Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 68 - 143 | 3.5e-12 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 824 |
| AciI | CCGC | 3 cut(s) | 147, 176, 265 |
| AclWI | GGATC | 3 cut(s) | 364, 377, 1167 |
| AcoI | YGGCCR | 2 cut(s) | 834, 843 |
| AfaI | GTAC | 1 cut(s) | 480 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 182, 688, 932, 981, 1013, 1193 |
| AgeI | ACCGGT | 1 cut(s) | 182 |
| AgsI | TTSAA | 7 cut(s) | 194, 461, 781, 803, 932, 1066, 1235 |
| AjnI | CCWGG | 1 cut(s) | 891 |
| AluBI | AGCT | 5 cut(s) | 26, 226, 248, 1040, 1223 |
| AluI | AGCT | 5 cut(s) | 26, 226, 248, 1040, 1223 |
| Alw26I | GTCTC | 1 cut(s) | 697 |
| AlwI | GGATC | 3 cut(s) | 364, 377, 1167 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 871 |
| AoxI | GGCC | 4 cut(s) | 834, 843, 1049, 1094 |
| ApeKI | GCWGC | 3 cut(s) | 267, 443, 1223 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 633, 665 |
| AsiGI | ACCGGT | 1 cut(s) | 182 |
| AspLEI | GCGC | 1 cut(s) | 1247 |
| AspS9I | GGNCC | 4 cut(s) | 282, 607, 649, 1094 |
| AsuC2I | CCSGG | 1 cut(s) | 1053 |
| AsuHPI | GGTGA | 4 cut(s) | 134, 165, 947, 1229 |
| AvaII | GGWCC | 3 cut(s) | 282, 607, 649 |
| BalI | TGGCCA | 1 cut(s) | 845 |
| BamHI | GGATCC | 1 cut(s) | 369 |
| BbsI | GAAGAC | 1 cut(s) | 441 |
| BbvI | GCAGC | 3 cut(s) | 254, 430, 1210 |
| BccI | CCATC | 4 cut(s) | 417, 828, 944, 1195 |
| BciT130I | CCWGG | 1 cut(s) | 893 |
| BciVI | GTATCC | 1 cut(s) | 136 |
| BcnI | CCSGG | 1 cut(s) | 1053 |
| BcoDI | GTCTC | 1 cut(s) | 697 |
| BfuI | GTATCC | 1 cut(s) | 136 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 842 |
| BisI | GCNGC | 3 cut(s) | 268, 444, 1224 |
| BlsI | GCNGC | 3 cut(s) | 269, 445, 1225 |
| Bme1390I | CCNGG | 2 cut(s) | 893, 1053 |
| Bme18I | GGWCC | 3 cut(s) | 282, 607, 649 |
| BmgT120I | GGNCC | 4 cut(s) | 282, 607, 649, 1094 |
| BmiI | GGNNCC | 3 cut(s) | 371, 608, 1182 |
| BmrFI | CCNGG | 2 cut(s) | 893, 1053 |
| BmsI | GCATC | 3 cut(s) | 430, 965, 1162 |
| BpiI | GAAGAC | 1 cut(s) | 441 |
| BpmI | CTGGAG | 1 cut(s) | 1122 |
| BpuEI | CTTGAG | 1 cut(s) | 12 |
| BpuMI | CCSGG | 1 cut(s) | 1053 |
| BsaI | GGTCTC | 1 cut(s) | 697 |
| BsaJI | CCNNGG | 5 cut(s) | 386, 891, 1176, 1192, 1213 |
| BsaWI | WCCGGW | 2 cut(s) | 109, 182 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 182, 688, 932, 981, 1013, 1193 |
