Rh4CG238800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000182
Physical Location & Seq
Reverse (-)
48352132 .. 48352558
427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG238800.1

Sequence Viewer

Length: 348 bp
ATGGAAATCGACCTTCGAACTCCTTTGAAGCGTGTTTTGGTGATCCATGAAGAAGATGAGGGAGACCTCCCCTTTGATATGAAGACCTTGGAATGCCCTCGCAAAAAGAAAGATCAGCATTTCATTATGGTTGATAGAGAAGAGGGAGACAATGATGTGGAACCGGAGGGCATGGAGCTGGACTCTGAGAATAGAGGCCTTGCCTCTAAAAATGTCATGATTTATTTCCCCCAGCCGGCCAAAAGAGATGTGGATCATGATGATGGCAACCTAAACAATGCAAACCTAAACCCCCTTCCCCAGGATGGACCACTGTCTGTCGAAGGAGTAAGGCGACTTCAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.21

Weight (kDa)

4.68

Isoelectric Point (pI)

56.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 37, 261
AcoI YGGCCR 1 cut(s) 237
AfiI CCNNNNNNNGG 3 cut(s) 235, 301, 305
AgsI TTSAA 2 cut(s) 28, 341
AjnI CCWGG 1 cut(s) 300
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 57, 141
AlwI GGATC 2 cut(s) 37, 261
AoxI GGCC 2 cut(s) 196, 237
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspS9I GGNCC 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 52
AsuII TTCGAA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 308
BarI GAAGNNNNNNTAC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 89
BccI CCATC 2 cut(s) 257, 299
BciT130I CCWGG 1 cut(s) 302
BcoDI GTCTC 2 cut(s) 57, 141
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 302
BoxI GACNNNNGTC 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 89
BplI GAGNNNNNCTC 2 cut(s) 167, 199
Bpu14I TTCGAA 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 87, 300
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 301, 305
Bse118I RCCGGY 1 cut(s) 235
Bse8I GATNNNNATC 1 cut(s) 252
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 87, 300
BseGI GGATG 1 cut(s) 310
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 3 cut(s) 235, 301, 305
BseMII CTCAG 1 cut(s) 177
BseYI CCCAGC 1 cut(s) 231
BshFI GGCC 2 cut(s) 198, 239
BsiSI CCGG 2 cut(s) 164, 236
BslI CCNNNNNNNGG 3 cut(s) 235, 301, 305
BsmAI GTCTC 2 cut(s) 57, 141
BsmI GAATGC 1 cut(s) 98
BsnI GGCC 2 cut(s) 198, 239
Bso31I GGTCTC 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 16
Bsp143I GATC 3 cut(s) 42, 112, 253
BspANI GGCC 2 cut(s) 198, 239
BspCNI CTCAG 1 cut(s) 178
BspHI TCATGA 2 cut(s) 216, 256
BspLI GGNNCC 1 cut(s) 162
BspPI GGATC 2 cut(s) 37, 261
BspT104I TTCGAA 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 87, 300
BssMI GATC 3 cut(s) 42, 112, 253
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 315
Bst6I CTCTTC 1 cut(s) 135
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 186
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 3 cut(s) 45, 115, 256
BstMAI GTCTC 2 cut(s) 57, 141
BstMBI GATC 3 cut(s) 42, 112, 253
BstNI CCWGG 1 cut(s) 302
BstPAI GACNNNNGTC 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 300
BstV2I GAAGAC 1 cut(s) 89
BsuRI GGCC 2 cut(s) 198, 239
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 237
CciI TCATGA 2 cut(s) 216, 256
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 308
CviAII CATG 4 cut(s) 47, 172, 217, 257
CviJI RGCY 4 cut(s) 178, 198, 235, 239
CviKI_1 RGCY 4 cut(s) 178, 198, 235, 239
DdeI CTNAG 1 cut(s) 186
DpnI GATC 3 cut(s) 44, 114, 255
DpnII GATC 3 cut(s) 42, 112, 253
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 87
Eco147I AGGCCT 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 308
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 4 cut(s) 50, 175, 220, 260
FaiI YATR 6 cut(s) 48, 80, 128, 173, 218, 258
FatI CATG 4 cut(s) 46, 171, 216, 256
FokI GGATG 1 cut(s) 317
GsaI CCCAGC 1 cut(s) 235
HaeIII GGCC 2 cut(s) 198, 239
HapII CCGG 2 cut(s) 164, 236
Hin1II CATG 4 cut(s) 50, 175, 220, 260
HinfI GANTC 1 cut(s) 182
HpaII CCGG 2 cut(s) 164, 236
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 217, 257
HpyAV CCTTC 3 cut(s) 23, 305, 317
HpyCH4III ACNGT 1 cut(s) 315
HpyCH4V TGCA 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 4 cut(s) 50, 175, 220, 260
KroI GCCGGC 1 cut(s) 235
KroNI GCCGGC 1 cut(s) 237
Kzo9I GATC 3 cut(s) 42, 112, 253
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 6 cut(s) 164, 177, 245, 249, 287, 314
MalI GATC 3 cut(s) 44, 114, 255
MboI GATC 3 cut(s) 42, 112, 253
MboII GAAGA 4 cut(s) 62, 65, 94, 152
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 7 cut(s) 52, 77, 108, 136, 160, 188, 214
MroNI GCCGGC 1 cut(s) 235
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 2 cut(s) 164, 236
MspR9I CCNGG 1 cut(s) 302
Mva1269I GAATGC 1 cut(s) 98
MvaI CCWGG 1 cut(s) 302
NaeI GCCGGC 1 cut(s) 237
NdeII GATC 3 cut(s) 42, 112, 253
NgoMIV GCCGGC 1 cut(s) 235
NlaIII CATG 4 cut(s) 50, 175, 220, 260
NlaIV GGNNCC 1 cut(s) 162
NspV TTCGAA 1 cut(s) 16
PagI TCATGA 2 cut(s) 216, 256
PceI AGGCCT 1 cut(s) 198
PctI GAATGC 1 cut(s) 98
PdiI GCCGGC 1 cut(s) 237
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PshAI GACNNNNGTC 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 231
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 261
Sau3AI GATC 3 cut(s) 42, 112, 253
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 302
SetI ASST 6 cut(s) 15, 69, 89, 180, 273, 288
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 261
SseBI AGGCCT 1 cut(s) 198
StuI AGGCCT 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 315
TaqI TCGA 3 cut(s) 9, 16, 321
TscAI CASTG 1 cut(s) 318
TspDTI ATGAA 3 cut(s) 63, 95, 112
TspRI CASTG 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 308
XagI CCTNNNNNAGG 1 cut(s) 299
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.