Rw1G008820

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000182
Physical Location & Seq
Forward (+)
19425390 .. 19427779
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008820.1

Sequence Viewer

Length: 2001 bp
ATGAAACGCGCGCTACGCGCTCACCTCAATCCTAGAGCTCTGCTAGTGTTTCTTCGCTTCAAGTACATAGCCGCCGACGAAAACGGATGGTGGCCTCCCTGGCCTGACATTTACATCGCCACCGAGAAACAGCTCCTCGAGCTCCTAATTCCAATTTTCCCTCTTCACAACGATTCTCATTATTACTCTTTCACTTTGCACAACGTTCCTCATGATGAATCTATTGTCCATCGCCTCACCTACAGTTACATTTTGTCTTGGCAGTTCCCAATTTCTGATTTTGCCTCCACCGTAATGCCTCTTCGAGCTGTCGGCCAGGACTGGGTTCATGTCCTTCTAGCCCAACGGCTGTCTGTTCAGTTCCCAATTTCTGATCTCGCCTCCACCGTTGTACCGCCTCGAGCTGCCGAACAGGAGTGGGTACATGTCCTTCTTGCCCAACTGCCGTCTGCTCAAGCCCCAACAGTTGAACCTCTCAGACTTCCTTATTTATTTGATCCCATCACGACTCAACTGGTTCATCCATCTTCACCCCCAACTTTTCTTTATCCAGTATCGTTACGACGTTACCTTCTCGCCATGGCTTTCAGCCCAAATGCTTGGGCCCAAGCTAGTCCTCCACGAAGGCCCCCTATTTTTAATCCTCTCCCTCGACCAAGCCCAAATGAACCTCCTTTTGTTACCAATTTTGGTGGCACAAGGGTAGTTGTCGAAAGTAACCAAACTCAGATCTTTGTCCCCAAACACGCCATTAATACCAATGAACACCTCACTAACTACTGCCTCCTTGCCAAGATCTTTGGCAAAAGAGTCTCCCCTAGGAAGATTGCTAGGAAGTGCAACCAAATGTGGGCTGGTCTCCAGGGAACAGTCAAGCTTATCCAGATGGCTACTGGATGGTTTTGCCTTGAATTCACTTATCAGCAGGACATCGATTTTGTCCTCGATAATAGGCCATGGTTTGTCAAGGTGTGTATGGAGATTGATTTACGCACTCCCCTGAAACGTGTTTTGGTCATTCGTGAAGAAGAAGAGGGCGATCTGCCTTTTGATTTGGTTAGTAATCCTGCTAAAGTCTTTGTCTCTTATGAAACCATTTTTGAAGTATGCTTTGAATGCGGGAGTTATAAGCATAAGATCAGGGACTGCACTTTTAAAAGAAGGGATAAGCATTTTGTGATGGTTGATAAGGAGGAAGGGGATGATGATGTTGCCCCTGCTGACATGGATGTCGATTCGGAGGTCAGGCAATTAGCAACAGCGAAGGTTATGCTCTTTTTCCCTCAAAGTGCCAAGGAGGCGAATACTGAGGAGGTTGACCCTAATGATCCCACTGTCAATCCCTCATCACCTGAATGGCAGTTGGTCCGTGGCAGGAACCAGCACTACTCCTTAGCTAAGGGATCAGATGGTGCTAAGCTGCGCCAGAAAGGGAAGGCAGTAATGGAGTCGGGTAGTGCTGGGCAGAATACTCGCAAGGACGCTTTGGTTAAACCAGGCATTAACTTTAAGGATGCAACCCAGGGACGCGCTACTCTTATCATTGGTGACAAGGAGACTCACAATAGGCCCTATAACCCCCACAGGCTCTCATCCTCCAGTGAGGAGGAAGTGGTGAGCGTATCTAATTCTGAAACTTCTGTCTTATCTTTTTCCTCTTTTCCTGAAATTGCTAAACTCTATAACTATGATCCGGAAGACATCTATTCCCCATCCGCTGCTTTAGATTATTTTTATGCTAATTGTGAACCCTCAAACGTGCAGTTTGAGAATTTCAGTGATGTTAGAGCATCTGCTTTTGCTGATGAGGATCAGACTATGAATGAGTATGCCGTTAGGATGATTAATGGGAGAAGGGCGCTGGTTTGTGCAACTGAGAACTCGGGAAGAGATTCTGGATCAAAGAAACGAACTAGGGAAATAGCTGATGATCAAAGCATGGCGGAGGCTGCTGAAAATGAGGAGGCCAACACCTCTTCTCACAAAGCCCACAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