| Bse118I | RCCGGY | 1 cut(s) | 182 |
| Bse1I | ACTGG | 3 cut(s) | 332, 512, 824 |
| Bse3DI | GCAATG | 1 cut(s) | 277 |
| BseBI | CCWGG | 1 cut(s) | 893 |
| BseDI | CCNNGG | 5 cut(s) | 386, 891, 1176, 1192, 1213 |
| BseGI | GGATG | 1 cut(s) | 820 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 182, 688, 932, 981, 1013, 1193 |
| BseMI | GCAATG | 1 cut(s) | 277 |
| BseMII | CTCAG | 1 cut(s) | 345 |
| BseNI | ACTGG | 3 cut(s) | 332, 512, 824 |
| BseRI | GAGGAG | 5 cut(s) | 31, 34, 1133, 1176, 1193 |
| BseX3I | CGGCCG | 1 cut(s) | 834 |
| BseXI | GCAGC | 3 cut(s) | 254, 430, 1210 |
| BseYI | CCCAGC | 2 cut(s) | 1091, 1226 |
| Bsh1285I | CGRYCG | 2 cut(s) | 56, 837 |
| BshFI | GGCC | 4 cut(s) | 836, 845, 1051, 1096 |
| BshTI | ACCGGT | 1 cut(s) | 182 |
| BsiEI | CGRYCG | 2 cut(s) | 56, 837 |
| BsiSI | CCGG | 4 cut(s) | 110, 183, 833, 1052 |
| BslFI | GGGAC | 3 cut(s) | 958, 1007, 1030 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 182, 688, 932, 981, 1013, 1193 |
| BsmAI | GTCTC | 1 cut(s) | 697 |
| BsmFI | GGGAC | 3 cut(s) | 958, 1007, 1030 |
| BsmI | GAATGC | 1 cut(s) | 517 |
| BsnI | GGCC | 4 cut(s) | 836, 845, 1051, 1096 |
| Bso31I | GGTCTC | 1 cut(s) | 697 |
| Bsp143I | GATC | 3 cut(s) | 369, 880, 1159 |
| BspACI | CCGC | 3 cut(s) | 147, 176, 265 |
| BspANI | GGCC | 4 cut(s) | 836, 845, 1051, 1096 |
| BspCNI | CTCAG | 1 cut(s) | 346 |
| BspLI | GGNNCC | 3 cut(s) | 371, 608, 1182 |
| BspPI | GGATC | 3 cut(s) | 364, 377, 1167 |
| BspTNI | GGTCTC | 1 cut(s) | 697 |
| BsrDI | GCAATG | 1 cut(s) | 277 |
| BsrFI | RCCGGY | 1 cut(s) | 182 |
| BsrI | ACTGG | 3 cut(s) | 332, 512, 824 |
| BssAI | RCCGGY | 1 cut(s) | 182 |
| BssECI | CCNNGG | 5 cut(s) | 386, 891, 1176, 1192, 1213 |
| BssMI | GATC | 3 cut(s) | 369, 880, 1159 |
| BssT1I | CCWWGG | 3 cut(s) | 386, 1192, 1213 |
| Bst2UI | CCWGG | 1 cut(s) | 893 |
| Bst4CI | ACNGT | 5 cut(s) | 57, 212, 434, 649, 1021 |
| Bst6I | CTCTTC | 1 cut(s) | 1264 |
| BstC8I | GCNNGC | 1 cut(s) | 224 |
| BstDEI | CTNAG | 2 cut(s) | 354, 1110 |
| BstEII | GGTNACC | 1 cut(s) | 671 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 930, 1191 |
| BstF5I | GGATG | 1 cut(s) | 820 |
| BstHHI | GCGC | 1 cut(s) | 1247 |
| BstKTI | GATC | 3 cut(s) | 372, 883, 1162 |
| BstMAI | GTCTC | 1 cut(s) | 697 |
| BstMBI | GATC | 3 cut(s) | 369, 880, 1159 |
