Rh1AG012200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000182
Physical Location & Seq
Reverse (-)
2062230 .. 2063036
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG012200.1

Sequence Viewer

Length: 807 bp
ATGAAGCTAGCCTCCGACAAGGTGATGCTGTATTTCCCACAACCTGCCAAGATTGATGCTGAAATGGATGCAAATCTTGTTAACAACGACAACATGAATCCTCCGTCTCCTGGTTGGACTCATGTTAGGAGGAAAGGTCACACCACCCCAAAAGCTGCTGCGACTGAGAACAGTGGCAATGAGAAAGTGAAGGAAATAAAGAGGGTCTATGCTAGGAAAGGCAAGAATGTGCTGGAATCGAAGAGGGCTCTGGTTAAACCAGGAATAATTTTTAGGGATGTTGCTAAAGGAAAGGGAGCTATTGTGATCACGGACAAGGACACTGAAAGCTTTTTTAACCAACAAGTGAACAAGAACACTAGGAAGAGTACCAAGAGTACATCCTCAAGTGAGGAGGTGGTGAGCTCTTCTGATACCATTAGTTCTGTTTTGTCTTACTCATCTTATCCTGATATTGCTAAACTTTATAATACACCAACTAACATTAAGCCAATGGCCGAGGAACCCTACTCGCCCAAGGATGTAGTAGCTTATTTTAAGGCTAACTTTAACTCACCAAATGTGCAGTTTGAGAATTTCAATGCTGTTAGGGCCTCTGGGTTTGAAGAGGGAGATGATAGCATGAATGAGTTTGAGGTGAAAATGATAAATGGAAGGACGGCTATGGTTTTTAAGACTGACAACCCTGGAATGAGCTCAGGCTCAAGGAAGAGAACTAGAGACATGAAGGATGACCAGAACATGGCTGCTGCTGATGCTGAAAATGAGGAGGACAACGCCTCTTCTCTGAAGATCCAGAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

29.73

Weight (kDa)