666

Amino Acids

75.5

Weight (kDa)

6.02

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 257 - 325 1.4e-06 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1128
AasI GACNNNNNNGTC 1 cut(s) 1229
AccII CGCG 4 cut(s) 9, 11, 18, 1530
AccIII TCCGGA 1 cut(s) 1693
AciI CCGC 5 cut(s) 72, 395, 1119, 1716, 1943
AclI AACGTT 1 cut(s) 204
AclWI GGATC 6 cut(s) 491, 1322, 1411, 1685, 1818, 1906
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 2 cut(s) 911, 1771
AfaI GTAC 3 cut(s) 65, 393, 423
AfiI CCNNNNNNNGG 2 cut(s) 322, 850
AflIII ACRYGT 2 cut(s) 424, 1006
AgsI TTSAA 5 cut(s) 61, 470, 911, 1103, 1115
AjnI CCWGG 5 cut(s) 98, 315, 861, 1495, 1521
AjuI GAANNNNNNNTTGG 2 cut(s) 995, 1027
Alw21I GWGCWC 2 cut(s) 40, 144
Alw26I GTCTC 4 cut(s) 817, 863, 1087, 1550
AlwI GGATC 6 cut(s) 491, 1322, 1411, 1685, 1818, 1906
AlwNI CAGNNNCTG 1 cut(s) 1146
Ama87I CYCGRG 3 cut(s) 137, 399, 1882
Aor13HI TCCGGA 1 cut(s) 1693
AoxI GGCC 8 cut(s) 92, 101, 313, 603, 626, 953, 1568, 1965
ApaI GGGCCC 1 cut(s) 607
ApeKI GCWGC 4 cut(s) 404, 1420, 1718, 1949
ApoI RAATTY 2 cut(s) 911, 1771
ArsI GACNNNNNNTTYG 2 cut(s) 920, 952
AseI ATTAAT 2 cut(s) 753, 1845
Asp700I GAANNNNTTC 1 cut(s) 1891
AspA2I CCTAGG 1 cut(s) 818
AspLEI GCGC 6 cut(s) 11, 13, 20, 1425, 1532, 1861
AspS9I GGNCC 5 cut(s) 603, 604, 627, 1366, 1569
AsuHPI GGTGA 6 cut(s) 14, 229, 522, 1341, 1559, 1627
AvaI CYCGRG 3 cut(s) 137, 399, 1882
AvaII GGWCC 1 cut(s) 1366
AvrII CCTAGG 1 cut(s) 818
BaeGI GKGCMC 1 cut(s) 607
BaeI ACNNNNGTAYC 2 cut(s) 375, 408
BanII GRGCYC 3 cut(s) 40, 144, 607
BarI GAAGNNNNNNTAC 4 cut(s) 285, 317, 414, 446
BbsI GAAGAC 1 cut(s) 1704
Bbv12I GWGCWC 2 cut(s) 40, 144
BbvI GCAGC 4 cut(s) 391, 1407, 1705, 1936
BccI CCATC 9 cut(s) 81, 237, 509, 532, 880, 891, 1174, 1403, 1720
BceAI ACGGC 3 cut(s) 362, 430, 1817
BcgI CGANNNNNNTGC 4 cut(s) 1252, 1286, 1454, 1488
BciT130I CCWGG 5 cut(s) 100, 317, 863, 1497, 1523
BclI TGATCA 1 cut(s) 1930
BcoDI GTCTC 4 cut(s) 817, 863, 1087, 1550
BfaI CTAG 7 cut(s) 33, 44, 338, 612, 819, 831, 1914
BfmI CTRYAG 1 cut(s) 241
BfoI RGCGCY 1 cut(s) 1862
BglI GCCNNNNNGGC 2 cut(s) 100, 1298
BglII AGATCT 2 cut(s) 729, 795
