Rroxscaffold_7G00209090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000182
Physical Location & Seq
Forward (+)
59356313 .. 59357057
745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00209090.1

Sequence Viewer

Length: 426 bp
ATGGACCCCGAGTTTGATGCCACAACCACTGTTCTCGACCGCTTAATGGTCCGGATTAGACTACCCAATTTTCCTCTACCTCATTGGAATGAGTCCTCCCTCGGGCACCTAGGACGGTATCTTGGTAGTTATGTTCGGTTGATGAGCTCACCCTATCGGAAAGAAAACAATGTTTGCAAAAATTATGGAACCAATATGGGAACCTTTTCTGCAAACGCCGGAGATCGGGATCCGAAACAAGACCATGGTTCTTGGAAGGTCCCAATCTCGCCAAGCCTAAAGAATGCGGCTTACAACAAGGTCCCAATACTACCAAGCCAAAAGGATCAAATGCATGTCGTTCTCCTGGGTGTCTCCTTTAAAGATGTTGTTGATGGTACTTCGGCTGCTGCGGCTGTTGTACCCGTTCTTGCTACGACCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.53

Weight (kDa)

9.3

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 105
AccIII TCCGGA 1 cut(s) 51
AciI CCGC 3 cut(s) 40, 287, 392
AclWI GGATC 3 cut(s) 224, 237, 333
AfaI GTAC 2 cut(s) 379, 402
AfiI CCNNNNNNNGG 3 cut(s) 46, 102, 225
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 358
AlwI GGATC 3 cut(s) 224, 237, 333
Ama87I CYCGRG 2 cut(s) 8, 101
Aor13HI TCCGGA 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 386, 389
ArsI GACNNNNNNTTYG 1 cut(s) 28
Asp700I GAANNNNTTC 1 cut(s) 205
AspA2I CCTAGG 1 cut(s) 109
AspS9I GGNCC 4 cut(s) 4, 49, 259, 301
AsuHPI GGTGA 1 cut(s) 141
AvaI CYCGRG 2 cut(s) 8, 101
AvaII GGWCC 4 cut(s) 4, 49, 259, 301
AvrII CCTAGG 1 cut(s) 109
BaeGI GKGCMC 1 cut(s) 108
BamHI GGATCC 1 cut(s) 229
BanI GGYRCC 1 cut(s) 105
BanII GRGCYC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 373, 376
BccI CCATC 1 cut(s) 368
BcgI CGANNNNNNTGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 1 cut(s) 110
BisI GCNGC 4 cut(s) 288, 387, 390, 393
BlnI CCTAGG 1 cut(s) 109
BlsI GCNGC 4 cut(s) 289, 388, 391, 394
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 4 cut(s) 4, 49, 259, 301
BmeT110I CYCGRG 2 cut(s) 8, 101
BmgT120I GGNCC 4 cut(s) 4, 49, 259, 301
BmiI GGNNCC 7 cut(s) 6, 107, 190, 202, 231, 261, 303
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 1 cut(s) 7
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 4 cut(s) 100, 109, 244, 346
BsaWI WCCGGW 1 cut(s) 51
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 102, 225
Bse8I GATNNNNATC 1 cut(s) 228
BseAI TCCGGA 1 cut(s) 51
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 4 cut(s) 100, 109, 244, 346
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 3 cut(s) 46, 102, 225
BseSI GKGCMC 1 cut(s) 108
BseXI GCAGC 2 cut(s) 373, 376
Bsh1285I CGRYCG 1 cut(s) 40
BshNI GGYRCC 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 149
BsiHKCI CYCGRG 2 cut(s) 8, 101
BsiSI CCGG 2 cut(s) 52, 219
BslFI GGGAC 2 cut(s) 245, 287
BslI CCNNNNNNNGG 3 cut(s) 46, 102, 225
BsmAI GTCTC 1 cut(s) 358
BsmFI GGGAC 2 cut(s) 245, 287
BsmI GAATGC 1 cut(s) 289
BsoBI CYCGRG 2 cut(s) 8, 101
Bsp1286I GDGCHC 2 cut(s) 108, 149
Bsp13I TCCGGA 1 cut(s) 51
Bsp143I GATC 3 cut(s) 223, 229, 325
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 3 cut(s) 40, 287, 392
BspEI TCCGGA 1 cut(s) 51
BspLI GGNNCC 7 cut(s) 6, 107, 190, 202, 231, 261, 303
BspPI GGATC 3 cut(s) 224, 237, 333
BspT107I GGYRCC 1 cut(s) 105
BssECI CCNNGG 4 cut(s) 100, 109, 244, 346
BssMI GATC 3 cut(s) 223, 229, 325
BssT1I CCWWGG 2 cut(s) 109, 244
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 2 cut(s) 31, 117
BstDSI CCRYGG 1 cut(s) 244
BstKTI GATC 3 cut(s) 226, 232, 328
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 3 cut(s) 223, 229, 325
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNI CCWGG 1 cut(s) 347
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 345
BstSLI GKGCMC 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 373, 376
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BtgI CCRYGG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 27
Cfr13I GGNCC 4 cut(s) 4, 49, 259, 301
