RLG00000014370

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000182
Physical Location & Seq
Forward (+)
52257158 .. 52257899
742 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014370

Sequence Viewer

Length: 603 bp
ATGGCTTACAGCCCAAATGCTCGTGCTCAGACTAGCTCTTCACGTCCTCATAGCCCCATTGTCTTTAATTCTTACCCAAGACCTCGCCAAAACGAGCCACCTCTGGTCACCCATATTGGTGGTACCAAAATCATTGTTGATCAGAATGATACCACTGTGTTCGTACCTCAACATGCTCTCACCAGCAAGGAGCATTTGAACAACTATGTCTTGATTGCCAAGATCTTTGGTAAACGTGTCTCCCCGAGGAAGATTGTCAGGAAAGGATGGTCCCCCAACTTTGATTCGCGTACTGCAAAAATCGAAACTCTGATCCTTTGGGTGCGGCTTCCAAATCTCCCCCTTCAGTTCTGGAACAAGAATGCAATTCAACCGATTACCAAGGTCCTGGGTCGTTTCATCAAGCTAGATGAAAGGACTGAGTTCAATGAAAACTACATCTTTGCTCGTGTTTGCATGGAAATTGATCTCCGCACCCCGCTGAAAAGGACTCTGATTATTCGTGAAGAAGATGCAGGGGATCTCCCTTTTGATTTGGTGTCTAATCCGACTAGGCTTTTCCCGTCTTATGAAGCCATCTTTGAAGTCTACTTTGAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00630 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230
Pfam Domains
Protein Families
DUF4283 RVT_3

Protein Analysis

201

Amino Acids

23.17

Weight (kDa)

