Rh5DG427200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
68123100 .. 68123588
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG427200.1

Sequence Viewer

Length: 357 bp
ATGGAAATTAAGGACCAAGATAACGAACAGATTCGAGCCACTACTTTATGTTTGCTTTTGAGAAACAATCTTATGGGCTATCATGGTGCTGGGACCCTAGAGTCGGCGGCAATCATATGCCTACCAAAGATGCTCTTTCAGCTTTCCTGCAAGGTTTCGATGATGGAGTTACGTCATTCTCCTCCCCTATTCGCTCGTCCTCCTCGACATGTGGTTTGGGGGTTTTTATTTTGCCTCGACTATGCAAACGTTCATCTCCGTCTTGAGCAAAGAACAATACTTTCAATTAGGGAAGATTTCTTTCCTTTTCTTCTACTATTTATGTTCTGGTTTATGTTTTTAATTATTGGATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.87

Weight (kDa)

7.73

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 100
AciI CCGC 1 cut(s) 107
AclI AACGTT 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 103
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 1 cut(s) 285
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
Asp700I GAANNNNTTC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 13, 93
AvaII GGWCC 2 cut(s) 13, 93
BccI CCATC 1 cut(s) 157
BfaI CTAG 1 cut(s) 98
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme18I GGWCC 2 cut(s) 13, 93
BmgT120I GGNCC 2 cut(s) 13, 93
BmiI GGNNCC 2 cut(s) 94, 95
BmsI GCATC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 103
BseRI GAGGAG 2 cut(s) 171, 192
BseYI CCCAGC 1 cut(s) 89
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 106
BspACI CCGC 1 cut(s) 107
BspLI GGNNCC 2 cut(s) 94, 95
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 13, 93
CviAII CATG 2 cut(s) 83, 209
CviJI RGCY 3 cut(s) 38, 78, 142
CviKI_1 RGCY 3 cut(s) 38, 78, 142
DrdI GACNNNNNNGTC 1 cut(s) 100
DseDI GACNNNNNNGTC 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 13, 93
EcoO109I RGGNCCY 1 cut(s) 93
FaeI CATG 2 cut(s) 86, 212
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 1 cut(s) 106
FatI CATG 2 cut(s) 82, 208
FauNDI CATATG 1 cut(s) 116
Fnu4HI GCNGC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 98
GluI GCNGC 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 93
Hin1II CATG 2 cut(s) 86, 212
HinfI GANTC 2 cut(s) 31, 101
Hpy188III TCNNGA 1 cut(s) 263
HpyCH4IV ACGT 2 cut(s) 172, 249
HpyCH4V TGCA 2 cut(s) 150, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpySE526I ACGT 2 cut(s) 172, 249
Hsp92II CATG 2 cut(s) 86, 212
KflI GGGWCCC 1 cut(s) 93
LpnPI CCDG 3 cut(s) 75, 160, 313
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 98
MaeII ACGT 2 cut(s) 172, 249
MaeIII GTNAC 1 cut(s) 168
MboII GAAGA 2 cut(s) 302, 305
MluCI AATT 3 cut(s) 6, 285, 342
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 4 cut(s) 192, 210, 213, 245
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 2 cut(s) 9, 341
MwoI GCNNNNNNNGC 1 cut(s) 139
NdeI CATATG 1 cut(s) 116
NlaIII CATG 2 cut(s) 86, 212
NlaIV GGNNCC 2 cut(s) 94, 95
NspI RCATGY 1 cut(s) 212
PciI ACATGT 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PpuMI RGGWCCY 1 cut(s) 93
PscI ACATGT 1 cut(s) 208
Psp1406I AACGTT 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 94, 95
PspPI GGNCC 2 cut(s) 13, 93
PspPPI RGGWCCY 1 cut(s) 93
SaqAI TTAA 2 cut(s) 9, 341
SatI GCNGC 1 cut(s) 108
Sau96I GGNCC 2 cut(s) 13, 93
SchI GAGTC 1 cut(s) 110
SetI ASST 4 cut(s) 144, 156, 175, 252
SfaNI GCATC 1 cut(s) 120
SinI GGWCC 2 cut(s) 13, 93
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 3 cut(s) 6, 285, 342
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 98
TaiI ACGT 2 cut(s) 175, 252
TaqI TCGA 4 cut(s) 34, 158, 205, 237
TasI AATT 3 cut(s) 6, 285, 342
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 2 cut(s) 9, 341
Tru9I TTAA 2 cut(s) 9, 341
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 13, 93
XceI RCATGY 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.