BisI GCNGC 5 cut(s) 72, 405, 1421, 1719, 1950
BlnI CCTAGG 1 cut(s) 818
BlpI GCTNAGC 1 cut(s) 1416
BlsI GCNGC 5 cut(s) 73, 406, 1422, 1720, 1951
Bme1390I CCNGG 5 cut(s) 100, 317, 863, 1497, 1523
Bme18I GGWCC 1 cut(s) 1366
BmeT110I CYCGRG 3 cut(s) 137, 399, 1882
BmgT120I GGNCC 5 cut(s) 603, 604, 627, 1366, 1569
BmiI GGNNCC 3 cut(s) 605, 629, 1379
BmrFI CCNGG 5 cut(s) 100, 317, 863, 1497, 1523
BmrI ACTGGG 1 cut(s) 331
BmsI GCATC 2 cut(s) 1504, 1799
BmuI ACTGGG 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 1704
BpmI CTGGAG 2 cut(s) 845, 1582
Bpu10I CCTNAGC 2 cut(s) 1393, 1398
Bpu1102I GCTNAGC 1 cut(s) 1416
BpuEI CTTGAG 1 cut(s) 438
Bsa29I ATCGAT 1 cut(s) 933
BsaBI GATNNNNATC 1 cut(s) 1809
BsaI GGTCTC 1 cut(s) 863
BsaJI CCNNGG 9 cut(s) 98, 579, 818, 862, 956, 1293, 1369, 1521, 1522
BsaWI WCCGGW 1 cut(s) 1693
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 850
Bse1I ACTGG 5 cut(s) 326, 519, 551, 898, 1599
Bse8I GATNNNNATC 1 cut(s) 1809
BseAI TCCGGA 1 cut(s) 1693
BseBI CCWGG 5 cut(s) 100, 317, 863, 1497, 1523
BseCI ATCGAT 1 cut(s) 933
BseDI CCNNGG 9 cut(s) 98, 579, 818, 862, 956, 1293, 1369, 1521, 1522
BseGI GGATG 9 cut(s) 92, 520, 902, 1207, 1234, 1519, 1592, 1712, 1845
BseJI GATNNNNATC 1 cut(s) 1809
BseLI CCNNNNNNNGG 2 cut(s) 322, 850
BseMII CTCAG 4 cut(s) 490, 740, 1299, 1866
BseNI ACTGG 5 cut(s) 326, 519, 551, 898, 1599
BsePI GCGCGC 1 cut(s) 9
BseRI GAGGAG 4 cut(s) 125, 1325, 1619, 1976
BseSI GKGCMC 1 cut(s) 607
BseXI GCAGC 4 cut(s) 391, 1407, 1705, 1936
BseYI CCCAGC 1 cut(s) 1460
BsgI GTGCAG 2 cut(s) 1132, 1781
Bsh1236I CGCG 4 cut(s) 9, 11, 18, 1530
BshFI GGCC 8 cut(s) 94, 103, 315, 605, 628, 955, 1570, 1967
BshVI ATCGAT 1 cut(s) 933
BsiHKAI GWGCWC 2 cut(s) 40, 144
BsiHKCI CYCGRG 3 cut(s) 137, 399, 1882
BsiSI CCGG 1 cut(s) 1694
BslFI GGGAC 3 cut(s) 722, 1157, 1539
BslI CCNNNNNNNGG 2 cut(s) 322, 850
BsmAI GTCTC 4 cut(s) 817, 863, 1087, 1550
BsmFI GGGAC 3 cut(s) 722, 1157, 1539
BsmI GAATGC 1 cut(s) 1121
BsnI GGCC 8 cut(s) 94, 103, 315, 605, 628, 955, 1570, 1967
Bso31I GGTCTC 1 cut(s) 863
BsoBI CYCGRG 3 cut(s) 137, 399, 1882
Bsp120I GGGCCC 1 cut(s) 603
Bsp1286I GDGCHC 3 cut(s) 40, 144, 607
Bsp13I TCCGGA 1 cut(s) 1693
Bsp1720I GCTNAGC 1 cut(s) 1416
Bsp19I CCATGG 2 cut(s) 579, 956
