RLG00000007254

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000182
Physical Location & Seq
Forward (+)
14978830 .. 14979702
873 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007254

Sequence Viewer

Length: 510 bp
ATGGCTTGCCCACACAAGAAGAAGGAAAATCATTTCGTTATGGTGGATAGGGAGGAAAGCGACAATGCCATTGAACCTGAAGGTATGGAGGTTGATTCTGAGTCGGCTACTCAGGAGGTGGAGAATGAAGCTAAGCTCAACACTGTTGACTTGAACCCCCATCTCTGGAATGGACCTATCTATGATGTGAATATGGCTTTTTCACCTCCTAAGGAAATCTATTCCCCCAGGGATGCGGTGAATTATTTCTTAGCTAATCATAACTACTTAAACGTGCAGTTTGAAAATTTTGATGATGCTAGAGGCTCCGATATTGGTAAGAGCGAGGATTTGAATAAGGATGAGATCAAAATGGTGAATGGAAAGAGGGCTCTTATGCTTAAGGCTGAGAGCTCTGACATGAGTACTGGTTCTAGGAAAAGGACTAGGGAAATGGCTGCAGATCAAGGAATGAAGGAGGCTAATGTGGAGGAGGTTGGCACCTCTTCACCAAAAATGCAGAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.07

Weight (kDa)

4.85

Isoelectric Point (pI)

