Rmu_sc0002869.1_g000015

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002869.1
OG0000182
Physical Location & Seq
Reverse (-)
72359 .. 73473
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002869.1_g000015.1.cds

Sequence Viewer

Length: 1041 bp
atgaactggttggtcaataactggcttagctttgagttctctactgaggaggatgttgagttcattctttttaggaggccttggttcatccgtagtcggctatttggtctccgaagatggactccaagttttgatcctaccctagctcgcattgataagatcatagtctggacacgccttcctaatctgccaaggcatcattggaatactgaatttctcaaattcctagtcaggcatcttggtcaatttgtgatggcaaatgataataccatcaatgtaaataatgggaatgaacctccctttatagttctagtgtcgtatgaggtgatattcgaagtgtgctttcggtgtggacaacattgtaccaggttccattcttgtctgaataggatggtgaatgacaatttcttcatggtggagcagtttgataaggagcatgttgtttaccttcctgaaatggcagataatgagtacattaaacctttcctagctgatgatatctctatcattttccctcagcctctagtggcaaaccatttccctatgacttctgatatcccctctgagaatcaagatgatggctcgtggaaaattgtttccagaaaaggaaagggaaaggatgctaggttctcaaagatgggttcacttccctacaagtctacaagttttagcatccgaaacaatgctcttgttatcccaggtcgttcttttaaggatgcagctgctaggagtgatggaagccctgctatcccgacaaaaaagaaggacttaattgtgctctctgattcatcgcaagaggtggatcaatacttggatgctgaggaagctcctaagcagggagagattgatgccatgttagttgctaaggattcaactatgaatccaattactgatgttcctggccctagtacttctttgttttctagccctaagaaaagaagtaggcagatggtagaaatgatggaaacgagtgacagtaagagtctaggttctatgacccctaccgacaaagttgttaatgagattgctaagctggaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

346

Amino Acids

39.69

Weight (kDa)