BspACI CCGC 5 cut(s) 72, 395, 1119, 1716, 1943
BspANI GGCC 8 cut(s) 94, 103, 315, 605, 628, 955, 1570, 1967
BspCNI CTCAG 4 cut(s) 489, 739, 1300, 1867
BspDI ATCGAT 1 cut(s) 933
BspEI TCCGGA 1 cut(s) 1693
BspFNI CGCG 4 cut(s) 9, 11, 18, 1530
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 3 cut(s) 605, 629, 1379
BspPI GGATC 6 cut(s) 491, 1322, 1411, 1685, 1818, 1906
BspTNI GGTCTC 1 cut(s) 863
BsrI ACTGG 5 cut(s) 326, 519, 551, 898, 1599
BssECI CCNNGG 9 cut(s) 98, 579, 818, 862, 956, 1293, 1369, 1521, 1522
BssHII GCGCGC 1 cut(s) 9
BssT1I CCWWGG 4 cut(s) 579, 818, 956, 1293
Bst2UI CCWGG 5 cut(s) 100, 317, 863, 1497, 1523
Bst4CI ACNGT 6 cut(s) 245, 292, 388, 466, 871, 1336
Bst6I CTCTTC 5 cut(s) 168, 306, 1026, 1882, 1981
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 7 cut(s) 476, 726, 1308, 1393, 1398, 1416, 1875
BstDSI CCRYGG 3 cut(s) 579, 956, 1369
BstF5I GGATG 9 cut(s) 92, 520, 902, 1207, 1234, 1519, 1592, 1712, 1845
BstFNI CGCG 4 cut(s) 9, 11, 18, 1530
BstH2I RGCGCY 1 cut(s) 1862
BstHHI GCGC 6 cut(s) 11, 13, 20, 1425, 1532, 1861
BstMAI GTCTC 4 cut(s) 817, 863, 1087, 1550
BstMWI GCNNNNNNNGC 7 cut(s) 15, 17, 100, 139, 1116, 1298, 1949
BstNI CCWGG 5 cut(s) 100, 317, 863, 1497, 1523
BstNSI RCATGY 1 cut(s) 428
BstSCI CCNGG 5 cut(s) 98, 315, 861, 1495, 1521
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 607
BstUI CGCG 4 cut(s) 9, 11, 18, 1530
BstV1I GCAGC 4 cut(s) 391, 1407, 1705, 1936
BstV2I GAAGAC 1 cut(s) 1704
BstX2I RGATCY 2 cut(s) 729, 795
BstXI CCANNNNNNTGG 1 cut(s) 600
BstYI RGATCY 2 cut(s) 729, 795
Bsu15I ATCGAT 1 cut(s) 933
BsuRI GGCC 8 cut(s) 94, 103, 315, 605, 628, 955, 1570, 1967
BsuTUI ATCGAT 1 cut(s) 933
BtgI CCRYGG 3 cut(s) 579, 956, 1369
BtgZI GCGATG 2 cut(s) 100, 215
BtsCI GGATG 9 cut(s) 92, 520, 902, 1207, 1234, 1519, 1592, 1712, 1845
BtsIMutI CAGTG 3 cut(s) 1332, 1606, 1783
Cac8I GCNNGC 1 cut(s) 11
CaiI CAGNNNCTG 1 cut(s) 1146
CciI TCATGA 1 cut(s) 211
CfoI GCGC 6 cut(s) 11, 13, 20, 1425, 1532, 1861
Cfr13I GGNCC 5 cut(s) 603, 604, 627, 1366, 1569
ClaI ATCGAT 1 cut(s) 933
CseI GACGC 2 cut(s) 1490, 1536
Csp6I GTAC 3 cut(s) 64, 392, 422
CspCI CAANNNNNGTGG 2 cut(s) 673, 708
CviAII CATG 8 cut(s) 212, 329, 425, 580, 957, 1225, 1939, 1998