52.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 479
AciI CCGC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 1 cut(s) 406
AfiI CCNNNNNNNGG 1 cut(s) 165
AflII CTTAAG 1 cut(s) 380
AgsI TTSAA 4 cut(s) 74, 154, 284, 334
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 4 cut(s) 131, 136, 254, 393
AluI AGCT 4 cut(s) 131, 136, 254, 393
Alw21I GWGCWC 1 cut(s) 395
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 286
Asp700I GAANNNNTTC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 4 cut(s) 195, 250, 367, 480
AvaII GGWCC 1 cut(s) 173
AxyI CCTNAGG 1 cut(s) 210
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 2 cut(s) 373, 395
Bbv12I GWGCWC 1 cut(s) 395
BbvI GCAGC 1 cut(s) 424
BccI CCATC 1 cut(s) 168
BciT130I CCWGG 1 cut(s) 229
BfaI CTAG 3 cut(s) 300, 414, 426
BfmI CTRYAG 1 cut(s) 438
BfrI CTTAAG 1 cut(s) 380
BisI GCNGC 1 cut(s) 438
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 439
BmcAI AGTACT 1 cut(s) 406
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 2 cut(s) 307, 481
BmrFI CCNGG 1 cut(s) 229
BmsI GCATC 2 cut(s) 223, 286
Bpu1102I GCTNAGC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 227, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 412
Bse21I CCTNAGG 1 cut(s) 210
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 227, 228
BseGI GGATG 2 cut(s) 238, 346
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMII CTCAG 3 cut(s) 90, 125, 378
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 485
BseXI GCAGC 1 cut(s) 424
BsgI GTGCAG 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 479
BsiHKAI GWGCWC 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 373, 395
Bsp143I GATC 2 cut(s) 345, 442
Bsp1720I GCTNAGC 1 cut(s) 132
BspACI CCGC 1 cut(s) 236
BspCNI CTCAG 3 cut(s) 91, 124, 379
BspLI GGNNCC 2 cut(s) 307, 481
BspMAI CTGCAG 1 cut(s) 442
BspT107I GGYRCC 1 cut(s) 479
BspTI CTTAAG 1 cut(s) 380
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 2 cut(s) 227, 228
BssMI GATC 2 cut(s) 345, 442
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 490
BstAFI CTTAAG 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 6 cut(s) 99, 111, 132, 210, 250, 387
BstF5I GGATG 2 cut(s) 238, 346
BstKTI GATC 2 cut(s) 348, 445
BstMBI GATC 2 cut(s) 345, 442
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 227
BstSFI CTRYAG 1 cut(s) 438
BstV1I GCAGC 1 cut(s) 424
Bsu36I CCTNAGG 1 cut(s) 210
BtsCI GGATG 2 cut(s) 238, 346
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 405
CviAII CATG 2 cut(s) 400, 507
CviQI GTAC 1 cut(s) 405
DdeI CTNAG 6 cut(s) 99, 111, 132, 210, 250, 387
DpnI GATC 2 cut(s) 347, 444
DpnII GATC 2 cut(s) 345, 442
Eam1104I CTCTTC 1 cut(s) 490
EarI CTCTTC 1 cut(s) 490
Ecl136II GAGCTC 1 cut(s) 393
Eco24I GRGCYC 2 cut(s) 373, 395
Eco47I GGWCC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 210
EcoICRI GAGCTC 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 227
EcoT38I GRGCYC 2 cut(s) 373, 395
FaeI CATG 2 cut(s) 403, 510
FaiI YATR 8 cut(s) 41, 86, 183, 194, 261, 377, 401, 508
FatI CATG 2 cut(s) 399, 506
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 2 cut(s) 245, 353
FriOI GRGCYC 2 cut(s) 373, 395
Fsp4HI GCNGC 1 cut(s) 438
FspBI CTAG 3 cut(s) 300, 414, 426
GluI GCNGC 1 cut(s) 438
Hin1II CATG 2 cut(s) 403, 510
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 95, 101
HphI GGTGA 4 cut(s) 195, 250, 367, 480
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 100, 310, 397
Hpy188III TCNNGA 2 cut(s) 113, 166
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 3 cut(s) 16, 74, 448
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 3 cut(s) 277, 440, 499
HpyF3I CTNAG 6 cut(s) 99, 111, 132, 210, 250, 387
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 2 cut(s) 403, 510
Kzo9I GATC 2 cut(s) 345, 442
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 6 cut(s) 90, 98, 151, 214, 241, 393
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 2 cut(s) 223, 286
MaeI CTAG 3 cut(s) 300, 414, 426
MaeII ACGT 1 cut(s) 273
MalI GATC 2 cut(s) 347, 444
MboI GATC 2 cut(s) 345, 442
MboII GAAGA 2 cut(s) 31, 477
MhlI GDGCHC 2 cut(s) 373, 395
MluCI AATT 2 cut(s) 241, 286
MlyI GAGTC 1 cut(s) 110
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 2 cut(s) 269, 381
MspCI CTTAAG 1 cut(s) 380
MspR9I CCNGG 1 cut(s) 229
MvaI CCWGG 1 cut(s) 229
NdeII GATC 2 cut(s) 345, 442
NlaIII CATG 2 cut(s) 403, 510
NlaIV GGNNCC 2 cut(s) 307, 481
PasI CCCWGGG 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 439
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Psp124BI GAGCTC 1 cut(s) 395
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 307, 481
PspPI GGNCC 1 cut(s) 173
PstI CTGCAG 1 cut(s) 442
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
SacI GAGCTC 1 cut(s) 395
SaqAI TTAA 2 cut(s) 269, 381
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 2 cut(s) 345, 442
Sau96I GGNCC 1 cut(s) 173
ScaI AGTACT 1 cut(s) 406
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 229
SduI GDGCHC 2 cut(s) 373, 395
SfaNI GCATC 2 cut(s) 223, 286
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 2 cut(s) 241, 286
SsiI CCGC 1 cut(s) 236
SspMI CTAG 3 cut(s) 300, 414, 426
SstI GAGCTC 1 cut(s) 395
StyD4I CCNGG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 276
TasI AATT 2 cut(s) 241, 286
TatI WGTACW 1 cut(s) 404
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 2 cut(s) 269, 381
Tru9I TTAA 2 cut(s) 269, 381
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 437
TspDTI ATGAA 2 cut(s) 141, 467
TspRI CASTG 1 cut(s) 148
Vha464I CTTAAG 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 1 cut(s) 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 3 cut(s) 300, 414, 426
ZrmI AGTACT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.