6.04

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 659
AclWI GGATC 2 cut(s) 128, 810
AcsI RAATTY 2 cut(s) 212, 221
AfaI GTAC 3 cut(s) 364, 473, 910
AfiI CCNNNNNNNGG 1 cut(s) 836
AgsI TTSAA 1 cut(s) 873
AjnI CCWGG 3 cut(s) 365, 697, 898
AloI GAACNNNNNNTCC 4 cut(s) 44, 76, 611, 643
AluBI AGCT 6 cut(s) 30, 146, 491, 722, 827, 1033
AluI AGCT 6 cut(s) 30, 146, 491, 722, 827, 1033
Alw21I GWGCWC 1 cut(s) 780
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 2 cut(s) 128, 810
AoxI GGCC 2 cut(s) 77, 901
ApeKI GCWGC 2 cut(s) 719, 722
ApoI RAATTY 2 cut(s) 212, 221
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AspS9I GGNCC 1 cut(s) 902
AsuHPI GGTGA 2 cut(s) 337, 406
AsuII TTCGAA 1 cut(s) 333
BauI CACGAG 1 cut(s) 583
Bbv12I GWGCWC 1 cut(s) 780
BbvCI CCTCAGC 2 cut(s) 516, 819
BbvI GCAGC 2 cut(s) 709, 731
BccI CCATC 9 cut(s) 111, 247, 278, 385, 572, 631, 728, 943, 955
BciT130I CCWGG 3 cut(s) 367, 699, 900
BcoDI GTCTC 1 cut(s) 113
BisI GCNGC 2 cut(s) 720, 723
BlpI GCTNAGC 2 cut(s) 26, 1029
BlsI GCNGC 2 cut(s) 721, 724
BmcAI AGTACT 1 cut(s) 910
Bme1390I CCNGG 3 cut(s) 367, 699, 900
BmgT120I GGNCC 1 cut(s) 902
BmiI GGNNCC 1 cut(s) 371
BmrFI CCNGG 3 cut(s) 367, 699, 900
BmsI GCATC 7 cut(s) 205, 244, 610, 681, 706, 805, 838
Bpu10I CCTNAGC 4 cut(s) 516, 819, 831, 864
Bpu1102I GCTNAGC 2 cut(s) 26, 1029
Bpu14I TTCGAA 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 3 cut(s) 80, 191, 697
Bsc4I CCNNNNNNNGG 1 cut(s) 836
Bse1I ACTGG 2 cut(s) 11, 26
BseBI CCWGG 3 cut(s) 367, 699, 900
BseDI CCNNGG 3 cut(s) 80, 191, 697
BseGI GGATG 7 cut(s) 58, 87, 396, 625, 672, 721, 820
BseLI CCNNNNNNNGG 1 cut(s) 836
BseMII CTCAG 4 cut(s) 36, 530, 555, 810
BseNI ACTGG 2 cut(s) 11, 26
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 2 cut(s) 709, 731
BshFI GGCC 2 cut(s) 79, 903
BsiHKAI GWGCWC 1 cut(s) 780
BslI CCNNNNNNNGG 1 cut(s) 836
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 2 cut(s) 79, 903
Bso31I GGTCTC 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 780
Bsp143I GATC 3 cut(s) 133, 159, 802
Bsp1720I GCTNAGC 2 cut(s) 26, 1029
BspANI GGCC 2 cut(s) 79, 903
BspCNI CTCAG 4 cut(s) 37, 529, 556, 811
BspLI GGNNCC 1 cut(s) 371
BspPI GGATC 2 cut(s) 128, 810
BspT104I TTCGAA 1 cut(s) 333
BspTNI GGTCTC 1 cut(s) 113
BsrI ACTGG 2 cut(s) 11, 26
BssECI CCNNGG 3 cut(s) 80, 191, 697
BssMI GATC 3 cut(s) 133, 159, 802
BssSI CACGAG 1 cut(s) 583
BssT1I CCWWGG 2 cut(s) 80, 191
Bst2BI CACGAG 1 cut(s) 583
Bst2UI CCWGG 3 cut(s) 367, 699, 900
Bst4CI ACNGT 1 cut(s) 977
BstBI TTCGAA 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 9 cut(s) 26, 45, 516, 564, 819, 831, 864, 930, 1029
BstF5I GGATG 7 cut(s) 58, 87, 396, 625, 672, 721, 820
BstKTI GATC 3 cut(s) 136, 162, 805
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 3 cut(s) 133, 159, 802
BstMWI GCNNNNNNNGC 1 cut(s) 824
BstNI CCWGG 3 cut(s) 367, 699, 900
BstNSI RCATGY 1 cut(s) 440
BstSCI CCNGG 3 cut(s) 365, 697, 898
BstV1I GCAGC 2 cut(s) 709, 731
BsuRI GGCC 2 cut(s) 79, 903
BtgZI GCGATG 1 cut(s) 774
BtsCI GGATG 7 cut(s) 58, 87, 396, 625, 672, 721, 820
Cac8I GCNNGC 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 902
CsiI ACCWGGT 1 cut(s) 365
Csp6I GTAC 3 cut(s) 363, 472, 909
CviAII CATG 3 cut(s) 412, 437, 853
CviQI GTAC 3 cut(s) 363, 472, 909
DdeI CTNAG 9 cut(s) 26, 45, 516, 564, 819, 831, 864, 930, 1029
DpnI GATC 3 cut(s) 135, 161, 804
DpnII GATC 3 cut(s) 133, 159, 802
Eco130I CCWWGG 2 cut(s) 80, 191