CviQI GTAC 3 cut(s) 64, 392, 422
DdeI CTNAG 7 cut(s) 476, 726, 1308, 1393, 1398, 1416, 1875
DraI TTTAAA 1 cut(s) 1156
DrdI GACNNNNNNGTC 1 cut(s) 1229
DseDI GACNNNNNNGTC 1 cut(s) 1229
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 5 cut(s) 168, 306, 1026, 1882, 1981
EarI CTCTTC 5 cut(s) 168, 306, 1026, 1882, 1981
EciI GGCGGA 1 cut(s) 1958
Ecl136II GAGCTC 2 cut(s) 38, 142
Eco130I CCWWGG 4 cut(s) 579, 818, 956, 1293
Eco24I GRGCYC 3 cut(s) 40, 144, 607
Eco31I GGTCTC 1 cut(s) 863
Eco47I GGWCC 1 cut(s) 1366
Eco53kI GAGCTC 2 cut(s) 38, 142
Eco88I CYCGRG 3 cut(s) 137, 399, 1882
EcoICRI GAGCTC 2 cut(s) 38, 142
EcoO109I RGGNCCY 2 cut(s) 627, 1569
EcoRI GAATTC 1 cut(s) 911
EcoRII CCWGG 5 cut(s) 98, 315, 861, 1495, 1521
EcoT14I CCWWGG 4 cut(s) 579, 818, 956, 1293
EcoT38I GRGCYC 3 cut(s) 40, 144, 607
ErhI CCWWGG 4 cut(s) 579, 818, 956, 1293
FaeI CATG 8 cut(s) 215, 332, 428, 583, 960, 1228, 1942, 2001
FaqI GGGAC 3 cut(s) 722, 1157, 1539
FatI CATG 8 cut(s) 211, 328, 424, 579, 956, 1224, 1938, 1997
FauI CCCGC 1 cut(s) 1112
FbaI TGATCA 1 cut(s) 1930
Fnu4HI GCNGC 5 cut(s) 72, 405, 1421, 1719, 1950
FokI GGATG 9 cut(s) 99, 507, 909, 1214, 1241, 1526, 1579, 1699, 1852
FriOI GRGCYC 3 cut(s) 40, 144, 607
Fsp4HI GCNGC 5 cut(s) 72, 405, 1421, 1719, 1950
FspBI CTAG 7 cut(s) 33, 44, 338, 612, 819, 831, 1914
GlaI GCGC 6 cut(s) 10, 12, 19, 1424, 1531, 1860
GluI GCNGC 5 cut(s) 72, 405, 1421, 1719, 1950
GsaI CCCAGC 1 cut(s) 1464
GsuI CTGGAG 2 cut(s) 845, 1582
HaeII RGCGCY 1 cut(s) 1862
HaeIII GGCC 8 cut(s) 94, 103, 315, 605, 628, 955, 1570, 1967
HapII CCGG 1 cut(s) 1694
HgaI GACGC 2 cut(s) 1490, 1536
HhaI GCGC 6 cut(s) 11, 13, 20, 1425, 1532, 1861
Hin1II CATG 8 cut(s) 215, 332, 428, 583, 960, 1228, 1942, 2001
Hin6I GCGC 6 cut(s) 9, 11, 18, 1423, 1530, 1859
HinP1I GCGC 6 cut(s) 9, 11, 18, 1423, 1530, 1859
HincII GTYRAC 1 cut(s) 1318
HindII GTYRAC 1 cut(s) 1318
HindIII AAGCTT 1 cut(s) 875
HinfI GANTC 8 cut(s) 173, 218, 508, 810, 1235, 1448, 1558, 1892
HpaII CCGG 1 cut(s) 1694
HphI GGTGA 6 cut(s) 14, 229, 522, 1341, 1559, 1627
Hpy166II GTNNAC 2 cut(s) 1318, 1748
Hpy188I TCNGA 8 cut(s) 277, 373, 479, 729, 1240, 1408, 1633, 1815
Hpy188III TCNNGA 8 cut(s) 212, 505, 883, 1022, 1664, 1694, 1884, 1896
