, 233, 324
SstI GAGCTC 1 cut(s) 243
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 2 cut(s) 108, 177
TaiI ACGT 1 cut(s) 451
TasI AATT 2 cut(s) 198, 335
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 2 cut(s) 11, 30
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 3 cut(s) 17, 374, 378
TspRI CASTG 1 cut(s) 439
Van91I CCANNNNNTGG 1 cut(s) 478
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 1 cut(s) 335
XceI RCATGY 1 cut(s) 301
XspI CTAG 3 cut(s) 26, 233, 324
ZrmI AGTACT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.