8.97

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
Acc36I ACCTGC 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 742
AclWI GGATC 1 cut(s) 787
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 1 cut(s) 574
AfaI GTAC 2 cut(s) 370, 379
AfiI CCNNNNNNNGG 2 cut(s) 110, 742
AgsI TTSAA 2 cut(s) 580, 605
AjnI CCWGG 3 cut(s) 109, 259, 685
AluBI AGCT 7 cut(s) 7, 155, 299, 330, 405, 530, 696
AluI AGCT 7 cut(s) 7, 155, 299, 330, 405, 530, 696
Alw21I GWGCWC 2 cut(s) 407, 698
Alw26I GTCTC 2 cut(s) 111, 714
AlwI GGATC 1 cut(s) 787
AoxI GGCC 2 cut(s) 495, 591
ApeKI GCWGC 4 cut(s) 155, 158, 746, 749
ApoI RAATTY 1 cut(s) 574
AspS9I GGNCC 1 cut(s) 591
AsuHPI GGTGA 4 cut(s) 34, 412, 546, 649
AsuNHI GCTAGC 1 cut(s) 7
BanII GRGCYC 3 cut(s) 250, 407, 698
Bbv12I GWGCWC 2 cut(s) 407, 698
BbvI GCAGC 4 cut(s) 142, 145, 733, 736
BceAI ACGGC 1 cut(s) 675
BciT130I CCWGG 3 cut(s) 111, 261, 687
BclI TGATCA 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 111, 714
BfaI CTAG 4 cut(s) 8, 213, 360, 717
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 4 cut(s) 156, 159, 747, 750
BlsI GCNGC 4 cut(s) 157, 160, 748, 751
Bme1390I CCNGG 3 cut(s) 111, 261, 687
BmgT120I GGNCC 1 cut(s) 591
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 3 cut(s) 111, 261, 687
BmsI GCATC 4 cut(s) 15, 46, 58, 745
BmtI GCTAGC 1 cut(s) 11
Bpu10I CCTNAGC 1 cut(s) 697
BpuEI CTTGAG 2 cut(s) 370, 688
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 498, 516, 685
BsaXI ACNNNNNCTCC 4 cut(s) 121, 151, 288, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 742
Bse3DI GCAATG 1 cut(s) 184
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 3 cut(s) 111, 261, 687
BseDI CCNNGG 3 cut(s) 498, 516, 685
BseGI GGATG 5 cut(s) 73, 283, 380, 526, 736
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 110, 742
BseMI GCAATG 1 cut(s) 184
BseMII CTCAG 2 cut(s) 156, 711
BseRI GAGGAG 2 cut(s) 407, 782
BseXI GCAGC 4 cut(s) 142, 145, 733, 736
BsgI GTGCAG 1 cut(s) 584
BshFI GGCC 2 cut(s) 497, 593
BsiHKAI GWGCWC 2 cut(s) 407, 698
BslI CCNNNNNNNGG 2 cut(s) 110, 742
BsmAI GTCTC 2 cut(s) 111, 714
BsmBI CGTCTC 1 cut(s) 111
BsnI GGCC 2 cut(s) 497, 593
Bsp1286I GDGCHC 3 cut(s) 250, 407, 698
Bsp143I GATC 2 cut(s) 306, 792
BspANI GGCC 2 cut(s) 497, 593
BspCNI CTCAG 2 cut(s) 157, 710
BspLI GGNNCC 1 cut(s) 504
BspMI ACCTGC 1 cut(s) 52
BspOI GCTAGC 1 cut(s) 11
BspPI GGATC 1 cut(s) 787
BspQI GCTCTTC 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 184
BssECI CCNNGG 3 cut(s) 498, 516, 685
BssMI GATC 2 cut(s) 306, 792
BssT1I CCWWGG 1 cut(s) 516
Bst2UI CCWGG 3 cut(s) 111, 261, 687
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 6 cut(s) 236, 359, 412, 600, 704, 787
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 165, 697
BstF5I GGATG 5 cut(s) 73, 283, 380, 526, 736
BstKTI GATC 2 cut(s) 309, 795
BstMAI GTCTC 2 cut(s) 111, 714
BstMBI GATC 2 cut(s) 306, 792
BstMWI GCNNNNNNNGC 2 cut(s) 590, 755
BstNI CCWGG 3 cut(s) 111, 261, 687
BstSCI CCNGG 3 cut(s) 109, 259, 685
BstV1I GCAGC 4 cut(s) 142, 145, 733, 736
BstX2I RGATCY 1 cut(s) 792
BstYI RGATCY 1 cut(s) 792
BsuRI GGCC 2 cut(s) 497, 593
BtsCI GGATG 5 cut(s) 73, 283, 380, 526, 736
BtsIMutI CAGTG 2 cut(s) 178, 321
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 591
Csp6I GTAC 2 cut(s) 369, 378
CviAII CATG 6 cut(s) 94, 122, 622, 724, 742, 804
CviQI GTAC 2 cut(s) 369, 378
DdeI CTNAG 2 cut(s) 165, 697
DpnI GATC 2 cut(s) 308, 794
DpnII GATC 2 cut(s) 306, 792
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 6 cut(s) 236, 359, 412, 600, 704, 787
EarI CTCTTC 6 cut(s) 236, 359, 412, 600, 704, 787
Ecl136II GAGCTC 2 cut(s) 405, 696
Eco130I CCWWGG 1 cut(s) 516
Eco24I GRGCYC 3 cut(s) 250, 407, 698
Eco53kI GAGCTC 2 cut(s) 405, 696
EcoICRI GAGCTC 2 cut(s) 405, 696
EcoO109I RGGNCCY 1 cut(s) 591
