Rh3AG199000

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000182
Physical Location & Seq
Forward (+)
19468017 .. 19477204
9188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG199000.1

Sequence Viewer

Length: 2403 bp
ATGACACGCGCTACACGCGCTTCTTTTTCCTCTCCTAGAGCTCTGCTAGGGTTTGTGCAAGCAAGATTTGCAGCCACCGGGGAGATCGGATGGTGGCCACCATGGCCAGGCTTTAGTACCACCACTTGGCAAATCTCCTTTTCCCATTCTACACCAAATGTCCCCAACTCTCTGTTTTTCCTTAGCATCGCCCCAACCATACTTGAAACCAGGGCCAAACATGACCTCCTTTCCCTTGAAAACATCAGCTACCCTCCTTCCTGGATCTACTCGTCCCTTGGAAAGATTAGCTATGTCCGGACCTCGACCTTTCTCTCTGCACACAACAGTTCAGCGAATGCATGTTCCAGAAGCACAATCATGGTGGCGCCTCTTAGTAGGATGGGTAAGAGATGGATCCACTTGGAACTTGATTCGGGTATCTACATTAATCAGGTACGCCGTTCTATTCTCAAATCACCTCTTAGTTTAGCTAATGATTGCTTTGATTTTATTAACGCCGCTGAGCAATTAATACGCTCGAGAGTTTTTATGAAGAATCGATACCTCTTCCGAGCACGCTTAATTCGGCCCTCGACCAACCCTACAAGATTCTATCTCATATTACCTAGTTGTGCTATGGATTTTGTGTTTTTTCAAGACCATGCGTACCTGATTTTATGTGCTGACCCCAACCCTTTGTCTTCGCGACCTCACCCCTGGATGACTATTTATAGGGTAGTGCTGGGTTTACACTGGTCACAGTCACAATCCGGTGTTCTACTTAGAAATTCCTTTGGCATTGCAATGGCTTACAGCCCTAACGCCCGAGCCCAAAGCAACCCCCCTCGAAGAAACCCTACATTTTTCAATCCCTATCCCAAACCAAACAGAAATGAACCACCTTTTGTTGCTAACATTGGCGGTACTCGTATAGTGGTAGAGAGCAGTCAAACCCAGGTGTTTATTCCTAGGCATTCCATTACCAACAAGGAACACCTCACCAACTACTGTCTTCTAGCCAAATTTTTTGGCAAGAAGGTGTCTCCTAGGAAAATCGCTAGGAAGTGCAATAGGATGTGGTCCTGCCTACAAGGGACTGTCAAGCTGACTCAAATGGCTAATGGATGGTACTCCCTCGAGTTCACCTACCTACAAGATGTCGATTTTGTCCTTGAGCACAGACCATGGTTTGTCAAGGGCAGAATTTTCCATATCCGGAAGTGGTCGCCTTCCTTTAACCCTCGTGAGGCTACAATTGAGACTTTGGTGCTGTGGATCAGGCTTCCAAATCTCCCATTACACTTCTGGAGCAGAGAGGCAATCCAACCGATTGTTCAGGTGGTTGGACATTTTATTAAACTGGATGAAAGAACAGAGGAAAGTGAGAACTATATCTTCGCTAGAGTCTGTATGGAAATTGACCTCAAAACCCCACTTAAAAGGGTTTTGGTTGTCCGAGAGGCTGATGAAGGAGACCTGCCCTTCGACTTGGTAAGCCCTCCTGCAAAGATTTTCATTTCATATGAAGCTATCTTTGAAATTTGTTTTGAATGCGGAAGCCACAAACATGTTATCCGCAAGTGCCCCTATAAGAAGAAAGAGAAGCACTTTGTCATGGTGGACAAAGAAGAAGGGGATCAGGATGTGGAGCCTGAAGGAATGGAGGTTGACTCGGAAATAAGAAACTTGGCAACAGAGAAGGTAATGATCTACTTCCCACAACCGGCAAAGCCTGACTTCGGCCTTGATGAAGTTGATGGCCCCAAGGACAACCACAATCCGTCTTCTCCTGATTGGACTCCGGTGGGAAGAAGGAACCGTACTGTGAGTAAACCGGCTGATACTGAAACAAGCGAAACTCCTGCAGACAAGAATAAGGAGAAAGTTAAGGTCTATACTCGAAAGGGCAAGGAAGTGATGGCACCTAAGAAAGCTACTAGGCAGGCTCTTATCAAGCCGGGGATAAGCTTTAAGGATGCTGCTAAAGGGCATGGCACTATTGTGATTGGTGACAAGGAAACTGATAGTTTTTTCAAAGCTCAGGGGCACAAGAAGACTGTCGGGGCTGTTGGAAGCTCATCCTCAAGTGAGGAGGTGGTGAGTGGTTCTACCTCTTTCAGCTCTGTCCTCTCTTATTCTTCTTTCCCTGAAATTGCTAAACTGTATAATTCCCCTATTTGCTATGACCATTTGATAGAGGAGTTATACTCACCTACGGATGCAGTTGCGTCCTATAATGCTAATTTGGGGTTGCCAAATGTGCAGTTTGAAAATTTTAATGATGCTAGGGCATCTAGGTTTGAGGAAGATGACAGCATGAATGAATATGAGATCCAGATGATCAATGGAAAGAGGGCTTTGTTTGCTAAGGCTGACAGCTCGCCCAAGCTGAAAGATAACAACGTCATGTTGGGCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

800

Amino Acids

90.88

Weight (kDa)

9.22

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 328 - 409 1.1e-14 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1467
AccB1I GGYRCC 2 cut(s) 367, 1903
AccB7I CCANNNNNTGG 1 cut(s) 126
AccII CGCG 3 cut(s) 9, 18, 688
AccIII TCCGGA 2 cut(s) 297, 1197
AciI CCGC 4 cut(s) 501, 903, 1536, 1558
AclWI GGATC 6 cut(s) 272, 391, 404, 1265, 1626, 2308
AcoI YGGCCR 2 cut(s) 95, 104
AcsI RAATTY 5 cut(s) 769, 1004, 1185, 1521, 2254
AcuI CTGAAG 1 cut(s) 1656
AcyI GRCGYC 1 cut(s) 368
AfaI GTAC 6 cut(s) 118, 438, 650, 907, 1112, 1804
AfiI CCNNNNNNNGG 5 cut(s) 107, 126, 1228, 1705, 1721
AflIII ACRYGT 1 cut(s) 1549
AgsI TTSAA 8 cut(s) 206, 239, 638, 850, 1520, 1532, 2017, 2252
AjnI CCWGG 5 cut(s) 106, 209, 260, 698, 936
AjuI GAANNNNNNNTTGG 2 cut(s) 1299, 1331
AleI CACNNNNGTG 1 cut(s) 1982
Alw21I GWGCWC 3 cut(s) 43, 559, 1161
Alw26I GTCTC 3 cut(s) 1029, 1235, 1449
AlwI GGATC 6 cut(s) 272, 391, 404, 1265, 1626, 2308
Ama87I CYCGRG 3 cut(s) 520, 807, 1118
Aor13HI TCCGGA 2 cut(s) 297, 1197
AoxI GGCC 7 cut(s) 95, 104, 213, 569, 1723, 1741, 2395
ApeKI GCWGC 2 cut(s) 71, 1961
ApoI RAATTY 5 cut(s) 769, 1004, 1185, 1521, 2254
ArsI GACNNNNNNTTYG 2 cut(s) 1448, 1480
AseI ATTAAT 2 cut(s) 429, 512
AspA2I CCTAGG 2 cut(s) 950, 1028
AspLEI GCGC 3 cut(s) 11, 20, 370
AspS9I GGNCC 6 cut(s) 213, 300, 570, 1062, 1742, 2395
AsuC2I CCSGG 2 cut(s) 79, 1941
AsuHPI GGTGA 7 cut(s) 450, 686, 973, 1117, 2003, 2092, 2184
AvaI CYCGRG 3 cut(s) 520, 807, 1118
AvaII GGWCC 2 cut(s) 300, 1062
AvrII CCTAGG 2 cut(s) 950, 1028
BaeGI GKGCMC 2 cut(s) 1568, 2031
BalI TGGCCA 2 cut(s) 97, 106
BamHI GGATCC 1 cut(s) 396
BanI GGYRCC 2 cut(s) 367, 1903
BanII GRGCYC 2 cut(s) 43, 814
BarI GAAGNNNNNNTAC 6 cut(s) 527, 559, 823, 855, 1786, 1818
BauI CACGAG 1 cut(s) 1224
BbsI GAAGAC 4 cut(s) 675, 986, 1758, 2042
Bbv12I GWGCWC 3 cut(s) 43, 559, 1161
BbvI GCAGC 2 cut(s) 83, 1948
BccI CCATC 6 cut(s) 84, 376, 387, 1101, 1733, 1894
BceAI ACGGC 1 cut(s) 426
