Rh7AG157500

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000182
Physical Location & Seq
Reverse (-)
12852982 .. 12854112
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG157500.1

Sequence Viewer

Length: 933 bp
ATGCCCTTGGGAAAATTTATCAAACTGGATGAAGCTACTACTCAAGGCTCACAGTGTATCTTTGCTCGGGTCTGTCTTGAAATTGATATCAGGCACCCTCTTACCAGAATTCTTGTCATCCACACTAAGGATGACCTAGATGATCCAGTTAGTGTTCGTGTTTCCTATGAAGGTCTGCTTGTGGTTTGCTTCCAATGCGGCAGCCACAAACACAAAATCAATACCTGTCCTTTTAGAGTAAGAGAAGAAGATTTTATCCTAGTGGACCGCTTTTCAGATGTTGATGAAGTTGAGCCCTCTGAGAAAGAACTTGCTCCTGAAATTAAAGCCTTACTTTCTGACAAAGTAATGGCAGTTTTTCCTCAGCCCAATACCTCTGTTATTCGTGGTCAAGGCCCCACTGAATCCTTTGCTGAACAAGATGGACAGGATGATATTAATCCCCTATCTCCAAACTGGACCCTTGTGACCAGTAAAAGGACTCCAGGTGCCAAGTCTTTTACTGGAAAACAAGGTAATGGCAGAGCCACTATTGGAACCAGATCCCTACCAACTCCAAACCGGAGTGGTTTAGTCAAAGATGGCATTTCCTTCAAAGATGCTACTCGGGGTGGTATCACTATTGGTGGCCCGCTTAGGACTATGAATAAGATCGGAAATTCTGCTGCTGATCTTTCTCCCAACTCCCAGGACTTGGACAACTTTATGGATGCCAAAGAAGATGATGAAAATGCTTTCATCAATAATCTAATTGCTCCTGAAAATTCTGCCGTGGAGGCTTGGGACAACGACAACCTGGAAGATCGCATGGAAGTTAGCTCTGGATATCGTAGCCCACTGAAACGATCCAGAGACATGATGGATGATATGCCTACTGAGAATGACAAGAACAAGGAGGCTGGTCCCTCCCAATTTAATAAAATCTCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

310

Amino Acids

34.26

Weight (kDa)