Csp6I GTAC 2 cut(s) 378, 401
CviAII CATG 2 cut(s) 245, 335
CviJI RGCY 6 cut(s) 147, 276, 290, 318, 386, 395
CviKI_1 RGCY 6 cut(s) 147, 276, 290, 318, 386, 395
CviQI GTAC 2 cut(s) 378, 401
DpnI GATC 3 cut(s) 225, 231, 327
DpnII GATC 3 cut(s) 223, 229, 325
DraI TTTAAA 1 cut(s) 361
Ecl136II GAGCTC 1 cut(s) 147
Eco130I CCWWGG 2 cut(s) 109, 244
Eco24I GRGCYC 1 cut(s) 149
Eco47I GGWCC 4 cut(s) 4, 49, 259, 301
Eco53kI GAGCTC 1 cut(s) 147
Eco88I CYCGRG 2 cut(s) 8, 101
EcoICRI GAGCTC 1 cut(s) 147
EcoO109I RGGNCCY 2 cut(s) 259, 301
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 2 cut(s) 109, 244
EcoT22I ATGCAT 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 149
ErhI CCWWGG 2 cut(s) 109, 244
FaeI CATG 2 cut(s) 248, 338
FaiI YATR 5 cut(s) 132, 186, 197, 246, 336
FaqI GGGAC 2 cut(s) 245, 287
FatI CATG 2 cut(s) 244, 334
Fnu4HI GCNGC 4 cut(s) 288, 387, 390, 393
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 4 cut(s) 288, 387, 390, 393
FspBI CTAG 1 cut(s) 110
GluI GCNGC 4 cut(s) 288, 387, 390, 393
HapII CCGG 2 cut(s) 52, 219
Hin1II CATG 2 cut(s) 248, 338
HinfI GANTC 1 cut(s) 92
HpaII CCGG 2 cut(s) 52, 219
HphI GGTGA 1 cut(s) 141
Hpy188I TCNGA 2 cut(s) 159, 234
Hpy188III TCNNGA 3 cut(s) 35, 52, 227
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 2 cut(s) 31, 117
HpyCH4V TGCA 3 cut(s) 177, 212, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
Hsp92II CATG 2 cut(s) 248, 338
Kpn2I TCCGGA 1 cut(s) 51
Kzo9I GATC 3 cut(s) 223, 229, 325
LpnPI CCDG 4 cut(s) 65, 232, 332, 359
Lsp1109I GCAGC 2 cut(s) 373, 376
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 110
MalI GATC 3 cut(s) 225, 231, 327
MboI GATC 3 cut(s) 223, 229, 325
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 2 cut(s) 108, 149
MluCI AATT 2 cut(s) 67, 181
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 4 cut(s) 84, 90, 106, 110
Mph1103I ATGCAT 1 cut(s) 336
MroI TCCGGA 1 cut(s) 51
MroXI GAANNNNTTC 1 cut(s) 205
MseI TTAA 2 cut(s) 44, 360
MslI CAYNNNNRTG 1 cut(s) 87
MspI CCGG 2 cut(s) 52, 219
MspR9I CCNGG 1 cut(s) 347
Mva1269I GAATGC 1 cut(s) 289
MvaI CCWGG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 392
NcoI CCATGG 1 cut(s) 244
NdeII GATC 3 cut(s) 223, 229, 325
NlaIII CATG 2 cut(s) 248, 338
NlaIV GGNNCC 7 cut(s) 6, 107, 190, 202, 231, 261, 303
NsiI ATGCAT 1 cut(s) 336
NspI RCATGY 1 cut(s) 338
PctI GAATGC 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 205
PkrI GCNGC 4 cut(s) 289, 388, 391, 394
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PpuMI RGGWCCY 2 cut(s) 259, 301
Psp124BI GAGCTC 1 cut(s) 149
Psp5II RGGWCCY 2 cut(s) 259, 301
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 7 cut(s) 6, 107, 190, 202, 231, 261, 303
PspPI GGNCC 4 cut(s) 4, 49, 259, 301
PspPPI RGGWCCY 2 cut(s) 259, 301
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 2 cut(s) 379, 402
RsaNI GTAC 2 cut(s) 378, 401
RseI CAYNNNNRTG 1 cut(s) 87
SacI GAGCTC 1 cut(s) 149
SaqAI TTAA 2 cut(s) 44, 360
SatI GCNGC 4 cut(s) 288, 387, 390, 393
Sau3AI GATC 3 cut(s) 223, 229, 325
Sau96I GGNCC 4 cut(s) 4, 49, 259, 301
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 2 cut(s) 108, 149
SetI ASST 6 cut(s) 82, 111, 149, 206, 261, 303
SfaNI GCATC 1 cut(s) 7
SinI GGWCC 4 cut(s) 4, 49, 259, 301
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 2 cut(s) 67, 181
SsiI CCGC 3 cut(s) 40, 287, 392
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 2 cut(s) 109, 244
TaaI ACNGT 2 cut(s) 31, 117
TaqI TCGA 1 cut(s) 36
TasI AATT 2 cut(s) 67, 181
TauI GCSGC 2 cut(s) 290, 395
Tru1I TTAA 2 cut(s) 44, 360
Tru9I TTAA 2 cut(s) 44, 360
TscAI CASTG 1 cut(s) 34
TseI GCWGC 2 cut(s) 386, 389
TspRI CASTG 1 cut(s) 34
VpaK11BI GGWCC 4 cut(s) 4, 49, 259, 301
XceI RCATGY 1 cut(s) 338
XmaJI CCTAGG 1 cut(s) 109
XmnI GAANNNNTTC 1 cut(s) 205
XspI CTAG 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.