Rh4AG224400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000182
Physical Location & Seq
Reverse (-)
52454644 .. 52455023
380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG224400.1

Sequence Viewer

Length: 312 bp
ATGAAGAAGATGAGGGAGACCTCCCCTTTGATATGTCATAAGCAGAAGACCTTGGAATGCCCTCGCAAAAAGAAAGATCAGCATTTCATTATAGTTGATAGAGAAGAGGGAGACAATGATGTGGAACCGGAGGGCATGGAGTTGGACTCTGAGATTAGGGGCCTTGCCTTTAAAAATGTCATGATTTATTTCCCCCAGCCGGCCAAAAGAGATGTGGATCATGATGATGGCAACCTAAACAATGCAAACCTAAACCCCCTTCCCCAGGATGGACCACTGTCCATCGAAGGAGTAAGGCGACTTCAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.88

Weight (kDa)

5.9

Isoelectric Point (pI)

62.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 201
AfiI CCNNNNNNNGG 3 cut(s) 199, 265, 269
AgsI TTSAA 1 cut(s) 305
AjnI CCWGG 1 cut(s) 264
Alw26I GTCTC 2 cut(s) 11, 105
AlwI GGATC 1 cut(s) 225
AoxI GGCC 2 cut(s) 160, 201
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
AspS9I GGNCC 2 cut(s) 160, 272
AvaII GGWCC 1 cut(s) 272
BarI GAAGNNNNNNTAC 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 53
BccI CCATC 3 cut(s) 221, 263, 290
BciT130I CCWGG 1 cut(s) 266
BcoDI GTCTC 2 cut(s) 11, 105
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 2 cut(s) 160, 272
BmiI GGNNCC 2 cut(s) 126, 161
BmrFI CCNGG 1 cut(s) 266
BoxI GACNNNNGTC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 53
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BsaBI GATNNNNATC 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 51, 264
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 265, 269
Bse118I RCCGGY 1 cut(s) 199
Bse8I GATNNNNATC 1 cut(s) 216
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 2 cut(s) 51, 264
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 3 cut(s) 199, 265, 269
BseMII CTCAG 1 cut(s) 141
BseYI CCCAGC 1 cut(s) 195
BshFI GGCC 2 cut(s) 162, 203
BsiSI CCGG 2 cut(s) 128, 200
BslI CCNNNNNNNGG 3 cut(s) 199, 265, 269
BsmAI GTCTC 2 cut(s) 11, 105
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 2 cut(s) 162, 203
Bso31I GGTCTC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 76, 217
BspANI GGCC 2 cut(s) 162, 203
BspCNI CTCAG 1 cut(s) 142
BspHI TCATGA 2 cut(s) 180, 220
BspLI GGNNCC 2 cut(s) 126, 161
BspPI GGATC 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 2 cut(s) 51, 264
BssMI GATC 2 cut(s) 76, 217
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 150
BstENI CCTNNNNNAGG 1 cut(s) 263
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 2 cut(s) 79, 220
BstMAI GTCTC 2 cut(s) 11, 105
BstMBI GATC 2 cut(s) 76, 217
BstNI CCWGG 1 cut(s) 266
BstPAI GACNNNNGTC 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 53
BsuRI GGCC 2 cut(s) 162, 203
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 201
CciI TCATGA 2 cut(s) 180, 220
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 160, 272
CviAII CATG 3 cut(s) 136, 181, 221
CviJI RGCY 3 cut(s) 162, 199, 203
CviKI_1 RGCY 3 cut(s) 162, 199, 203
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 78, 219
DpnII GATC 2 cut(s) 76, 217
DraI TTTAAA 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 272
EcoNI CCTNNNNNAGG 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 3 cut(s) 139, 184, 224
FaiI YATR 6 cut(s) 34, 39, 92, 137, 182, 222
FatI CATG 3 cut(s) 135, 180, 220
FokI GGATG 1 cut(s) 281
GsaI CCCAGC 1 cut(s) 199
HaeIII GGCC 2 cut(s) 162, 203
HapII CCGG 2 cut(s) 128, 200
Hin1II CATG 3 cut(s) 139, 184, 224
HinfI GANTC 1 cut(s) 146
HpaII CCGG 2 cut(s) 128, 200
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 181, 221
HpyAV CCTTC 2 cut(s) 269, 281
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 3 cut(s) 139, 184, 224
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
Kzo9I GATC 2 cut(s) 76, 217
LpnPI CCDG 5 cut(s) 141, 209, 213, 251, 278
MalI GATC 2 cut(s) 78, 219
MboI GATC 2 cut(s) 76, 217
MboII GAAGA 4 cut(s) 16, 19, 58, 116
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 5 cut(s) 6, 31, 72, 100, 124
MroNI GCCGGC 1 cut(s) 199
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 2 cut(s) 128, 200
MspR9I CCNGG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 1 cut(s) 266
NaeI GCCGGC 1 cut(s) 201
NdeII GATC 2 cut(s) 76, 217
NgoMIV GCCGGC 1 cut(s) 199
NlaIII CATG 3 cut(s) 139, 184, 224
NlaIV GGNNCC 2 cut(s) 126, 161
PagI TCATGA 2 cut(s) 180, 220
PctI GAATGC 1 cut(s) 62
PdiI GCCGGC 1 cut(s) 201
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PshAI GACNNNNGTC 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 264
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 126, 161
PspPI GGNCC 2 cut(s) 160, 272
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 1 cut(s) 171
Sau3AI GATC 2 cut(s) 76, 217
Sau96I GGNCC 2 cut(s) 160, 272
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 266
SetI ASST 4 cut(s) 23, 53, 237, 252
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 285
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 282
TspDTI ATGAA 2 cut(s) 17, 76
TspRI CASTG 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 272
XagI CCTNNNNNAGG 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.