| BstMCI | CGRYCG | 2 cut(s) | 56, 837 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 175, 842, 953 |
| BstNI | CCWGG | 1 cut(s) | 893 |
| BstNSI | RCATGY | 1 cut(s) | 598 |
| BstPI | GGTNACC | 1 cut(s) | 671 |
| BstSCI | CCNGG | 2 cut(s) | 891, 1051 |
| BstV1I | GCAGC | 3 cut(s) | 254, 430, 1210 |
| BstV2I | GAAGAC | 1 cut(s) | 441 |
| BstX2I | RGATCY | 1 cut(s) | 369 |
| BstYI | RGATCY | 1 cut(s) | 369 |
| BstZI | CGGCCG | 1 cut(s) | 834 |
| BsuI | GTATCC | 1 cut(s) | 136 |
| BsuRI | GGCC | 4 cut(s) | 836, 845, 1051, 1096 |
| BtsCI | GGATG | 1 cut(s) | 820 |
| BtsIMutI | CAGTG | 3 cut(s) | 208, 325, 352 |
| Cac8I | GCNNGC | 1 cut(s) | 224 |
| CaiI | CAGNNNCTG | 1 cut(s) | 871 |
| CfoI | GCGC | 1 cut(s) | 1247 |
| Cfr10I | RCCGGY | 1 cut(s) | 182 |
| Cfr13I | GGNCC | 4 cut(s) | 282, 607, 649, 1094 |
| CseI | GACGC | 2 cut(s) | 110, 435 |
| Csp6I | GTAC | 1 cut(s) | 479 |
| CspAI | ACCGGT | 1 cut(s) | 182 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 910, 945 |
| CviAII | CATG | 2 cut(s) | 137, 595 |
| CviQI | GTAC | 1 cut(s) | 479 |
| DdeI | CTNAG | 2 cut(s) | 354, 1110 |
| DpnI | GATC | 3 cut(s) | 371, 882, 1161 |
| DpnII | GATC | 3 cut(s) | 369, 880, 1159 |
| DraI | TTTAAA | 2 cut(s) | 67, 772 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 824 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 824 |
| EaeI | YGGCCR | 2 cut(s) | 834, 843 |
| EagI | CGGCCG | 1 cut(s) | 834 |
| Eam1104I | CTCTTC | 1 cut(s) | 1264 |
| EarI | CTCTTC | 1 cut(s) | 1264 |
| EclXI | CGGCCG | 1 cut(s) | 834 |
| Eco130I | CCWWGG | 3 cut(s) | 386, 1192, 1213 |
| Eco31I | GGTCTC | 1 cut(s) | 697 |
| Eco47I | GGWCC | 3 cut(s) | 282, 607, 649 |
| Eco52I | CGGCCG | 1 cut(s) | 834 |
| Eco91I | GGTNACC | 1 cut(s) | 671 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 930, 1191 |
| EcoO109I | RGGNCCY | 1 cut(s) | 607 |
| EcoO65I | GGTNACC | 1 cut(s) | 671 |
| EcoRII | CCWGG | 1 cut(s) | 891 |
| EcoT14I | CCWWGG | 3 cut(s) | 386, 1192, 1213 |
| ErhI | CCWWGG | 3 cut(s) | 386, 1192, 1213 |
| FaeI | CATG | 2 cut(s) | 140, 598 |
| FaqI | GGGAC | 3 cut(s) | 958, 1007, 1030 |
| FatI | CATG | 2 cut(s) | 136, 594 |
| Fnu4HI | GCNGC | 3 cut(s) | 268, 444, 1224 |
| FokI | GGATG | 1 cut(s) | 807 |
| Fsp4HI | GCNGC | 3 cut(s) | 268, 444, 1224 |
| GlaI | GCGC | 1 cut(s) | 1246 |
| GluI | GCNGC | 3 cut(s) | 268, 444, 1224 |
| GsaI | CCCAGC | 2 cut(s) | 1095, 1230 |