BcgI CGANNNNNNTGC 2 cut(s) 1826, 1860
BciT130I CCWGG 5 cut(s) 108, 211, 262, 700, 938
BclI TGATCA 1 cut(s) 2322
BcnI CCSGG 2 cut(s) 79, 1941
BcoDI GTCTC 3 cut(s) 1029, 1235, 1449
BfmI CTRYAG 1 cut(s) 1845
BfoI RGCGCY 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 1467
BglI GCCNNNNNGGC 1 cut(s) 103
BisI GCNGC 3 cut(s) 72, 501, 1962
BlnI CCTAGG 2 cut(s) 950, 1028
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 3 cut(s) 73, 502, 1963
Bme1390I CCNGG 7 cut(s) 79, 108, 211, 262, 700, 938, 1941
Bme18I GGWCC 2 cut(s) 300, 1062
BmeT110I CYCGRG 3 cut(s) 520, 807, 1118
BmgT120I GGNCC 6 cut(s) 213, 300, 570, 1062, 1742, 2395
BmiI GGNNCC 6 cut(s) 369, 398, 1632, 1744, 1799, 1905
BmrFI CCNGG 7 cut(s) 79, 108, 211, 262, 700, 938, 1941
BmsI GCATC 5 cut(s) 195, 1948, 2191, 2254, 2282
BpiI GAAGAC 4 cut(s) 675, 986, 1758, 2042
BplI GAGNNNNNCTC 4 cut(s) 1637, 1669, 2174, 2206
BpmI CTGGAG 1 cut(s) 1309
Bpu10I CCTNAGC 3 cut(s) 182, 2022, 2349
Bpu1102I GCTNAGC 1 cut(s) 504
BpuEI CTTGAG 2 cut(s) 1175, 2050
BpuMI CCSGG 2 cut(s) 79, 1941
Bsa29I ATCGAT 1 cut(s) 541
BsaHI GRCGYC 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 1449
BsaWI WCCGGW 4 cut(s) 297, 752, 1197, 1783
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 5 cut(s) 107, 126, 1228, 1705, 1721
Bse118I RCCGGY 3 cut(s) 1705, 1816, 2397
Bse1I ACTGG 2 cut(s) 740, 1347
Bse3DI GCAATG 2 cut(s) 780, 792
BseAI TCCGGA 2 cut(s) 297, 1197
BseBI CCWGG 5 cut(s) 108, 211, 262, 700, 938
BseCI ATCGAT 1 cut(s) 541
BseLI CCNNNNNNNGG 5 cut(s) 107, 126, 1228, 1705, 1721
BseMI GCAATG 2 cut(s) 780, 792
BseMII CTCAG 2 cut(s) 495, 2036
BseNI ACTGG 2 cut(s) 740, 1347
BseRI GAGGAG 2 cut(s) 2087, 2195
BseSI GKGCMC 2 cut(s) 1568, 2031
BseXI GCAGC 2 cut(s) 83, 1948
BseYI CCCAGC 1 cut(s) 724
BsgI GTGCAG 2 cut(s) 303, 2264
Bsh1236I CGCG 3 cut(s) 9, 18, 688
BshFI GGCC 7 cut(s) 97, 106, 215, 571, 1725, 1743, 2397
BshNI GGYRCC 2 cut(s) 367, 1903
BshVI ATCGAT 1 cut(s) 541
BsiHKAI GWGCWC 3 cut(s) 43, 559, 1161
BsiHKCI CYCGRG 3 cut(s) 520, 807, 1118
BsiSI CCGG 9 cut(s) 78, 298, 753, 1198, 1706, 1784, 1817, 1940, 2398
BslFI GGGAC 3 cut(s) 146, 259, 1090
BslI CCNNNNNNNGG 5 cut(s) 107, 126, 1228, 1705, 1721
BsmAI GTCTC 3 cut(s) 1029, 1235, 1449
BsmFI GGGAC 3 cut(s) 146, 259, 1090
BsmI GAATGC 3 cut(s) 343, 955, 1538
BsnI GGCC 7 cut(s) 97, 106, 215, 571, 1725, 1743, 2397
