Rroxscaffold_4G00281160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000182
Physical Location & Seq
Forward (+)
3516962 .. 3522936
5975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00281160.1

Sequence Viewer

Length: 336 bp
ATGGTTGAGAGATTTGAAAATGAGCAGCAAGTCTGTCTGGCTGAAATGGCAGACAATGAATTCATTAAGCCATTGCTTTCTAATGATATATCAATAGTGTTCCCGCAACCAATGTTCAACTACTTTGACTACAATGTTGAGCATCCTTCTGCTCAGACTGGTTCCGAGGCTCAAGGTAGAAAAGTGGCCCTTGGAGGGCGGTGTCTCGTAGGGGCAAGGGGAAAGGAAACTTCTACCCAAAGAGTGGGGTTTTGCTACTGGGCCAAACTATGGAAATGTCAAAGGATCAAATGTAGTACTGCCTGGGGTTTCCTTCAAAGATGTCACTCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.74

Weight (kDa)

8.59

Isoelectric Point (pI)

21.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 244, 270
AciI CCGC 2 cut(s) 104, 199
AclWI GGATC 1 cut(s) 293
AcsI RAATTY 1 cut(s) 59
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 3 cut(s) 195, 244, 270
AgsI TTSAA 3 cut(s) 17, 118, 317
AjnI CCWGG 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 1 cut(s) 293
AoxI GGCC 2 cut(s) 186, 261
ApeKI GCWGC 1 cut(s) 25
ApoI RAATTY 1 cut(s) 59
AspS9I GGNCC 2 cut(s) 187, 261
BbvI GCAGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 209
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
BmcAI AGTACT 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 304
BmgT120I GGNCC 2 cut(s) 187, 261
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 304
BmrI ACTGGG 1 cut(s) 268
BmsI GCATC 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 268
BpuEI CTTGAG 2 cut(s) 156, 313
BsaJI CCNNGG 3 cut(s) 165, 190, 303
Bsc4I CCNNNNNNNGG 3 cut(s) 195, 244, 270
Bse1I ACTGG 2 cut(s) 163, 263
Bse3DI GCAATG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 3 cut(s) 165, 190, 303
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 3 cut(s) 195, 244, 270
BseMI GCAATG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 2 cut(s) 163, 263
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 2 cut(s) 188, 263
BslI CCNNNNNNNGG 3 cut(s) 195, 244, 270
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 2 cut(s) 188, 263
Bsp143I GATC 1 cut(s) 285
BspACI CCGC 2 cut(s) 104, 199
BspANI GGCC 2 cut(s) 188, 263
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 163
BspPI GGATC 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 71
BsrI ACTGG 2 cut(s) 163, 263
BssECI CCNNGG 3 cut(s) 165, 190, 303
BssMI GATC 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 1 cut(s) 288
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 1 cut(s) 285
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 188, 263
BtsCI GGATG 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 187, 261
Csp6I GTAC 1 cut(s) 297
CviJI RGCY 5 cut(s) 41, 70, 170, 188, 263
CviKI_1 RGCY 5 cut(s) 41, 70, 170, 188, 263
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 1 cut(s) 153
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaiI YATR 2 cut(s) 89, 271
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FauI CCCGC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 26
HaeIII GGCC 2 cut(s) 188, 263
Hpy188I TCNGA 2 cut(s) 156, 166
HpyAV CCTTC 2 cut(s) 156, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 153
Kzo9I GATC 1 cut(s) 285
LpnPI CCDG 5 cut(s) 23, 144, 244, 289, 316
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 323
MalI GATC 1 cut(s) 287
MboI GATC 1 cut(s) 285
MluCI AATT 1 cut(s) 59
MnlI CCTC 2 cut(s) 160, 188
MseI TTAA 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 304
MvaI CCWGG 1 cut(s) 304
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 1 cut(s) 285
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 323
PflMI CCANNNNNTGG 2 cut(s) 244, 270
PkrI GCNGC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 2 cut(s) 187, 261
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 1 cut(s) 285
Sau96I GGNCC 2 cut(s) 187, 261
ScaI AGTACT 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 304
SetI ASST 2 cut(s) 178, 335
SfaNI GCATC 1 cut(s) 151
SmlI CTYRAG 2 cut(s) 171, 328
SmoI CTYRAG 2 cut(s) 171, 328
Sse9I AATT 1 cut(s) 59
SsiI CCGC 2 cut(s) 104, 199
StyD4I CCNGG 1 cut(s) 302
StyI CCWWGG 1 cut(s) 190
TasI AATT 1 cut(s) 59
TatI WGTACW 1 cut(s) 296
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 2 cut(s) 52, 72
Van91I CCANNNNNTGG 2 cut(s) 244, 270
XapI RAATTY 1 cut(s) 59
ZrmI AGTACT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.