| GsuI | CTGGAG | 1 cut(s) | 1122 |
| HaeIII | GGCC | 4 cut(s) | 836, 845, 1051, 1096 |
| HapII | CCGG | 4 cut(s) | 110, 183, 833, 1052 |
| HgaI | GACGC | 2 cut(s) | 110, 435 |
| HhaI | GCGC | 1 cut(s) | 1247 |
| Hin1II | CATG | 2 cut(s) | 140, 598 |
| Hin6I | GCGC | 1 cut(s) | 1245 |
| HinP1I | GCGC | 1 cut(s) | 1245 |
| HincII | GTYRAC | 3 cut(s) | 115, 262, 658 |
| HindII | GTYRAC | 3 cut(s) | 115, 262, 658 |
| HinfI | GANTC | 4 cut(s) | 483, 490, 868, 1142 |
| HpaII | CCGG | 4 cut(s) | 110, 183, 833, 1052 |
| HphI | GGTGA | 4 cut(s) | 134, 165, 947, 1229 |
| Hpy166II | GTNNAC | 3 cut(s) | 115, 262, 658 |
| Hpy188I | TCNGA | 5 cut(s) | 538, 867, 1035, 1138, 1264 |
| Hpy188III | TCNNGA | 6 cut(s) | 48, 290, 487, 610, 975, 1101 |
| Hpy8I | GTNNAC | 3 cut(s) | 115, 262, 658 |
| Hpy99I | CGWCG | 1 cut(s) | 54 |
| HpyAV | CCTTC | 6 cut(s) | 142, 180, 287, 926, 979, 1107 |
| HpyCH4III | ACNGT | 5 cut(s) | 57, 212, 434, 649, 1021 |
| HpyCH4V | TGCA | 6 cut(s) | 270, 365, 594, 602, 878, 1079 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 175, 842, 953 |
| HpyF3I | CTNAG | 2 cut(s) | 354, 1110 |
| Hsp92II | CATG | 2 cut(s) | 140, 598 |
| HspAI | GCGC | 1 cut(s) | 1245 |
| Kzo9I | GATC | 3 cut(s) | 369, 880, 1159 |
| LmnI | GCTCC | 3 cut(s) | 922, 1180, 1215 |
| Lsp1109I | GCAGC | 3 cut(s) | 254, 430, 1210 |
| LweI | GCATC | 3 cut(s) | 430, 965, 1162 |
| MaeIII | GTNAC | 5 cut(s) | 91, 349, 671, 746, 1146 |
| MalI | GATC | 3 cut(s) | 371, 882, 1161 |
| MboI | GATC | 3 cut(s) | 369, 880, 1159 |
| MboII | GAAGA | 4 cut(s) | 400, 441, 485, 1251 |
| MflI | RGATCY | 1 cut(s) | 369 |
| MlsI | TGGCCA | 1 cut(s) | 845 |
| MluCI | AATT | 5 cut(s) | 252, 543, 773, 787, 861 |
| MluNI | TGGCCA | 1 cut(s) | 845 |
| MlyI | GAGTC | 3 cut(s) | 477, 877, 1136 |
| Mox20I | TGGCCA | 1 cut(s) | 845 |
| MscI | TGGCCA | 1 cut(s) | 845 |
| MseI | TTAA | 5 cut(s) | 66, 524, 558, 771, 1046 |
| Msp20I | TGGCCA | 1 cut(s) | 845 |
| MspA1I | CMGCKG | 2 cut(s) | 248, 267 |
| MspI | CCGG | 4 cut(s) | 110, 183, 833, 1052 |
| MspR9I | CCNGG | 2 cut(s) | 893, 1053 |
| Mva1269I | GAATGC | 1 cut(s) | 517 |
| MvaI | CCWGG | 1 cut(s) | 893 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 175, 842, 953 |
| NciI | CCSGG | 1 cut(s) | 1053 |
| NdeII | GATC | 3 cut(s) | 369, 880, 1159 |
| NlaIII | CATG | 2 cut(s) | 140, 598 |