Bso31I GGTCTC 1 cut(s) 1449
BsoBI CYCGRG 3 cut(s) 520, 807, 1118
Bsp1286I GDGCHC 6 cut(s) 43, 559, 814, 1161, 1568, 2031
Bsp13I TCCGGA 2 cut(s) 297, 1197
Bsp143I GATC 8 cut(s) 84, 264, 396, 1257, 1618, 1689, 2313, 2322
Bsp1720I GCTNAGC 1 cut(s) 504
Bsp19I CCATGG 2 cut(s) 101, 1166
Bsp68I TCGCGA 1 cut(s) 688
BspACI CCGC 4 cut(s) 501, 903, 1536, 1558
BspANI GGCC 7 cut(s) 97, 106, 215, 571, 1725, 1743, 2397
BspCNI CTCAG 2 cut(s) 496, 2035
BspDI ATCGAT 1 cut(s) 541
BspEI TCCGGA 2 cut(s) 297, 1197
BspFNI CGCG 3 cut(s) 9, 18, 688
BspLI GGNNCC 6 cut(s) 369, 398, 1632, 1744, 1799, 1905
BspMAI CTGCAG 1 cut(s) 1849
BspMI ACCTGC 1 cut(s) 1467
BspPI GGATC 6 cut(s) 272, 391, 404, 1265, 1626, 2308
BspT107I GGYRCC 2 cut(s) 367, 1903
BspTNI GGTCTC 1 cut(s) 1449
BsrDI GCAATG 2 cut(s) 780, 792
BsrFI RCCGGY 3 cut(s) 1705, 1816, 2397
BsrI ACTGG 2 cut(s) 740, 1347
BssAI RCCGGY 3 cut(s) 1705, 1816, 2397
BssMI GATC 8 cut(s) 84, 264, 396, 1257, 1618, 1689, 2313, 2322
BssNI GRCGYC 1 cut(s) 368
BssSI CACGAG 1 cut(s) 1224
BssT1I CCWWGG 6 cut(s) 101, 277, 950, 1028, 1166, 1746
Bst2BI CACGAG 1 cut(s) 1224
Bst2UI CCWGG 5 cut(s) 108, 211, 262, 700, 938
Bst4CI ACNGT 8 cut(s) 329, 744, 992, 1081, 1802, 1807, 2041, 2145
Bst6I CTCTTC 1 cut(s) 554
BstACI GRCGYC 1 cut(s) 368
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 4 cut(s) 60, 559, 1926, 2363
BstDEI CTNAG 8 cut(s) 182, 374, 464, 504, 764, 1908, 2022, 2349
BstDSI CCRYGG 2 cut(s) 101, 1166
BstFNI CGCG 3 cut(s) 9, 18, 688
BstH2I RGCGCY 1 cut(s) 371
BstHHI GCGC 3 cut(s) 11, 20, 370
BstKTI GATC 8 cut(s) 87, 267, 399, 1260, 1621, 1692, 2316, 2325
BstMAI GTCTC 3 cut(s) 1029, 1235, 1449
BstMBI GATC 8 cut(s) 84, 264, 396, 1257, 1618, 1689, 2313, 2322
BstMWI GCNNNNNNNGC 6 cut(s) 15, 17, 68, 103, 2242, 2345
BstNI CCWGG 5 cut(s) 108, 211, 262, 700, 938
BstNSI RCATGY 2 cut(s) 345, 1553
BstSCI CCNGG 7 cut(s) 77, 106, 209, 260, 698, 936, 1939
BstSFI CTRYAG 1 cut(s) 1845
BstSLI GKGCMC 2 cut(s) 1568, 2031
BstUI CGCG 3 cut(s) 9, 18, 688
BstV1I GCAGC 2 cut(s) 83, 1948
BstV2I GAAGAC 4 cut(s) 675, 986, 1758, 2042
BstX2I RGATCY 3 cut(s) 264, 396, 2313
BstYI RGATCY 3 cut(s) 264, 396, 2313
Bsu15I ATCGAT 1 cut(s) 541
BsuRI GGCC 7 cut(s) 97, 106, 215, 571, 1725, 1743, 2397
BsuTUI ATCGAT 1 cut(s) 541
BtgI CCRYGG 2 cut(s) 101, 1166
BtgZI GCGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 733