EcoRII CCWGG 3 cut(s) 109, 259, 685
EcoT14I CCWWGG 1 cut(s) 516
EcoT38I GRGCYC 3 cut(s) 250, 407, 698
ErhI CCWWGG 1 cut(s) 516
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 6 cut(s) 97, 125, 625, 727, 745, 807
FaiI YATR 9 cut(s) 95, 123, 210, 468, 623, 665, 725, 743, 805
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FatI CATG 6 cut(s) 93, 121, 621, 723, 741, 803
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 4 cut(s) 156, 159, 747, 750
FokI GGATG 5 cut(s) 80, 290, 367, 533, 743
FriOI GRGCYC 3 cut(s) 250, 407, 698
Fsp4HI GCNGC 4 cut(s) 156, 159, 747, 750
FspBI CTAG 4 cut(s) 8, 213, 360, 717
GluI GCNGC 4 cut(s) 156, 159, 747, 750
HaeIII GGCC 2 cut(s) 497, 593
Hin1II CATG 6 cut(s) 97, 125, 625, 727, 745, 807
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 3 cut(s) 97, 118, 236
HpaI GTTAAC 1 cut(s) 82
HphI GGTGA 4 cut(s) 34, 412, 546, 649
Hpy166II GTNNAC 2 cut(s) 82, 349
Hpy188I TCNGA 3 cut(s) 16, 412, 789
Hpy188III TCNNGA 2 cut(s) 449, 796
Hpy8I GTNNAC 2 cut(s) 82, 349
HpyAV CCTTC 3 cut(s) 184, 648, 721
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 2 cut(s) 71, 565
HpyF10VI GCNNNNNNNGC 2 cut(s) 590, 755
HpyF3I CTNAG 2 cut(s) 165, 697
Hsp92II CATG 6 cut(s) 97, 125, 625, 727, 745, 807
Ksp22I TGATCA 1 cut(s) 306
KspAI GTTAAC 1 cut(s) 82
Kzo9I GATC 2 cut(s) 306, 792
LguI GCTCTTC 1 cut(s) 412
LmnI GCTCC 1 cut(s) 296
Lsp1109I GCAGC 4 cut(s) 142, 145, 733, 736
LweI GCATC 4 cut(s) 15, 46, 58, 745
MaeI CTAG 4 cut(s) 8, 213, 360, 717
MaeIII GTNAC 1 cut(s) 137
MalI GATC 2 cut(s) 308, 794
MboI GATC 2 cut(s) 306, 792
MboII GAAGA 7 cut(s) 253, 376, 399, 617, 721, 774, 802
MflI RGATCY 1 cut(s) 792
MhlI GDGCHC 3 cut(s) 250, 407, 698
MluCI AATT 2 cut(s) 267, 574
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 2 cut(s) 39, 95
MseI TTAA 7 cut(s) 81, 255, 336, 486, 537, 549, 672
MspR9I CCNGG 3 cut(s) 111, 261, 687
MvaI CCWGG 3 cut(s) 111, 261, 687
MwoI GCNNNNNNNGC 2 cut(s) 590, 755
NdeII GATC 2 cut(s) 306, 792
NheI GCTAGC 1 cut(s) 7
NlaIII CATG 6 cut(s) 97, 125, 625, 727, 745, 807
NlaIV GGNNCC 1 cut(s) 504
NmeAIII GCCGAG 1 cut(s) 523
NmuCI GTSAC 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 412
PfeI GAWTC 2 cut(s) 97, 236
PflMI CCANNNNNTGG 1 cut(s) 742
PkrI GCNGC 4 cut(s) 157, 160, 748, 751
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PsiI TTATAA 1 cut(s) 468
Psp124BI GAGCTC 2 cut(s) 407, 698
Psp6I CCWGG 3 cut(s) 109, 259, 685
PspGI CCWGG 3 cut(s) 109, 259, 685
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 1 cut(s) 591
PsuI RGATCY 1 cut(s) 792
RsaI GTAC 2 cut(s) 370, 379
RsaNI GTAC 2 cut(s) 369, 378
SacI GAGCTC 2 cut(s) 407, 698
SapI GCTCTTC 1 cut(s) 412
SaqAI TTAA 7 cut(s) 81, 255, 336, 486, 537, 549, 672
SatI GCNGC 4 cut(s) 156, 159, 747, 750
Sau3AI GATC 2 cut(s) 306, 792
Sau96I GGNCC 1 cut(s) 591
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 3 cut(s) 111, 261, 687
SduI GDGCHC 3 cut(s) 250, 407, 698
SfaNI GCATC 4 cut(s) 15, 46, 58, 745
SmlI CTYRAG 2 cut(s) 385, 703
SmoI CTYRAG 2 cut(s) 385, 703
Sse9I AATT 2 cut(s) 267, 574
SspMI CTAG 4 cut(s) 8, 213, 360, 717
SstI GAGCTC 2 cut(s) 407, 698
StyD4I CCNGG 3 cut(s) 109, 259, 685
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 239
TasI AATT 2 cut(s) 267, 574
TatI WGTACW 1 cut(s) 377
TfiI GAWTC 2 cut(s) 97, 236
Tru1I TTAA 7 cut(s) 81, 255, 336, 486, 537, 549, 672
Tru9I TTAA 7 cut(s) 81, 255, 336, 486, 537, 549, 672
TscAI CASTG 2 cut(s) 178, 328
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 4 cut(s) 155, 158, 746, 749
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 4 cut(s) 17, 110, 638, 740
TspGWI ACGGA 2 cut(s) 93, 326
TspRI CASTG 2 cut(s) 178, 328
Van91I CCANNNNNTGG 1 cut(s) 742
XapI RAATTY 1 cut(s) 574
XspI CTAG 4 cut(s) 8, 213, 360, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.