5.0

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 93, 488
AccB7I CCANNNNNTGG 1 cut(s) 694
AciI CCGC 3 cut(s) 198, 268, 632
AclWI GGATC 3 cut(s) 137, 537, 840
AcsI RAATTY 4 cut(s) 14, 108, 658, 763
AfiI CCNNNNNNNGG 3 cut(s) 127, 477, 694
AgsI TTSAA 2 cut(s) 80, 595
AjnI CCWGG 3 cut(s) 484, 687, 795
AluBI AGCT 2 cut(s) 35, 819
AluI AGCT 2 cut(s) 35, 819
Alw26I GTCTC 1 cut(s) 846
AlwI GGATC 3 cut(s) 137, 537, 840
Ama87I CYCGRG 2 cut(s) 66, 606
AoxI GGCC 2 cut(s) 394, 628
ApeKI GCWGC 2 cut(s) 201, 665
ApoI RAATTY 4 cut(s) 14, 108, 658, 763
AseI ATTAAT 1 cut(s) 438
AspS9I GGNCC 5 cut(s) 265, 395, 459, 629, 902
AvaI CYCGRG 2 cut(s) 66, 606
AvaII GGWCC 3 cut(s) 265, 459, 902
BanI GGYRCC 2 cut(s) 93, 488
BanII GRGCYC 1 cut(s) 297
BbvCI CCTCAGC 1 cut(s) 363
BbvI GCAGC 2 cut(s) 213, 652
BccI CCATC 3 cut(s) 416, 575, 853
BceAI ACGGC 1 cut(s) 755
BciT130I CCWGG 3 cut(s) 486, 689, 797
BcoDI GTCTC 1 cut(s) 846
BfaI CTAG 2 cut(s) 137, 260
BglI GCCNNNNNGGC 1 cut(s) 776
BisI GCNGC 3 cut(s) 199, 202, 666
BlsI GCNGC 3 cut(s) 200, 203, 667
Bme1390I CCNGG 3 cut(s) 486, 689, 797
Bme18I GGWCC 3 cut(s) 265, 459, 902
BmeT110I CYCGRG 2 cut(s) 66, 606
BmgT120I GGNCC 5 cut(s) 265, 395, 459, 629, 902
BmiI GGNNCC 6 cut(s) 95, 397, 461, 490, 538, 904
BmrFI CCNGG 3 cut(s) 486, 689, 797
BmsI GCATC 2 cut(s) 589, 700
BpmI CTGGAG 1 cut(s) 468
Bpu10I CCTNAGC 2 cut(s) 363, 635
BpuEI CTTGAG 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 438
BsaJI CCNNGG 3 cut(s) 6, 687, 771
BsaWI WCCGGW 1 cut(s) 561
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 477, 694
Bse1I ACTGG 5 cut(s) 30, 146, 461, 471, 508
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 3 cut(s) 486, 689, 797
BseDI CCNNGG 3 cut(s) 6, 687, 771
BseGI GGATG 6 cut(s) 34, 117, 136, 436, 715, 868
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 3 cut(s) 127, 477, 694
BseMII CTCAG 3 cut(s) 291, 377, 867
BseNI ACTGG 5 cut(s) 30, 146, 461, 471, 508
BseXI GCAGC 2 cut(s) 213, 652
BshFI GGCC 2 cut(s) 396, 630
BshNI GGYRCC 2 cut(s) 93, 488
BsiHKCI CYCGRG 2 cut(s) 66, 606
BsiSI CCGG 1 cut(s) 562
BslFI GGGAC 2 cut(s) 797, 888
BslI CCNNNNNNNGG 3 cut(s) 127, 477, 694
BsmAI GTCTC 1 cut(s) 846
BsmFI GGGAC 2 cut(s) 797, 888
BsnI GGCC 2 cut(s) 396, 630
BsoBI CYCGRG 2 cut(s) 66, 606
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 6 cut(s) 142, 542, 651, 670, 802, 845
BspACI CCGC 3 cut(s) 198, 268, 632
BspANI GGCC 2 cut(s) 396, 630
BspCNI CTCAG 3 cut(s) 292, 376, 868
BspLI GGNNCC 6 cut(s) 95, 397, 461, 490, 538, 904
BspPI GGATC 3 cut(s) 137, 537, 840
BspT107I GGYRCC 2 cut(s) 93, 488
BsrI ACTGG 5 cut(s) 30, 146, 461, 471, 508
BssECI CCNNGG 3 cut(s) 6, 687, 771
BssMI GATC 6 cut(s) 142, 542, 651, 670, 802, 845
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 3 cut(s) 486, 689, 797
Bst4CI ACNGT 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 5 cut(s) 126, 300, 363, 635, 876
BstDSI CCRYGG 1 cut(s) 771
BstF5I GGATG 6 cut(s) 34, 117, 136, 436, 715, 868
BstKTI GATC 6 cut(s) 145, 545, 654, 673, 805, 848
BstMAI GTCTC 1 cut(s) 846
BstMBI GATC 6 cut(s) 142, 542, 651, 670, 802, 845
BstMWI GCNNNNNNNGC 2 cut(s) 195, 776
BstNI CCWGG 3 cut(s) 486, 689, 797
BstSCI CCNGG 3 cut(s) 484, 687, 795
BstV1I GCAGC 2 cut(s) 213, 652
BstX2I RGATCY 1 cut(s) 542
BstYI RGATCY 1 cut(s) 542
BsuRI GGCC 2 cut(s) 396, 630
BtgI CCRYGG 1 cut(s) 771
BtsCI GGATG 6 cut(s) 34, 117, 136, 436, 715, 868
BtsIMutI CAGTG 3 cut(s) 59, 399, 836
Cac8I GCNNGC 1 cut(s) 632
Cfr13I GGNCC 5 cut(s) 265, 395, 459, 629, 902
CviAII CATG 2 cut(s) 808, 856
DdeI CTNAG 5 cut(s) 126, 300, 363, 635, 876
DpnI GATC 6 cut(s) 144, 544, 653, 672, 804, 847
DpnII GATC 6 cut(s) 142, 542, 651, 670, 802, 845
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 297
Eco32I GATATC 2 cut(s) 88, 827
