Rh1AG021700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000182
Physical Location & Seq
Forward (+)
3977234 .. 3984096
6863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG021700.1

Sequence Viewer

Length: 402 bp
ATGGCCAAGTATGAGAATATTCAAAGTCTGTTTGCAGAACACTTTTCCTTGGTCTTTTCTCAACCTATTGCTGCTCCAACCCCTATAGAAGGTGATAACTCTACTGATGGGGCATCGTGGAAAATCGTGTCCCGAAAAGGGAAGGGTAAAGGTTTCACTTATCCAAAACAGGGGACTATCCCCAATAATCAAAAAGCTATGTTAAAGCCGGGCAAGTCTTTCAAGGAGGCAGTTGCAAATAATGGGGCTGGGCCCTCTGGAGTTCCTAAGAATAAGGAGGTGCAGGCAACTGGAGAAGAACCCATTTTCGTTGAAGACGATCCTCTTGATTCCGAGGGCGTTGATGATGTCAAAGACCCACCGGTGGAATATGTTAATGACAATGCAGTCAGGCTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.3

Weight (kDa)

5.01

Isoelectric Point (pI)

29.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 386
AclWI GGATC 1 cut(s) 314
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 4 cut(s) 89, 138, 170, 364
AgeI ACCGGT 1 cut(s) 361
AgsI TTSAA 3 cut(s) 23, 223, 314
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
AlwI GGATC 1 cut(s) 314
AoxI GGCC 2 cut(s) 3, 251
ApaI GGGCCC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 71
AsiGI ACCGGT 1 cut(s) 361
AspS9I GGNCC 2 cut(s) 251, 252
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 104
BaeGI GKGCMC 1 cut(s) 255
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 101
BcnI CCSGG 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 251, 252
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 2 cut(s) 279, 312
BpuMI CCSGG 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 48, 333
BsaWI WCCGGW 1 cut(s) 361
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 138, 170, 364
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 1 cut(s) 295
BseDI CCNNGG 2 cut(s) 48, 333
BseLI CCNNNNNNNGG 4 cut(s) 89, 138, 170, 364
BseNI ACTGG 1 cut(s) 295
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 302
BshFI GGCC 2 cut(s) 5, 253
BshTI ACCGGT 1 cut(s) 361
BsiSI CCGG 2 cut(s) 209, 362
BslFI GGGAC 2 cut(s) 115, 187
BslI CCNNNNNNNGG 4 cut(s) 89, 138, 170, 364
BsmFI GGGAC 2 cut(s) 115, 187
BsnI GGCC 2 cut(s) 5, 253
Bsp120I GGGCCC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 319
BspANI GGCC 2 cut(s) 5, 253
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 1 cut(s) 314
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 1 cut(s) 295
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 2 cut(s) 48, 333
BssMI GATC 1 cut(s) 319
BssT1I CCWWGG 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 1 cut(s) 267
BstENI CCTNNNNNAGG 1 cut(s) 87
BstKTI GATC 1 cut(s) 322
BstMBI GATC 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 321
BsuRI GGCC 2 cut(s) 5, 253
Cac8I GCNNGC 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 251, 252
CspAI ACCGGT 1 cut(s) 361
CviJI RGCY 6 cut(s) 5, 197, 208, 248, 253, 394
CviKI_1 RGCY 6 cut(s) 5, 197, 208, 248, 253, 394
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
DrdI GACNNNNNNGTC 1 cut(s) 386
DseDI GACNNNNNNGTC 1 cut(s) 386
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 255
EcoNI CCTNNNNNAGG 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 48
FaiI YATR 4 cut(s) 12, 86, 200, 372
FaqI GGGAC 2 cut(s) 115, 187
Fnu4HI GCNGC 1 cut(s) 72
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 252
GsuI CTGGAG 2 cut(s) 279, 312
HaeIII GGCC 2 cut(s) 5, 253
HapII CCGG 2 cut(s) 209, 362
HinfI GANTC 1 cut(s) 329
HpaII CCGG 2 cut(s) 209, 362
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 3 cut(s) 132, 258, 326
HpyAV CCTTC 2 cut(s) 83, 136
HpyCH4V TGCA 4 cut(s) 35, 236, 283, 386
HpyF3I CTNAG 1 cut(s) 267
Kzo9I GATC 1 cut(s) 319
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 9 cut(s) 155, 222, 234, 243, 269, 276, 375, 376, 380
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 122
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 2 cut(s) 308, 326
MhlI GDGCHC 1 cut(s) 255
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 5 cut(s) 220, 265, 271, 328, 333
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 203, 375
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 209, 362
MspR9I CCNGG 1 cut(s) 210
NciI CCSGG 1 cut(s) 210
NdeII GATC 1 cut(s) 319
NlaIV GGNNCC 1 cut(s) 253
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PfeI GAWTC 1 cut(s) 329
PinAI ACCGGT 1 cut(s) 361
PkrI GCNGC 1 cut(s) 73
PspFI CCCAGC 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 253
PspOMI GGGCCC 1 cut(s) 251
PspPI GGNCC 2 cut(s) 251, 252
SaqAI TTAA 2 cut(s) 203, 375
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 2 cut(s) 251, 252
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 255
SetI ASST 5 cut(s) 67, 94, 154, 199, 282
SfaNI GCATC 1 cut(s) 122
SfcI CTRYAG 1 cut(s) 84
SgrAI CRCCGGYG 1 cut(s) 361
SspI AATATT 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 1 cut(s) 48
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 2 cut(s) 203, 375
Tru9I TTAA 2 cut(s) 203, 375
TseI GCWGC 1 cut(s) 71
XagI CCTNNNNNAGG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.