| NlaIV | GGNNCC | 3 cut(s) | 371, 608, 1182 |
| NmeAIII | GCCGAG | 1 cut(s) | 1201 |
| NmuCI | GTSAC | 1 cut(s) | 1146 |
| NspI | RCATGY | 1 cut(s) | 598 |
| PctI | GAATGC | 1 cut(s) | 517 |
| PfeI | GAWTC | 1 cut(s) | 490 |
| PinAI | ACCGGT | 1 cut(s) | 182 |
| PkrI | GCNGC | 3 cut(s) | 269, 445, 1225 |
| PleI | GAGTC | 3 cut(s) | 477, 876, 1136 |
| PpsI | GAGTC | 3 cut(s) | 477, 876, 1136 |
| PpuMI | RGGWCCY | 1 cut(s) | 607 |
| Psp5II | RGGWCCY | 1 cut(s) | 607 |
| Psp6I | CCWGG | 1 cut(s) | 891 |
| PspEI | GGTNACC | 1 cut(s) | 671 |
| PspFI | CCCAGC | 2 cut(s) | 1091, 1226 |
| PspGI | CCWGG | 1 cut(s) | 891 |
| PspN4I | GGNNCC | 3 cut(s) | 371, 608, 1182 |
| PspPI | GGNCC | 4 cut(s) | 282, 607, 649, 1094 |
| PspPPI | RGGWCCY | 1 cut(s) | 607 |
| PstNI | CAGNNNCTG | 1 cut(s) | 871 |
| PsuI | RGATCY | 1 cut(s) | 369 |
| PvuII | CAGCTG | 1 cut(s) | 248 |
| RsaI | GTAC | 1 cut(s) | 480 |
| RsaNI | GTAC | 1 cut(s) | 479 |
| SaqAI | TTAA | 5 cut(s) | 66, 524, 558, 771, 1046 |
| SatI | GCNGC | 3 cut(s) | 268, 444, 1224 |
| Sau3AI | GATC | 3 cut(s) | 369, 880, 1159 |
| Sau96I | GGNCC | 4 cut(s) | 282, 607, 649, 1094 |
| SchI | GAGTC | 3 cut(s) | 477, 877, 1136 |
| ScrFI | CCNGG | 2 cut(s) | 893, 1053 |
| SfaNI | GCATC | 3 cut(s) | 430, 965, 1162 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 842 |
| SinI | GGWCC | 3 cut(s) | 282, 607, 649 |
| SmlI | CTYRAG | 1 cut(s) | 27 |
| SmoI | CTYRAG | 1 cut(s) | 27 |
| Sse9I | AATT | 5 cut(s) | 252, 543, 773, 787, 861 |
| SsiI | CCGC | 3 cut(s) | 147, 176, 265 |
| StyD4I | CCNGG | 2 cut(s) | 891, 1051 |
| StyI | CCWWGG | 3 cut(s) | 386, 1192, 1213 |
| TaaI | ACNGT | 5 cut(s) | 57, 212, 434, 649, 1021 |
| TasI | AATT | 5 cut(s) | 252, 543, 773, 787, 861 |
| TfiI | GAWTC | 1 cut(s) | 490 |
| Tru1I | TTAA | 5 cut(s) | 66, 524, 558, 771, 1046 |
| Tru9I | TTAA | 5 cut(s) | 66, 524, 558, 771, 1046 |
| TscAI | CASTG | 3 cut(s) | 215, 332, 352 |
| TseFI | GTSAC | 1 cut(s) | 1146 |
| TseI | GCWGC | 3 cut(s) | 267, 443, 1223 |
| Tsp45I | GTSAC | 1 cut(s) | 1146 |
| TspDTI | ATGAA | 4 cut(s) | 141, 288, 726, 746 |
| TspGWI | ACGGA | 2 cut(s) | 113, 382 |
| TspRI | CASTG | 3 cut(s) | 215, 332, 352 |
| VpaK11BI | GGWCC | 3 cut(s) | 282, 607, 649 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 930, 1191 |
| XceI | RCATGY | 1 cut(s) | 598 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 215 |