BtuMI TCGCGA 1 cut(s) 688
BveI ACCTGC 1 cut(s) 1467
Cac8I GCNNGC 4 cut(s) 60, 559, 1926, 2363
CfoI GCGC 3 cut(s) 11, 20, 370
Cfr10I RCCGGY 3 cut(s) 1705, 1816, 2397
Cfr13I GGNCC 6 cut(s) 213, 300, 570, 1062, 1742, 2395
ClaI ATCGAT 1 cut(s) 541
CseI GACGC 1 cut(s) 2199
Csp6I GTAC 6 cut(s) 117, 437, 649, 906, 1111, 1803
CspCI CAANNNNNGTGG 2 cut(s) 345, 380
CviQI GTAC 6 cut(s) 117, 437, 649, 906, 1111, 1803
DdeI CTNAG 8 cut(s) 182, 374, 464, 504, 764, 1908, 2022, 2349
DinI GGCGCC 1 cut(s) 369
DpnI GATC 8 cut(s) 86, 266, 398, 1259, 1620, 1691, 2315, 2324
DpnII GATC 8 cut(s) 84, 264, 396, 1257, 1618, 1689, 2313, 2322
EaeI YGGCCR 2 cut(s) 95, 104
Eam1104I CTCTTC 1 cut(s) 554
EarI CTCTTC 1 cut(s) 554
Ecl136II GAGCTC 1 cut(s) 41
Eco130I CCWWGG 6 cut(s) 101, 277, 950, 1028, 1166, 1746
Eco24I GRGCYC 2 cut(s) 43, 814
Eco31I GGTCTC 1 cut(s) 1449
Eco47I GGWCC 2 cut(s) 300, 1062
Eco53kI GAGCTC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 1656
Eco88I CYCGRG 3 cut(s) 520, 807, 1118
EcoICRI GAGCTC 1 cut(s) 41
EcoRII CCWGG 5 cut(s) 106, 209, 260, 698, 936
EcoT14I CCWWGG 6 cut(s) 101, 277, 950, 1028, 1166, 1746
EcoT22I ATGCAT 1 cut(s) 343
EcoT38I GRGCYC 2 cut(s) 43, 814
EgeI GGCGCC 1 cut(s) 369
EheI GGCGCC 1 cut(s) 369
ErhI CCWWGG 6 cut(s) 101, 277, 950, 1028, 1166, 1746
FalI AAGNNNNNCTT 2 cut(s) 1703, 1735
FaqI GGGAC 3 cut(s) 146, 259, 1090
FauNDI CATATG 1 cut(s) 1504
FbaI TGATCA 1 cut(s) 2322
Fnu4HI GCNGC 3 cut(s) 72, 501, 1962
FriOI GRGCYC 2 cut(s) 43, 814
Fsp4HI GCNGC 3 cut(s) 72, 501, 1962
GlaI GCGC 3 cut(s) 10, 19, 369
GluI GCNGC 3 cut(s) 72, 501, 1962
GsaI CCCAGC 1 cut(s) 728
GsuI CTGGAG 1 cut(s) 1309
HaeII RGCGCY 1 cut(s) 371
HaeIII GGCC 7 cut(s) 97, 106, 215, 571, 1725, 1743, 2397
HapII CCGG 9 cut(s) 78, 298, 753, 1198, 1706, 1784, 1817, 1940, 2398
HgaI GACGC 1 cut(s) 2199
HhaI GCGC 3 cut(s) 11, 20, 370
Hin1I GRCGYC 1 cut(s) 368
Hin6I GCGC 3 cut(s) 9, 18, 368
HinP1I GCGC 3 cut(s) 9, 18, 368
HincII GTYRAC 1 cut(s) 1651
HindII GTYRAC 1 cut(s) 1651
HindIII AAGCTT 1 cut(s) 1948
HinfI GANTC 7 cut(s) 413, 538, 591, 1090, 1386, 1652, 1780
HpaII CCGG 9 cut(s) 78, 298, 753, 1198, 1706, 1784, 1817, 1940, 2398
HphI GGTGA 7 cut(s) 450, 686, 973, 1117, 2003, 2092, 2184
Hpy166II GTNNAC 5 cut(s) 731, 1125, 1603, 1651, 1814
Hpy188I TCNGA 4 cut(s) 89, 554, 1439, 1657