Hpy8I GTNNAC 2 cut(s) 1318, 1748
Hpy99I CGWCG 2 cut(s) 80, 567
HpyAV CCTTC 9 cut(s) 344, 440, 581, 618, 1155, 1190, 1258, 1429, 1848
HpyCH4III ACNGT 6 cut(s) 245, 292, 388, 466, 871, 1336
HpyCH4IV ACGT 4 cut(s) 204, 565, 1006, 1758
HpyCH4V TGCA 6 cut(s) 199, 840, 1149, 1517, 1762, 1871
HpyF10VI GCNNNNNNNGC 7 cut(s) 15, 17, 100, 139, 1116, 1298, 1949
HpyF3I CTNAG 7 cut(s) 476, 726, 1308, 1393, 1398, 1416, 1875
HpySE526I ACGT 4 cut(s) 204, 565, 1006, 1758
Hsp92II CATG 8 cut(s) 215, 332, 428, 583, 960, 1228, 1942, 2001
HspAI GCGC 6 cut(s) 9, 11, 18, 1423, 1530, 1859
Kpn2I TCCGGA 1 cut(s) 1693
Ksp22I TGATCA 1 cut(s) 1930
LmnI GCTCC 2 cut(s) 138, 147
Lsp1109I GCAGC 4 cut(s) 391, 1407, 1705, 1936
LweI GCATC 2 cut(s) 1504, 1799
MaeI CTAG 7 cut(s) 33, 44, 338, 612, 819, 831, 1914
MaeII ACGT 4 cut(s) 204, 565, 1006, 1758
MaeIII GTNAC 6 cut(s) 245, 558, 566, 679, 716, 1547
MflI RGATCY 2 cut(s) 729, 795
MhlI GDGCHC 3 cut(s) 40, 144, 607
MlyI GAGTC 4 cut(s) 502, 819, 1457, 1552
MroI TCCGGA 1 cut(s) 1693
MroXI GAANNNNTTC 1 cut(s) 1891
MseI TTAA 7 cut(s) 639, 753, 1155, 1491, 1503, 1509, 1845
MslI CAYNNNNRTG 2 cut(s) 293, 1354
MspA1I CMGCKG 1 cut(s) 1718
MspI CCGG 1 cut(s) 1694
MspR9I CCNGG 5 cut(s) 100, 317, 863, 1497, 1523
Mva1269I GAATGC 1 cut(s) 1121
MvaI CCWGG 5 cut(s) 100, 317, 863, 1497, 1523
MvnI CGCG 4 cut(s) 9, 11, 18, 1530
MwoI GCNNNNNNNGC 7 cut(s) 15, 17, 100, 139, 1116, 1298, 1949
NcoI CCATGG 2 cut(s) 579, 956
NlaIII CATG 8 cut(s) 215, 332, 428, 583, 960, 1228, 1942, 2001
NlaIV GGNNCC 3 cut(s) 605, 629, 1379
NmuCI GTSAC 1 cut(s) 1547
NspI RCATGY 1 cut(s) 428
PaeR7I CTCGAG 2 cut(s) 137, 399
PagI TCATGA 1 cut(s) 211
PasI CCCWGGG 1 cut(s) 1522
PauI GCGCGC 1 cut(s) 9
PciI ACATGT 1 cut(s) 424
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PctI GAATGC 1 cut(s) 1121
PdmI GAANNNNTTC 1 cut(s) 1891
PfeI GAWTC 4 cut(s) 173, 218, 1235, 1892
PkrI GCNGC 5 cut(s) 73, 406, 1422, 1720, 1951
PleI GAGTC 4 cut(s) 502, 818, 1456, 1552
PpsI GAGTC 4 cut(s) 502, 818, 1456, 1552
PscI ACATGT 1 cut(s) 424
PshBI ATTAAT 2 cut(s) 753, 1845
PsiI TTATAA 1 cut(s) 1128
Psp124BI GAGCTC 2 cut(s) 40, 144
Psp1406I AACGTT 1 cut(s) 204
Psp6I CCWGG 5 cut(s) 98, 315, 861, 1495, 1521
PspFI CCCAGC 1 cut(s) 1460
