ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 101 - 181 | 2.6e-11 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 25 |
| AclWI | GGATC | 2 cut(s) | 533, 562 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 2 cut(s) | 85, 101 |
| AfaI | GTAC | 1 cut(s) | 431 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 25, 379 |
| AgsI | TTSAA | 1 cut(s) | 392 |
| AjnI | CCWGG | 1 cut(s) | 24 |
| AleI | CACNNNNGTG | 1 cut(s) | 257 |
| AluBI | AGCT | 1 cut(s) | 415 |
| AluI | AGCT | 1 cut(s) | 415 |
| Alw21I | GWGCWC | 1 cut(s) | 130 |
| Alw26I | GTCTC | 1 cut(s) | 554 |
| AlwI | GGATC | 2 cut(s) | 533, 562 |
| Ama87I | CYCGRG | 2 cut(s) | 57, 437 |
| AoxI | GGCC | 3 cut(s) | 3, 8, 482 |
| ApaI | GGGCCC | 1 cut(s) | 12 |
| ApoI | RAATTY | 2 cut(s) | 85, 101 |
| AspS9I | GGNCC | 2 cut(s) | 8, 9 |
| AsuC2I | CCSGG | 3 cut(s) | 7, 58, 59 |
| AsuHPI | GGTGA | 3 cut(s) | 145, 436, 519 |
| AvaI | CYCGRG | 2 cut(s) | 57, 437 |
| BaeGI | GKGCMC | 1 cut(s) | 12 |
| BanII | GRGCYC | 1 cut(s) | 12 |
| BauI | CACGAG | 1 cut(s) | 123 |
| Bbv12I | GWGCWC | 1 cut(s) | 130 |
| BccI | CCATC | 1 cut(s) | 516 |
| BceAI | ACGGC | 3 cut(s) | 51, 469, 564 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 89, 123 |
| BciT130I | CCWGG | 1 cut(s) | 26 |
| BclI | TGATCA | 1 cut(s) | 241 |
| BcnI | CCSGG | 3 cut(s) | 7, 58, 59 |
| BcoDI | GTCTC | 1 cut(s) | 554 |
| BfaI | CTAG | 1 cut(s) | 574 |
| BglII | AGATCT | 1 cut(s) | 324 |
| Bme1390I | CCNGG | 4 cut(s) | 7, 26, 58, 59 |
| BmeT110I | CYCGRG | 2 cut(s) | 57, 437 |
| BmgT120I | GGNCC | 2 cut(s) | 8, 9 |
| BmiI | GGNNCC | 3 cut(s) | 10, 11, 226 |
| BmrFI | CCNGG | 4 cut(s) | 7, 26, 58, 59 |
| BmsI | GCATC | 1 cut(s) | 304 |
| Bpu10I | CCTNAGC | 1 cut(s) | 129 |
| BpuMI | CCSGG | 3 cut(s) | 7, 58, 59 |
| BsaJI | CCNNGG | 4 cut(s) | 57, 58, 67, 485 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 25, 379 |
| Bse1I | ACTGG | 2 cut(s) | 111, 285 |
| BseBI | CCWGG | 1 cut(s) | 26 |
| BseDI | CCNNGG | 4 cut(s) | 57, 58, 67, 485 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 25, 379 |
| BseMII | CTCAG | 1 cut(s) | 143 |
| BseNI | ACTGG | 2 cut(s) | 111, 285 |
| BseSI | GKGCMC | 1 cut(s) | 12 |
| BshFI | GGCC | 3 cut(s) | 5, 10, 484 |
| BsiHKAI | GWGCWC | 1 cut(s) | 130 |
| BsiHKCI | CYCGRG | 2 cut(s) | 57, 437 |
| BsiSI | CCGG | 2 cut(s) | 6, 58 |
| BslFI | GGGAC | 1 cut(s) | 251 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 25, 379 |
| BsmAI | GTCTC | 1 cut(s) | 554 |
| BsmFI | GGGAC | 1 cut(s) | 251 |
| BsmI | GAATGC | 1 cut(s) | 124 |
| BsnI | GGCC | 3 cut(s) | 5, 10, 484 |
| BsoBI | CYCGRG | 2 cut(s) | 57, 437 |
| Bsp120I | GGGCCC | 1 cut(s) | 8 |
| Bsp1286I | GDGCHC | 2 cut(s) | 12, 130 |
| Bsp143I | GATC | 4 cut(s) | 241, 324, 538, 567 |
| BspANI | GGCC | 3 cut(s) | 5, 10, 484 |
| BspCNI | CTCAG | 1 cut(s) | 142 |
| BspLI | GGNNCC | 3 cut(s) | 10, 11, 226 |
| BspPI | GGATC | 2 cut(s) | 533, 562 |
| BsrI | ACTGG | 2 cut(s) | 111, 285 |
| BssECI | CCNNGG | 4 cut(s) | 57, 58, 67, 485 |