Hpy8I GTNNAC 5 cut(s) 731, 1125, 1603, 1651, 1814
HpyAV CCTTC 9 cut(s) 267, 1012, 1221, 1445, 1474, 1607, 1631, 1675, 1788
HpyCH4III ACNGT 8 cut(s) 329, 744, 992, 1081, 1802, 1807, 2041, 2145
HpyCH4IV ACGT 1 cut(s) 2385
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 17, 68, 103, 2242, 2345
HpyF3I CTNAG 8 cut(s) 182, 374, 464, 504, 764, 1908, 2022, 2349
HpySE526I ACGT 1 cut(s) 2385
Hsp92I GRCGYC 1 cut(s) 368
HspAI GCGC 3 cut(s) 9, 18, 368
KasI GGCGCC 1 cut(s) 367
Kpn2I TCCGGA 2 cut(s) 297, 1197
Ksp22I TGATCA 1 cut(s) 2322
Kzo9I GATC 8 cut(s) 84, 264, 396, 1257, 1618, 1689, 2313, 2322
LmnI GCTCC 2 cut(s) 1290, 1630
Lsp1109I GCAGC 2 cut(s) 83, 1948
LweI GCATC 5 cut(s) 195, 1948, 2191, 2254, 2282
MaeII ACGT 1 cut(s) 2385
MaeIII GTNAC 3 cut(s) 738, 744, 1991
MalI GATC 8 cut(s) 86, 266, 398, 1259, 1620, 1691, 2315, 2324
MboI GATC 8 cut(s) 84, 264, 396, 1257, 1618, 1689, 2313, 2322
MfeI CAATTG 1 cut(s) 1236
MflI RGATCY 3 cut(s) 264, 396, 2313
MhlI GDGCHC 6 cut(s) 43, 559, 814, 1161, 1568, 2031
MlsI TGGCCA 2 cut(s) 97, 106
MluNI TGGCCA 2 cut(s) 97, 106
Mly113I GGCGCC 1 cut(s) 368
MlyI GAGTC 4 cut(s) 1084, 1395, 1646, 1774
MmeI TCCRAC 3 cut(s) 1306, 1330, 2032
Mox20I TGGCCA 2 cut(s) 97, 106
Mph1103I ATGCAT 1 cut(s) 343
MroI TCCGGA 2 cut(s) 297, 1197
MscI TGGCCA 2 cut(s) 97, 106
MslI CAYNNNNRTG 4 cut(s) 359, 785, 1548, 1982
Msp20I TGGCCA 2 cut(s) 97, 106
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 9 cut(s) 78, 298, 753, 1198, 1706, 1784, 1817, 1940, 2398
MspR9I CCNGG 7 cut(s) 79, 108, 211, 262, 700, 938, 1941
MunI CAATTG 1 cut(s) 1236
Mva1269I GAATGC 3 cut(s) 343, 955, 1538
MvaI CCWGG 5 cut(s) 108, 211, 262, 700, 938
MvnI CGCG 3 cut(s) 9, 18, 688
MwoI GCNNNNNNNGC 6 cut(s) 15, 17, 68, 103, 2242, 2345
NarI GGCGCC 1 cut(s) 368
NciI CCSGG 2 cut(s) 79, 1941
NcoI CCATGG 2 cut(s) 101, 1166
NdeI CATATG 1 cut(s) 1504
NdeII GATC 8 cut(s) 84, 264, 396, 1257, 1618, 1689, 2313, 2322
NlaIV GGNNCC 6 cut(s) 369, 398, 1632, 1744, 1799, 1905
NmuCI GTSAC 3 cut(s) 738, 744, 1991
NruI TCGCGA 1 cut(s) 688
NsiI ATGCAT 1 cut(s) 343
NspI RCATGY 2 cut(s) 345, 1553
OliI CACNNNNGTG 1 cut(s) 1982
PaeR7I CTCGAG 2 cut(s) 520, 1118
PciI ACATGT 1 cut(s) 1549
PctI GAATGC 3 cut(s) 343, 955, 1538
PfeI GAWTC 3 cut(s) 413, 538, 591
PflMI CCANNNNNTGG 1 cut(s) 126
PfoI TCCNGGA 1 cut(s) 260
PkrI GCNGC 3 cut(s) 73, 502, 1963