9.54

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 122
AccB1I GGYRCC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 588
AccII CGCG 1 cut(s) 289
AciI CCGC 3 cut(s) 325, 472, 479
AclWI GGATC 2 cut(s) 307, 528
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 3 cut(s) 124, 165, 292
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 5 cut(s) 199, 371, 427, 584, 596
AjiI CACGTC 1 cut(s) 44
AjnI CCWGG 1 cut(s) 387
AluBI AGCT 2 cut(s) 36, 406
AluI AGCT 2 cut(s) 36, 406
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 2 cut(s) 307, 528
Ama87I CYCGRG 1 cut(s) 244
Asp718I GGTACC 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 270, 385
AsuHPI GGTGA 2 cut(s) 100, 172
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 2 cut(s) 270, 385
BaeI ACNNNNGTAYC 2 cut(s) 141, 174
BanI GGYRCC 1 cut(s) 122
BauI CACGAG 2 cut(s) 21, 447
Bbv12I GWGCWC 1 cut(s) 28
BccI CCATC 2 cut(s) 261, 584
BciT130I CCWGG 1 cut(s) 389
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 3 cut(s) 33, 407, 552
BglII AGATCT 1 cut(s) 222
BisI GCNGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 327
Bme1390I CCNGG 1 cut(s) 389
Bme18I GGWCC 2 cut(s) 270, 385
BmeT110I CYCGRG 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 270, 385
BmiI GGNNCC 2 cut(s) 124, 272
BmrFI CCNGG 1 cut(s) 389
BmsI GCATC 1 cut(s) 502
BsaJI CCNNGG 3 cut(s) 245, 381, 388
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 3 cut(s) 245, 381, 388
BseGI GGATG 1 cut(s) 272
BseMII CTCAG 2 cut(s) 41, 411
Bsh1236I CGCG 1 cut(s) 289
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 244
BslFI GGGAC 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 1 cut(s) 367
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 5 cut(s) 139, 222, 312, 466, 520
BspACI CCGC 3 cut(s) 325, 472, 479
BspCNI CTCAG 2 cut(s) 40, 412
BspFNI CGCG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 124, 272
BspPI GGATC 2 cut(s) 307, 528
BspQI GCTCTTC 1 cut(s) 43
BspT107I GGYRCC 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 245, 381, 388
BssMI GATC 5 cut(s) 139, 222, 312, 466, 520
BssSI CACGAG 2 cut(s) 21, 447
BssT1I CCWWGG 1 cut(s) 381
Bst2BI CACGAG 2 cut(s) 21, 447
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 27, 420
BstEII GGTNACC 1 cut(s) 106
BstF5I GGATG 1 cut(s) 272
BstFNI CGCG 1 cut(s) 289
BstKTI GATC 5 cut(s) 142, 225, 315, 469, 523
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 5 cut(s) 139, 222, 312, 466, 520
BstNI CCWGG 1 cut(s) 389
BstNSI RCATGY 1 cut(s) 176
BstPI GGTNACC 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 387
BstUI CGCG 1 cut(s) 289
BstX2I RGATCY 2 cut(s) 222, 520
BstXI CCANNNNNNTGG 2 cut(s) 119, 388
BstYI RGATCY 2 cut(s) 222, 520
BtrI CACGTC 1 cut(s) 44
BtsCI GGATG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 153
Cfr13I GGNCC 2 cut(s) 270, 385
Csp6I GTAC 3 cut(s) 123, 164, 291
CviAII CATG 2 cut(s) 173, 457
CviJI RGCY 9 cut(s) 5, 12, 36, 54, 97, 328, 406, 556, 575
CviKI_1 RGCY 9 cut(s) 5, 12, 36, 54, 97, 328, 406, 556, 575
CviQI GTAC 3 cut(s) 123, 164, 291
DdeI CTNAG 2 cut(s) 27, 420
DpnI GATC 5 cut(s) 141, 224, 314, 468, 522
DpnII GATC 5 cut(s) 139, 222, 312, 466, 520
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 381
Eco47I GGWCC 2 cut(s) 270, 385
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 244
Eco91I GGTNACC 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 385
EcoO65I GGTNACC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 2 cut(s) 176, 460
FaiI YATR 6 cut(s) 51, 114, 174, 207, 458, 570
FaqI GGGAC 1 cut(s) 256
FatI CATG 2 cut(s) 172, 456
FauI CCCGC 1 cut(s) 486
FbaI TGATCA 1 cut(s) 139
FblI GTMKAC 1 cut(s) 588
Fnu4HI GCNGC 1 cut(s) 326
FokI GGATG 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 326
FspBI CTAG 3 cut(s) 33, 407, 552
GluI GCNGC 1 cut(s) 326
Hin1II CATG 2 cut(s) 176, 460
HinfI GANTC 2 cut(s) 284, 490
HphI GGTGA 2 cut(s) 100, 172
Hpy166II GTNNAC 2 cut(s) 233, 589
Hpy188I TCNGA 5 cut(s) 30, 144, 312, 495, 549
Hpy188III TCNNGA 4 cut(s) 211, 259, 352, 503
Hpy8I GTNNAC 2 cut(s) 233, 589
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 2 cut(s) 43, 235
HpyCH4V TGCA 4 cut(s) 296, 365, 456, 515
HpyF3I CTNAG 2 cut(s) 27, 420
HpySE526I ACGT 2 cut(s) 43, 235
Hsp92II CATG 2 cut(s) 176, 460
KpnI GGTACC 1 cut(s) 126
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 5 cut(s) 139, 222, 312, 466, 520
LguI GCTCTTC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 7 cut(s) 89, 196, 244, 337, 374, 401, 501
LweI GCATC 1 cut(s) 502
MaeI CTAG 3 cut(s) 33, 407, 552
MaeII ACGT 2 cut(s) 43, 235
MaeIII GTNAC 1 cut(s) 106
MalI GATC 5 cut(s) 141, 224, 314, 468, 522
MboI GATC 5 cut(s) 139, 222, 312, 466, 520
MboII GAAGA 4 cut(s) 30, 262, 518, 521
MflI RGATCY 2 cut(s) 222, 520
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 3 cut(s) 67, 366, 462
MlyI GAGTC 1 cut(s) 484
MmeI TCCRAC 1 cut(s) 572
MnlI CCTC 5 cut(s) 57, 93, 111, 177, 240
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 481
MspR9I CCNGG 1 cut(s) 389
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 1 cut(s) 389
MvnI CGCG 1 cut(s) 289
NdeII GATC 5 cut(s) 139, 222, 312, 466, 520
NlaIII CATG 2 cut(s) 176, 460
NlaIV GGNNCC 2 cut(s) 124, 272
NmuCI GTSAC 1 cut(s) 106
NspI RCATGY 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 43
PctI GAATGC 1 cut(s) 367
PfeI GAWTC 1 cut(s) 284
PkrI GCNGC 1 cut(s) 327
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
PpuMI RGGWCCY 1 cut(s) 385
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 387
PspEI GGTNACC 1 cut(s) 106
PspGI CCWGG 1 cut(s) 387
PspN4I GGNNCC 2 cut(s) 124, 272
PspPI GGNCC 2 cut(s) 270, 385
PspPPI RGGWCCY 1 cut(s) 385
PsuI RGATCY 2 cut(s) 222, 520
RsaI GTAC 3 cut(s) 124, 165, 292
RsaNI GTAC 3 cut(s) 123, 164, 291
RseI CAYNNNNRTG 1 cut(s) 117
SapI GCTCTTC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 5 cut(s) 139, 222, 312, 466, 520
Sau96I GGNCC 2 cut(s) 270, 385
SchI GAGTC 1 cut(s) 484
ScrFI CCNGG 1 cut(s) 389
SduI GDGCHC 1 cut(s) 28
SetI ASST 8 cut(s) 38, 46, 85, 103, 169, 238, 387, 408
SfaNI GCATC 1 cut(s) 502
SinI GGWCC 2 cut(s) 270, 385
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 3 cut(s) 67, 366, 462
SsiI CCGC 3 cut(s) 325, 472, 479
SspMI CTAG 3 cut(s) 33, 407, 552
StyD4I CCNGG 1 cut(s) 387
StyI CCWWGG 1 cut(s) 381
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 2 cut(s) 46, 238
TaqI TCGA 1 cut(s) 303
TasI AATT 3 cut(s) 67, 366, 462
TauI GCSGC 1 cut(s) 328
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 4 cut(s) 388, 426, 444, 585
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 270, 385
XceI RCATGY 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 588
XspI CTAG 3 cut(s) 33, 407, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.