| BssMI | GATC | 4 cut(s) | 241, 324, 538, 567 |
| BssSI | CACGAG | 1 cut(s) | 123 |
| Bst2BI | CACGAG | 1 cut(s) | 123 |
| Bst2UI | CCWGG | 1 cut(s) | 26 |
| Bst4CI | ACNGT | 1 cut(s) | 259 |
| BstC8I | GCNNGC | 2 cut(s) | 335, 413 |
| BstDEI | CTNAG | 1 cut(s) | 129 |
| BstDSI | CCRYGG | 2 cut(s) | 67, 485 |
| BstEII | GGTNACC | 2 cut(s) | 28, 525 |
| BstKTI | GATC | 4 cut(s) | 244, 327, 541, 570 |
| BstMAI | GTCTC | 1 cut(s) | 554 |
| BstMBI | GATC | 4 cut(s) | 241, 324, 538, 567 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 153 |
| BstNI | CCWGG | 1 cut(s) | 26 |
| BstNSI | RCATGY | 1 cut(s) | 278 |
| BstPI | GGTNACC | 2 cut(s) | 28, 525 |
| BstSCI | CCNGG | 4 cut(s) | 5, 24, 56, 57 |
| BstSLI | GKGCMC | 1 cut(s) | 12 |
| BstX2I | RGATCY | 1 cut(s) | 324 |
| BstYI | RGATCY | 1 cut(s) | 324 |
| BsuRI | GGCC | 3 cut(s) | 5, 10, 484 |
| BtgI | CCRYGG | 2 cut(s) | 67, 485 |
| BtsIMutI | CAGTG | 2 cut(s) | 255, 563 |
| Cac8I | GCNNGC | 2 cut(s) | 335, 413 |
| Cfr13I | GGNCC | 2 cut(s) | 8, 9 |
| Cfr9I | CCCGGG | 1 cut(s) | 57 |
| CsiI | ACCWGGT | 1 cut(s) | 24 |
| Csp6I | GTAC | 1 cut(s) | 430 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 244, 279 |
| CviAII | CATG | 1 cut(s) | 275 |
| CviJI | RGCY | 7 cut(s) | 5, 10, 66, 156, 415, 426, 484 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 10, 66, 156, 415, 426, 484 |
| CviQI | GTAC | 1 cut(s) | 430 |
| DdeI | CTNAG | 1 cut(s) | 129 |
| DpnI | GATC | 4 cut(s) | 243, 326, 540, 569 |
| DpnII | GATC | 4 cut(s) | 241, 324, 538, 567 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eco24I | GRGCYC | 1 cut(s) | 12 |
| Eco88I | CYCGRG | 2 cut(s) | 57, 437 |
| Eco91I | GGTNACC | 2 cut(s) | 28, 525 |
| EcoO109I | RGGNCCY | 1 cut(s) | 9 |
| EcoO65I | GGTNACC | 2 cut(s) | 28, 525 |
| EcoRII | CCWGG | 1 cut(s) | 24 |
| EcoT38I | GRGCYC | 1 cut(s) | 12 |
| FaeI | CATG | 1 cut(s) | 278 |
| FaiI | YATR | 6 cut(s) | 45, 216, 276, 309, 407, 513 |
| FaqI | GGGAC | 1 cut(s) | 251 |
| FatI | CATG | 1 cut(s) | 274 |
| FbaI | TGATCA | 1 cut(s) | 241 |
| FriOI | GRGCYC | 1 cut(s) | 12 |
| FspBI | CTAG | 1 cut(s) | 574 |
| HaeIII | GGCC | 3 cut(s) | 5, 10, 484 |
| HapII | CCGG | 2 cut(s) | 6, 58 |
| Hin1II | CATG | 1 cut(s) | 278 |
| HincII | GTYRAC | 1 cut(s) | 463 |
| HindII | GTYRAC | 1 cut(s) | 463 |
| HinfI | GANTC | 2 cut(s) | 385, 504 |
| HpaII | CCGG | 2 cut(s) | 6, 58 |
| HphI | GGTGA | 3 cut(s) | 145, 436, 519 |
| Hpy166II | GTNNAC | 2 cut(s) | 444, 463 |
| Hpy188I | TCNGA | 4 cut(s) | 94, 117, 246, 300 |
| Hpy188III | TCNNGA | 4 cut(s) | 361, 437, 517, 559 |
| Hpy8I | GTNNAC | 2 cut(s) | 444, 463 |
| HpyAV | CCTTC | 1 cut(s) | 43 |
| HpyCH4III | ACNGT | 1 cut(s) | 259 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 153 |
| HpyF3I | CTNAG | 1 cut(s) | 129 |
| Hsp92II | CATG | 1 cut(s) | 278 |
| Ksp22I | TGATCA | 1 cut(s) | 241 |
| Kzo9I | GATC | 4 cut(s) | 241, 324, 538, 567 |
| LmnI | GCTCC | 2 cut(s) | 21, 292 |
| LweI | GCATC | 1 cut(s) | 304 |
| MabI | ACCWGGT | 1 cut(s) | 24 |
| MaeI | CTAG | 1 cut(s) | 574 |