PleI GAGTC 4 cut(s) 1084, 1394, 1646, 1774
PluTI GGCGCC 1 cut(s) 371
PpsI GAGTC 4 cut(s) 1084, 1394, 1646, 1774
PscI ACATGT 1 cut(s) 1549
PshBI ATTAAT 2 cut(s) 429, 512
Psp124BI GAGCTC 1 cut(s) 43
Psp6I CCWGG 5 cut(s) 106, 209, 260, 698, 936
PspFI CCCAGC 1 cut(s) 724
PspGI CCWGG 5 cut(s) 106, 209, 260, 698, 936
PspN4I GGNNCC 6 cut(s) 369, 398, 1632, 1744, 1799, 1905
PspPI GGNCC 6 cut(s) 213, 300, 570, 1062, 1742, 2395
PspXI VCTCGAGB 1 cut(s) 1118
PstI CTGCAG 1 cut(s) 1849
PsuI RGATCY 3 cut(s) 264, 396, 2313
RruI TCGCGA 1 cut(s) 688
RsaI GTAC 6 cut(s) 118, 438, 650, 907, 1112, 1804
RsaNI GTAC 6 cut(s) 117, 437, 649, 906, 1111, 1803
RseI CAYNNNNRTG 4 cut(s) 359, 785, 1548, 1982
SacI GAGCTC 1 cut(s) 43
SatI GCNGC 3 cut(s) 72, 501, 1962
Sau3AI GATC 8 cut(s) 84, 264, 396, 1257, 1618, 1689, 2313, 2322
Sau96I GGNCC 6 cut(s) 213, 300, 570, 1062, 1742, 2395
SchI GAGTC 4 cut(s) 1084, 1395, 1646, 1774
ScrFI CCNGG 7 cut(s) 79, 108, 211, 262, 700, 938, 1941
SduI GDGCHC 6 cut(s) 43, 559, 814, 1161, 1568, 2031
SfaNI GCATC 5 cut(s) 195, 1948, 2191, 2254, 2282
SfcI CTRYAG 1 cut(s) 1845
SfiI GGCCNNNNNGGCC 1 cut(s) 103
SfoI GGCGCC 1 cut(s) 369
Sfr274I CTCGAG 2 cut(s) 520, 1118
SinI GGWCC 2 cut(s) 300, 1062
SlaI CTCGAG 2 cut(s) 520, 1118
SmiMI CAYNNNNRTG 4 cut(s) 359, 785, 1548, 1982
SmlI CTYRAG 4 cut(s) 520, 1118, 1154, 2065
SmoI CTYRAG 4 cut(s) 520, 1118, 1154, 2065
SsiI CCGC 4 cut(s) 501, 903, 1536, 1558
SspDI GGCGCC 1 cut(s) 367
SstI GAGCTC 1 cut(s) 43
StyD4I CCNGG 7 cut(s) 77, 106, 209, 260, 698, 936, 1939
StyI CCWWGG 6 cut(s) 101, 277, 950, 1028, 1166, 1746
TaaI ACNGT 8 cut(s) 329, 744, 992, 1081, 1802, 1807, 2041, 2145
TaiI ACGT 1 cut(s) 2388
TaqI TCGA 9 cut(s) 305, 521, 541, 575, 829, 1119, 1143, 1467, 1882
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 3 cut(s) 413, 538, 591
TscAI CASTG 1 cut(s) 740
TseFI GTSAC 3 cut(s) 738, 744, 1991
TseI GCWGC 2 cut(s) 71, 1961
Tsp45I GTSAC 3 cut(s) 738, 744, 1991
TspGWI ACGGA 2 cut(s) 1752, 2213
TspRI CASTG 1 cut(s) 740
Van91I CCANNNNNTGG 1 cut(s) 126
VpaK11BI GGWCC 2 cut(s) 300, 1062
VspI ATTAAT 2 cut(s) 429, 512
XapI RAATTY 5 cut(s) 769, 1004, 1185, 1521, 2254
XceI RCATGY 2 cut(s) 345, 1553
XcmI CCANNNNNNNNNTGG 2 cut(s) 1284, 2324
XhoI CTCGAG 2 cut(s) 520, 1118
XmaJI CCTAGG 2 cut(s) 950, 1028
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.