PspGI CCWGG 5 cut(s) 98, 315, 861, 1495, 1521
PspN4I GGNNCC 3 cut(s) 605, 629, 1379
PspOMI GGGCCC 1 cut(s) 603
PspPI GGNCC 5 cut(s) 603, 604, 627, 1366, 1569
PspXI VCTCGAGB 2 cut(s) 137, 399
PsrI GAACNNNNNNTAC 2 cut(s) 1370, 1402
PstNI CAGNNNCTG 1 cut(s) 1146
PsuI RGATCY 2 cut(s) 729, 795
PteI GCGCGC 1 cut(s) 9
RsaI GTAC 3 cut(s) 65, 393, 423
RsaNI GTAC 3 cut(s) 64, 392, 422
RseI CAYNNNNRTG 2 cut(s) 293, 1354
SacI GAGCTC 2 cut(s) 40, 144
SaqAI TTAA 7 cut(s) 639, 753, 1155, 1491, 1503, 1509, 1845
SatI GCNGC 5 cut(s) 72, 405, 1421, 1719, 1950
Sau96I GGNCC 5 cut(s) 603, 604, 627, 1366, 1569
SchI GAGTC 4 cut(s) 502, 819, 1457, 1552
ScrFI CCNGG 5 cut(s) 100, 317, 863, 1497, 1523
SduI GDGCHC 3 cut(s) 40, 144, 607
SfaNI GCATC 2 cut(s) 1504, 1799
SfcI CTRYAG 1 cut(s) 241
SfiI GGCCNNNNNGGCC 1 cut(s) 100
Sfr274I CTCGAG 2 cut(s) 137, 399
SinI GGWCC 1 cut(s) 1366
SlaI CTCGAG 2 cut(s) 137, 399
SmiMI CAYNNNNRTG 2 cut(s) 293, 1354
SmlI CTYRAG 3 cut(s) 137, 399, 453
SmoI CTYRAG 3 cut(s) 137, 399, 453
SsiI CCGC 5 cut(s) 72, 395, 1119, 1716, 1943
SspMI CTAG 7 cut(s) 33, 44, 338, 612, 819, 831, 1914
SstI GAGCTC 2 cut(s) 40, 144
StyD4I CCNGG 5 cut(s) 98, 315, 861, 1495, 1521
StyI CCWWGG 4 cut(s) 579, 818, 956, 1293
TaaI ACNGT 6 cut(s) 245, 292, 388, 466, 871, 1336
TaiI ACGT 4 cut(s) 207, 568, 1009, 1761
TaqI TCGA 8 cut(s) 138, 304, 400, 652, 711, 933, 945, 1233
TatI WGTACW 1 cut(s) 63
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 4 cut(s) 173, 218, 1235, 1892
Tru1I TTAA 7 cut(s) 639, 753, 1155, 1491, 1503, 1509, 1845
Tru9I TTAA 7 cut(s) 639, 753, 1155, 1491, 1503, 1509, 1845
TscAI CASTG 3 cut(s) 1339, 1606, 1783
TseFI GTSAC 1 cut(s) 1547
TseI GCWGC 4 cut(s) 404, 1420, 1718, 1949
Tsp45I GTSAC 1 cut(s) 1547
TspDTI ATGAA 8 cut(s) 17, 231, 317, 509, 681, 777, 1104, 1835
TspGWI ACGGA 2 cut(s) 99, 1358
TspRI CASTG 3 cut(s) 1339, 1606, 1783
VpaK11BI GGWCC 1 cut(s) 1366
VspI ATTAAT 2 cut(s) 753, 1845
XapI RAATTY 2 cut(s) 911, 1771
XceI RCATGY 1 cut(s) 428
XcmI CCANNNNNNNNNTGG 2 cut(s) 851, 890
XhoI CTCGAG 2 cut(s) 137, 399
XmaJI CCTAGG 1 cut(s) 818
XmnI GAANNNNTTC 1 cut(s) 1891
XspI CTAG 7 cut(s) 33, 44, 338, 612, 819, 831, 1914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.