Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007549

Physical Location & Seq

Genomic Coordinates Reverse (-)

2244852 .. 2251831

Gene Structure 6980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG032400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCTCCACTGGTCAGTGTCTATGTTGTGAATCGGTGCTCAGATAAAATCACTCAACTCACGGATAATGTCTACGTCTGTCGCTCTGGATCGGCTGTAGATTCTCAGGTGGTTTCCGACTATGTGAGGCACTTTCTTCATCAGCACACCATTCAGCTATGGCAGCCTGCTACTATCAAAGTTGTTGCTAATCTCATCAGGCTACTGTCATATGGCAACAAGGTTAGGTTTGAGGCGCCATTTTCCATTGGAGGTTCTGGCTCCAGTTACTTGTATGGATTCTTTAATCAAGCATGGAGAGAAGGAATGACCAAGGACGAAGAGGAGAAGTTGGTTGTGAAGGCAGTTTCCCTAGCCATTGCACGAGATGGAGCCAGTGGTGGTGTTGTCCGCACTGTTGTGACATTGCTGTGGATTTGCCTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

142

Amino Acids

15.76

Weight (kDa)

8.84

Isoelectric Point (pI)

30.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	9 - 70	8.6e-08	Proteasome subunit
Proteasome	PF00227	71 - 134	9.5e-10	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007549)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145031 RchiOBHm_Chr7g0217061
rosa_laevigata	RLG00000007225
rosa_multiflora	Rmu_sc0002205.1_g000037
rosa_roxburghii	Rroxscaffold_1G00060100 Rroxscaffold_3G00222180 Rroxscaffold_4G00312300 Rroxscaffold_5G00345400 Rroxscaffold_5G00346530 Rroxscaffold_5G00367330
rosa_rugosa	Rorug02G0170400 Rorug02G0305000 Rorug03G0116400 Rorug03G0116500 Rorug03G0116600 Rorug04G0037800
rosa_samantha	Rh2DG657600 Rh3CG032400 Rh5AG068100 Rh5AG401400 Rh5AG439600 Rh5AG478200 Rh7AG425700
rosa_wichuraiana	Rw2G039080 Rw3G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	1 cut(s)	391
AclWI	GGATC	1 cut(s)	97
AcyI	GRCGYC	1 cut(s)	236
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	235
BauI	CACGAG	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	239
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
BmiI	GGNNCC	3 cut(s)	237, 262, 373
BpmI	CTGGAG	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	312
Bse1I	ACTGG	3 cut(s)	15, 264, 375
Bse3DI	GCAATG	2 cut(s)	357, 404
BseDI	CCNNGG	1 cut(s)	312
BseMI	GCAATG	2 cut(s)	357, 404
BseMII	CTCAG	2 cut(s)	54, 119
BseNI	ACTGG	3 cut(s)	15, 264, 375
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	175
BshNI	GGYRCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	391
BspCNI	CTCAG	2 cut(s)	53, 118
BspLI	GGNNCC	3 cut(s)	237, 262, 373
BspPI	GGATC	1 cut(s)	97
BspT107I	GGYRCC	1 cut(s)	235
BsrDI	GCAATG	2 cut(s)	357, 404
BsrI	ACTGG	3 cut(s)	15, 264, 375
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	1 cut(s)	89
BssNI	GRCGYC	1 cut(s)	236
BssSI	CACGAG	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	363
Bst4CI	ACNGT	2 cut(s)	207, 397
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	2 cut(s)	40, 105
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	1 cut(s)	92
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	175
BtsIMutI	CAGTG	4 cut(s)	8, 22, 382, 393
Cac8I	GCNNGC	1 cut(s)	168
CfoI	GCGC	1 cut(s)	238
CviAII	CATG	1 cut(s)	294
CviJI	RGCY	7 cut(s)	95, 157, 166, 202, 261, 356, 374
CviKI_1	RGCY	7 cut(s)	95, 157, 166, 202, 261, 356, 374
DdeI	CTNAG	2 cut(s)	40, 105
DinI	GGCGCC	1 cut(s)	237
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	312
EgeI	GGCGCC	1 cut(s)	237
EheI	GGCGCC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	297
FaiI	YATR	7 cut(s)	24, 123, 160, 211, 213, 276, 295
FatI	CATG	1 cut(s)	293
FauNDI	CATATG	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	164
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	239
HhaI	GCGC	1 cut(s)	238
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	1 cut(s)	297
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HinfI	GANTC	3 cut(s)	31, 101, 279
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	43, 118
Hpy188III	TCNNGA	1 cut(s)	87
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	296, 334
HpyCH4III	ACNGT	2 cut(s)	207, 397
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	40, 105
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	297
HspAI	GCGC	1 cut(s)	236
KasI	GGCGCC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	89
LmnI	GCTCC	2 cut(s)	266, 371
LpnPI	CCDG	7 cut(s)	72, 92, 180, 184, 243, 277, 388
Lsp1109I	GCAGC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	266, 400
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	2 cut(s)	128, 332
MhlI	GDGCHC	1 cut(s)	41
Mly113I	GGCGCC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	4 cut(s)	120, 226, 245, 316
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	2 cut(s)	398, 409
MwoI	GCNNNNNNNGC	1 cut(s)	163
NarI	GGCGCC	1 cut(s)	236
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	1 cut(s)	297
NlaIV	GGNNCC	3 cut(s)	237, 262, 373
NmuCI	GTSAC	1 cut(s)	400
OliI	CACNNNNGTG	1 cut(s)	398
PfeI	GAWTC	3 cut(s)	31, 101, 279
PkrI	GCNGC	1 cut(s)	165
PluTI	GGCGCC	1 cut(s)	239
PspN4I	GGNNCC	3 cut(s)	237, 262, 373
RseI	CAYNNNNRTG	2 cut(s)	398, 409
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	6 cut(s)	78, 111, 159, 225, 230, 256
SfcI	CTRYAG	1 cut(s)	96
SfoI	GGCGCC	1 cut(s)	237
SmiMI	CAYNNNNRTG	2 cut(s)	398, 409
SsiI	CCGC	1 cut(s)	391
SspDI	GGCGCC	1 cut(s)	235
SspMI	CTAG	1 cut(s)	353
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	207, 397
TaiI	ACGT	1 cut(s)	78
TfiI	GAWTC	3 cut(s)	31, 101, 279
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	4 cut(s)	15, 22, 382, 400
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	1 cut(s)	128
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	4 cut(s)	15, 22, 382, 400
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.