| MaeIII | GTNAC | 4 cut(s) | 28, 208, 368, 525 |
| MalI | GATC | 4 cut(s) | 243, 326, 540, 569 |
| MboI | GATC | 4 cut(s) | 241, 324, 538, 567 |
| MboII | GAAGA | 1 cut(s) | 380 |
| MflI | RGATCY | 1 cut(s) | 324 |
| MhlI | GDGCHC | 2 cut(s) | 12, 130 |
| MluCI | AATT | 3 cut(s) | 85, 101, 169 |
| MnlI | CCTC | 4 cut(s) | 48, 151, 159, 215 |
| MseI | TTAA | 1 cut(s) | 168 |
| MslI | CAYNNNNRTG | 2 cut(s) | 45, 257 |
| MspI | CCGG | 2 cut(s) | 6, 58 |
| MspR9I | CCNGG | 4 cut(s) | 7, 26, 58, 59 |
| Mva1269I | GAATGC | 1 cut(s) | 124 |
| MvaI | CCWGG | 1 cut(s) | 26 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 153 |
| NciI | CCSGG | 3 cut(s) | 7, 58, 59 |
| NdeII | GATC | 4 cut(s) | 241, 324, 538, 567 |
| NlaIII | CATG | 1 cut(s) | 278 |
| NlaIV | GGNNCC | 3 cut(s) | 10, 11, 226 |
| NmuCI | GTSAC | 1 cut(s) | 525 |
| NspI | RCATGY | 1 cut(s) | 278 |
| OliI | CACNNNNGTG | 1 cut(s) | 257 |
| PaeR7I | CTCGAG | 1 cut(s) | 437 |
| PctI | GAATGC | 1 cut(s) | 124 |
| PfeI | GAWTC | 2 cut(s) | 385, 504 |
| PflFI | GACNNNGTC | 1 cut(s) | 186 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 25 |
| Psp6I | CCWGG | 1 cut(s) | 24 |
| PspEI | GGTNACC | 2 cut(s) | 28, 525 |
| PspGI | CCWGG | 1 cut(s) | 24 |
| PspN4I | GGNNCC | 3 cut(s) | 10, 11, 226 |
| PspOMI | GGGCCC | 1 cut(s) | 8 |
| PspPI | GGNCC | 2 cut(s) | 8, 9 |
| PsuI | RGATCY | 1 cut(s) | 324 |
| PsyI | GACNNNGTC | 1 cut(s) | 186 |
| RsaI | GTAC | 1 cut(s) | 431 |
| RsaNI | GTAC | 1 cut(s) | 430 |
| RseI | CAYNNNNRTG | 2 cut(s) | 45, 257 |
| SaqAI | TTAA | 1 cut(s) | 168 |
| Sau3AI | GATC | 4 cut(s) | 241, 324, 538, 567 |
| Sau96I | GGNCC | 2 cut(s) | 8, 9 |
| ScrFI | CCNGG | 4 cut(s) | 7, 26, 58, 59 |
| SduI | GDGCHC | 2 cut(s) | 12, 130 |
| SetI | ASST | 7 cut(s) | 27, 35, 135, 397, 417, 449, 502 |
| SexAI | ACCWGGT | 1 cut(s) | 24 |
| SfaNI | GCATC | 1 cut(s) | 304 |
| Sfr274I | CTCGAG | 1 cut(s) | 437 |
| SlaI | CTCGAG | 1 cut(s) | 437 |
| SmaI | CCCGGG | 1 cut(s) | 59 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 45, 257 |
| SmlI | CTYRAG | 1 cut(s) | 437 |
| SmoI | CTYRAG | 1 cut(s) | 437 |
| Sse9I | AATT | 3 cut(s) | 85, 101, 169 |
| SspMI | CTAG | 1 cut(s) | 574 |
| StyD4I | CCNGG | 4 cut(s) | 5, 24, 56, 57 |
| TaaI | ACNGT | 1 cut(s) | 259 |
| TaqI | TCGA | 2 cut(s) | 438, 558 |
| TasI | AATT | 3 cut(s) | 85, 101, 169 |
| TfiI | GAWTC | 2 cut(s) | 385, 504 |
| Tru1I | TTAA | 1 cut(s) | 168 |
| Tru9I | TTAA | 1 cut(s) | 168 |
| TscAI | CASTG | 2 cut(s) | 262, 570 |
| TseFI | GTSAC | 1 cut(s) | 525 |
| Tsp45I | GTSAC | 1 cut(s) | 525 |
| TspDTI | ATGAA | 2 cut(s) | 210, 500 |
| TspMI | CCCGGG | 1 cut(s) | 57 |
| TspRI | CASTG | 2 cut(s) | 262, 570 |
| Tth111I | GACNNNGTC | 1 cut(s) | 186 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 25 |
| XapI | RAATTY | 2 cut(s) | 85, 101 |
| XceI | RCATGY | 1 cut(s) | 278 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 419 |
| XhoI | CTCGAG | 1 cut(s) | 437 |
| XmaI | CCCGGG | 1 cut(s) | 57 |
| XspI | CTAG | 1 cut(s) | 574 |