Eco147I AGGCCT 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 113
Eco32I GATATC 2 cut(s) 499, 556
EcoRII CCWGG 3 cut(s) 365, 697, 898
EcoRV GATATC 2 cut(s) 499, 556
EcoT14I CCWWGG 2 cut(s) 80, 191
ErhI CCWWGG 2 cut(s) 80, 191
FaeI CATG 3 cut(s) 415, 440, 856
FaiI YATR 9 cut(s) 164, 305, 321, 413, 438, 545, 854, 878, 995
FalI AAGNNNNNCTT 2 cut(s) 752, 784
FatI CATG 3 cut(s) 411, 436, 852
FblI GTMKAC 1 cut(s) 659
Fnu4HI GCNGC 2 cut(s) 720, 723
FokI GGATG 7 cut(s) 65, 74, 403, 632, 659, 728, 827
Fsp4HI GCNGC 2 cut(s) 720, 723
GluI GCNGC 2 cut(s) 720, 723
HaeIII GGCC 2 cut(s) 79, 903
Hin1II CATG 3 cut(s) 415, 440, 856
HinfI GANTC 6 cut(s) 121, 568, 785, 869, 880, 982
HphI GGTGA 2 cut(s) 337, 406
Hpy166II GTNNAC 4 cut(s) 353, 445, 644, 660
Hpy188I TCNGA 6 cut(s) 113, 384, 553, 565, 677, 784
Hpy188III TCNNGA 5 cut(s) 169, 452, 572, 600, 751
Hpy8I GTNNAC 4 cut(s) 353, 445, 644, 660
HpyAV CCTTC 3 cut(s) 188, 458, 757
HpyCH4III ACNGT 1 cut(s) 977
HpyCH4V TGCA 1 cut(s) 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 824
HpyF3I CTNAG 9 cut(s) 26, 45, 516, 564, 819, 831, 864, 930, 1029
Hsp92II CATG 3 cut(s) 415, 440, 856
Kzo9I GATC 3 cut(s) 133, 159, 802
LmnI GCTCC 3 cut(s) 418, 433, 832
Lsp1109I GCAGC 2 cut(s) 709, 731
LweI GCATC 7 cut(s) 205, 244, 610, 681, 706, 805, 838
MabI ACCWGGT 1 cut(s) 365
MaeIII GTNAC 1 cut(s) 971
MalI GATC 3 cut(s) 135, 161, 804
MboI GATC 3 cut(s) 133, 159, 802
MboII GAAGA 2 cut(s) 126, 400
MhlI GDGCHC 1 cut(s) 780
MluCI AATT 7 cut(s) 212, 221, 245, 403, 591, 771, 885
MlyI GAGTC 2 cut(s) 115, 991
MseI TTAA 4 cut(s) 477, 711, 770, 1017
MspA1I CMGCKG 1 cut(s) 722
MspR9I CCNGG 3 cut(s) 367, 699, 900
MvaI CCWGG 3 cut(s) 367, 699, 900
MwoI GCNNNNNNNGC 1 cut(s) 824
NdeII GATC 3 cut(s) 133, 159, 802
NlaIII CATG 3 cut(s) 415, 440, 856
NlaIV GGNNCC 1 cut(s) 371
NmuCI GTSAC 1 cut(s) 971
NspI RCATGY 1 cut(s) 440
NspV TTCGAA 1 cut(s) 333
PceI AGGCCT 1 cut(s) 79
PfeI GAWTC 4 cut(s) 568, 785, 869, 880
PkrI GCNGC 2 cut(s) 721, 724
PleI GAGTC 2 cut(s) 115, 990
PpsI GAGTC 2 cut(s) 115, 990
Psp6I CCWGG 3 cut(s) 365, 697, 898
PspGI CCWGG 3 cut(s) 365, 697, 898
PspN4I GGNNCC 1 cut(s) 371
PspPI GGNCC 1 cut(s) 902
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 3 cut(s) 364, 473, 910
RsaNI GTAC 3 cut(s) 363, 472, 909
SaqAI TTAA 4 cut(s) 477, 711, 770, 1017
SatI GCNGC 2 cut(s) 720, 723
Sau3AI GATC 3 cut(s) 133, 159, 802
Sau96I GGNCC 1 cut(s) 902
ScaI AGTACT 1 cut(s) 910
SchI GAGTC 2 cut(s) 115, 991
ScrFI CCNGG 3 cut(s) 367, 699, 900
SduI GDGCHC 1 cut(s) 780
SexAI ACCWGGT 1 cut(s) 365
SfaNI GCATC 7 cut(s) 205, 244, 610, 681, 706, 805, 838
SfuI TTCGAA 1 cut(s) 333
Sse9I AATT 7 cut(s) 212, 221, 245, 403, 591, 771, 885
SseBI AGGCCT 1 cut(s) 79
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 3 cut(s) 365, 697, 898
StyI CCWWGG 2 cut(s) 80, 191
TaaI ACNGT 1 cut(s) 977
TaqI TCGA 1 cut(s) 333
TasI AATT 7 cut(s) 212, 221, 245, 403, 591, 771, 885
TatI WGTACW 2 cut(s) 471, 908
TfiI GAWTC 4 cut(s) 568, 785, 869, 880
Tru1I TTAA 4 cut(s) 477, 711, 770, 1017
Tru9I TTAA 4 cut(s) 477, 711, 770, 1017
TseFI GTSAC 1 cut(s) 971
TseI GCWGC 2 cut(s) 719, 722
Tsp45I GTSAC 1 cut(s) 971
TspDTI ATGAA 7 cut(s) 17, 52, 76, 306, 400, 777, 893
TspGWI ACGGA 1 cut(s) 80
XapI RAATTY 2 cut(s) 212, 221
XceI RCATGY 1 cut(s) 440
XcmI CCANNNNNNNNNTGG 1 cut(s) 198
XmiI GTMKAC 1 cut(s) 659
ZrmI AGTACT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.