Rh3BG368300

acid phosphatase activity

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
45937506 .. 45937944
439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG368300.1

Sequence Viewer

Length: 439 bp
ATGTTTGCAAGGATCAAGATTGAGCTGGATCTGCGCTACCCTCTGAAAAGAACGGTCTTGGTCAATAATTCATATCATAAGTCTCCAACATTTGTTTTGGTCTCTTATGAAGTAATTTTCGAGGTGTGTTTTAGATGTGGCCTCTACCGCCAAAAGAATCACGTCTGTCCTCGAAGAAATATTAAGGACAGTTTTTTCATGGTTGAAAGAATGAAGAATGAGCAAGTGGTTTATCCAGCAGACATGGCTAATAATGAGTTCATTAAGCCTCTACTTTCAAATGATATCTCTATCATCTTCCTACAACCAATGTTCAATTATTATGATGCGGCAAATTATGGAACCAATACGGGAACCTTTTCTTCAAATGCTGGAGATCAGGATCCGGATCAAGACCATGGTTCTTGGAAGATCGTTTCTCTGAGGGAAAAGGGGAAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

17.06

Weight (kDa)

8.74

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 385
AciI CCGC 2 cut(s) 148, 329
AclWI GGATC 5 cut(s) 20, 36, 377, 390, 396
AgsI TTSAA 4 cut(s) 206, 279, 316, 366
AjiI CACGTC 1 cut(s) 163
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw26I GTCTC 2 cut(s) 87, 106
AlwI GGATC 5 cut(s) 20, 36, 377, 390, 396
Aor13HI TCCGGA 1 cut(s) 385
AoxI GGCC 1 cut(s) 139
Asp700I GAANNNNTTC 1 cut(s) 358
AspLEI GCGC 1 cut(s) 36
BamHI GGATCC 1 cut(s) 382
BcoDI GTCTC 2 cut(s) 87, 106
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
BmgBI CACGTC 1 cut(s) 163
BmiI GGNNCC 3 cut(s) 343, 355, 384
BmsI GCATC 1 cut(s) 316
BpmI CTGGAG 1 cut(s) 393
BsaBI GATNNNNATC 2 cut(s) 381, 387
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 397
BsaWI WCCGGW 1 cut(s) 385
Bse8I GATNNNNATC 2 cut(s) 381, 387
BseAI TCCGGA 1 cut(s) 385
BseDI CCNNGG 1 cut(s) 397
BseJI GATNNNNATC 2 cut(s) 381, 387
BseMII CTCAG 1 cut(s) 413
BshFI GGCC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 386
BsmAI GTCTC 2 cut(s) 87, 106
BsnI GGCC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 106
Bsp13I TCCGGA 1 cut(s) 385
Bsp143I GATC 6 cut(s) 12, 28, 376, 382, 388, 411
Bsp19I CCATGG 1 cut(s) 397
BspACI CCGC 2 cut(s) 148, 329
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 414
BspEI TCCGGA 1 cut(s) 385
BspLI GGNNCC 3 cut(s) 343, 355, 384
BspPI GGATC 5 cut(s) 20, 36, 377, 390, 396
BspTNI GGTCTC 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 6 cut(s) 12, 28, 376, 382, 388, 411
BssT1I CCWWGG 1 cut(s) 397
Bst4CI ACNGT 2 cut(s) 55, 191
BstDEI CTNAG 1 cut(s) 422
BstDSI CCRYGG 1 cut(s) 397
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 6 cut(s) 15, 31, 379, 385, 391, 414
BstMAI GTCTC 2 cut(s) 87, 106
BstMBI GATC 6 cut(s) 12, 28, 376, 382, 388, 411
BstMWI GCNNNNNNNGC 3 cut(s) 31, 147, 245
BstX2I RGATCY 2 cut(s) 28, 382
BstYI RGATCY 2 cut(s) 28, 382
BsuRI GGCC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 397
BtrI CACGTC 1 cut(s) 163
CfoI GCGC 1 cut(s) 36
CviAII CATG 3 cut(s) 199, 244, 398
CviJI RGCY 4 cut(s) 25, 141, 248, 268
CviKI_1 RGCY 4 cut(s) 25, 141, 248, 268
DdeI CTNAG 1 cut(s) 422
DpnI GATC 6 cut(s) 14, 30, 378, 384, 390, 413
DpnII GATC 6 cut(s) 12, 28, 376, 382, 388, 411
Eco130I CCWWGG 1 cut(s) 397
Eco31I GGTCTC 1 cut(s) 106
Eco32I GATATC 1 cut(s) 286
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 3 cut(s) 202, 247, 401
FaiI YATR 8 cut(s) 73, 78, 108, 200, 245, 324, 339, 399
FatI CATG 3 cut(s) 198, 243, 397
Fnu4HI GCNGC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 330
GlaI GCGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 386
HhaI GCGC 1 cut(s) 36
Hin1II CATG 3 cut(s) 202, 247, 401
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 1 cut(s) 157
HpaII CCGG 1 cut(s) 386
Hpy188I TCNGA 2 cut(s) 45, 423
Hpy188III TCNNGA 4 cut(s) 16, 380, 386, 392
HpyCH4III ACNGT 2 cut(s) 55, 191
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 147, 245
HpyF3I CTNAG 1 cut(s) 422
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 3 cut(s) 202, 247, 401
HspAI GCGC 1 cut(s) 34
Kpn2I TCCGGA 1 cut(s) 385
Kzo9I GATC 6 cut(s) 12, 28, 376, 382, 388, 411
LpnPI CCDG 5 cut(s) 11, 249, 357, 365, 399
LweI GCATC 1 cut(s) 316
MaeII ACGT 1 cut(s) 162
MalI GATC 6 cut(s) 14, 30, 378, 384, 390, 413
MboI GATC 6 cut(s) 12, 28, 376, 382, 388, 411
MboII GAAGA 5 cut(s) 186, 226, 289, 354, 421
MflI RGATCY 2 cut(s) 28, 382
MluCI AATT 4 cut(s) 67, 114, 316, 334
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 6 cut(s) 51, 115, 152, 180, 279, 417
MroI TCCGGA 1 cut(s) 385
MroXI GAANNNNTTC 1 cut(s) 358
MseI TTAA 2 cut(s) 183, 264
MspI CCGG 1 cut(s) 386
MwoI GCNNNNNNNGC 3 cut(s) 31, 147, 245
NcoI CCATGG 1 cut(s) 397
NdeII GATC 6 cut(s) 12, 28, 376, 382, 388, 411
NlaIII CATG 3 cut(s) 202, 247, 401
NlaIV GGNNCC 3 cut(s) 343, 355, 384
PdmI GAANNNNTTC 1 cut(s) 358
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 1 cut(s) 331
PspN4I GGNNCC 3 cut(s) 343, 355, 384
PsuI RGATCY 2 cut(s) 28, 382
SaqAI TTAA 2 cut(s) 183, 264
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 6 cut(s) 12, 28, 376, 382, 388, 411
SetI ASST 4 cut(s) 27, 126, 165, 359
SfaNI GCATC 1 cut(s) 316
Sse9I AATT 4 cut(s) 67, 114, 316, 334
SsiI CCGC 2 cut(s) 148, 329
SspI AATATT 1 cut(s) 181
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 2 cut(s) 55, 191
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 120, 172
TasI AATT 4 cut(s) 67, 114, 316, 334
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 2 cut(s) 183, 264
Tru9I TTAA 2 cut(s) 183, 264
TspDTI ATGAA 5 cut(s) 60, 123, 187, 227, 250
XmnI GAANNNNTTC 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.