Eco47I GGWCC 3 cut(s) 265, 459, 902
Eco88I CYCGRG 2 cut(s) 66, 606
EcoO109I RGGNCCY 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 108
EcoRII CCWGG 3 cut(s) 484, 687, 795
EcoRV GATATC 2 cut(s) 88, 827
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 2 cut(s) 811, 859
FaiI YATR 6 cut(s) 168, 644, 707, 809, 857, 869
FalI AAGNNNNNCTT 4 cut(s) 162, 194, 318, 350
FaqI GGGAC 2 cut(s) 797, 888
FatI CATG 2 cut(s) 807, 855
FauI CCCGC 1 cut(s) 639
Fnu4HI GCNGC 3 cut(s) 199, 202, 666
FokI GGATG 6 cut(s) 41, 104, 143, 443, 722, 875
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 3 cut(s) 199, 202, 666
FspBI CTAG 2 cut(s) 137, 260
GluI GCNGC 3 cut(s) 199, 202, 666
GsuI CTGGAG 1 cut(s) 468
HaeIII GGCC 2 cut(s) 396, 630
HapII CCGG 1 cut(s) 562
Hin1II CATG 2 cut(s) 811, 859
HinfI GANTC 2 cut(s) 404, 481
HpaII CCGG 1 cut(s) 562
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 4 cut(s) 277, 301, 340, 656
Hpy188III TCNNGA 5 cut(s) 77, 317, 758, 822, 849
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 2 cut(s) 164, 601
HpyCH4III ACNGT 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 776
HpyF3I CTNAG 5 cut(s) 126, 300, 363, 635, 876
Hsp92II CATG 2 cut(s) 811, 859
Kzo9I GATC 6 cut(s) 142, 542, 651, 670, 802, 845
LmnI GCTCC 2 cut(s) 319, 760
Lsp1109I GCAGC 2 cut(s) 213, 652
LweI GCATC 2 cut(s) 589, 700
MaeI CTAG 2 cut(s) 137, 260
MaeIII GTNAC 1 cut(s) 466
MalI GATC 6 cut(s) 144, 544, 653, 672, 804, 847
MboI GATC 6 cut(s) 142, 542, 651, 670, 802, 845
MboII GAAGA 4 cut(s) 257, 260, 731, 812
MflI RGATCY 1 cut(s) 542
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 8 cut(s) 14, 81, 108, 321, 658, 750, 763, 911
MlyI GAGTC 1 cut(s) 475
MnlI CCTC 7 cut(s) 108, 307, 372, 385, 769, 889, 916
MseI TTAA 3 cut(s) 324, 438, 915
MspI CCGG 1 cut(s) 562
MspR9I CCNGG 3 cut(s) 486, 689, 797
MvaI CCWGG 3 cut(s) 486, 689, 797
MwoI GCNNNNNNNGC 2 cut(s) 195, 776
NdeII GATC 6 cut(s) 142, 542, 651, 670, 802, 845
NlaIII CATG 2 cut(s) 811, 859
NlaIV GGNNCC 6 cut(s) 95, 397, 461, 490, 538, 904
NmuCI GTSAC 1 cut(s) 466
PfeI GAWTC 1 cut(s) 404
PflMI CCANNNNNTGG 1 cut(s) 694
PkrI GCNGC 3 cut(s) 200, 203, 667
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
PshBI ATTAAT 1 cut(s) 438
Psp6I CCWGG 3 cut(s) 484, 687, 795
PspGI CCWGG 3 cut(s) 484, 687, 795
PspN4I GGNNCC 6 cut(s) 95, 397, 461, 490, 538, 904
PspPI GGNCC 5 cut(s) 265, 395, 459, 629, 902
PsuI RGATCY 1 cut(s) 542
SaqAI TTAA 3 cut(s) 324, 438, 915
SatI GCNGC 3 cut(s) 199, 202, 666
Sau3AI GATC 6 cut(s) 142, 542, 651, 670, 802, 845
Sau96I GGNCC 5 cut(s) 265, 395, 459, 629, 902
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 3 cut(s) 486, 689, 797
SduI GDGCHC 1 cut(s) 297
SetI ASST 9 cut(s) 37, 138, 175, 227, 377, 490, 517, 798, 821
SfaNI GCATC 2 cut(s) 589, 700
SinI GGWCC 3 cut(s) 265, 459, 902
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 8 cut(s) 14, 81, 108, 321, 658, 750, 763, 911
SsiI CCGC 3 cut(s) 198, 268, 632
SspMI CTAG 2 cut(s) 137, 260
StyD4I CCNGG 3 cut(s) 484, 687, 795
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 54
TasI AATT 8 cut(s) 14, 81, 108, 321, 658, 750, 763, 911
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 3 cut(s) 324, 438, 915
Tru9I TTAA 3 cut(s) 324, 438, 915
TscAI CASTG 3 cut(s) 59, 406, 843
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 2 cut(s) 201, 665
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 6 cut(s) 45, 183, 300, 659, 727, 741
TspRI CASTG 3 cut(s) 59, 406, 843
Van91I CCANNNNNTGG 1 cut(s) 694
VpaK11BI GGWCC 3 cut(s) 265, 459, 902
VspI ATTAAT 1 cut(s) 438
XapI RAATTY 4 cut(s) 14, 108, 658, 763
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XspI CTAG 2 cut(s) 137, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.