Rh7AG425700

GTP1/OBG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0007549
Physical Location & Seq
Reverse (-)
57188945 .. 57191323
2379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG425700.1

Sequence Viewer

Length: 660 bp
ATGGGAAGGTCGTCAACGTGTTTATCCCCCAAGATCGGAGGACCGGCGATTCAAGCAGCTTCGCTTTTGTGCGGGAGAGTTGTGGATGGGAGAGAGATTATGATTCAGTTTTCTAAGTATGGTCCAAATGCTGAAAGGATTCACAAGGGAAAGATAAGTGAATCTTCCTCCAAGTTGAAAAGCAGGTCAAGAAGCCGTAGCCCTCATCCAAGGTATCGAGATGAATACAAGGATATGGATTACAAACGGAGAAGTCGCAGTCGAAGTAGGGACAGATATGACCGTGATAGGCACCATAGGAGTGAAAGAAAGCATCGCTACAGAAGCAGGAGCCGCAATAATCGTAAAAGGAGTAAATATGATGATGAGCTACGTAATCGGAGCTGGTCCTATGGAAGCAAAAATGTGGCTGCTATGGGGGTTTTGACCTCCCAATTGAGAGATGGAGTTGTTGCCCCAACTCTGCGCATTCCTGTGCCTGTAGATACTGTTGTGAAGCGGAAACGAGGGACGCTGTTGCGTGATCTAACCCAGCCAGGTGATGAAATCCTTGTAGCGAGGGGTGGACAAGGAGGGATTAGCTTGGTAGAAATGCCAGAGCGTAGCAAGAAAAAGTTGATGGCTTTGACCACTAATGTGATGAGAGATGATAGTGATAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP1_OBG MMR_HSR1

Protein Analysis

220

Amino Acids

25.26

Weight (kDa)

10.84

Isoelectric Point (pI)

72.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP1_OBG PF01018 145 - 197 1.5e-07 GTP1/OBG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 467
Acc36I ACCTGC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 291
AciI CCGC 3 cut(s) 72, 334, 499
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 17
AgsI TTSAA 2 cut(s) 53, 178
AjnI CCWGG 1 cut(s) 535
AleI CACNNNNGTG 1 cut(s) 635
AluBI AGCT 4 cut(s) 59, 370, 384, 582
AluI AGCT 4 cut(s) 59, 370, 384, 582
ApeKI GCWGC 2 cut(s) 56, 410
Asp700I GAANNNNTTC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 3 cut(s) 41, 122, 387
AsuHPI GGTGA 1 cut(s) 551
AvaII GGWCC 3 cut(s) 41, 122, 387
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BanI GGYRCC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 68, 397
BccI CCATC 3 cut(s) 80, 437, 613
BceAI ACGGC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 537
BfmI CTRYAG 2 cut(s) 319, 480
BfuAI ACCTGC 1 cut(s) 174
BisI GCNGC 3 cut(s) 57, 334, 411
BlsI GCNGC 3 cut(s) 58, 335, 412
Bme1390I CCNGG 1 cut(s) 537
Bme18I GGWCC 3 cut(s) 41, 122, 387
BmgT120I GGNCC 3 cut(s) 41, 122, 387
BmiI GGNNCC 2 cut(s) 293, 332
BmrFI CCNGG 1 cut(s) 537
BmsI GCATC 1 cut(s) 322
BsaAI YACGTR 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 43
BseBI CCWGG 1 cut(s) 537
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 2 cut(s) 91, 205
BseLI CCNNNNNNNGG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 68, 397
BseYI CCCAGC 1 cut(s) 531
BshNI GGYRCC 1 cut(s) 291
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 2 cut(s) 284, 523
BslI CCNNNNNNNGG 1 cut(s) 35
BsmFI GGGAC 2 cut(s) 284, 523
BsmI GAATGC 1 cut(s) 468
Bsp143I GATC 2 cut(s) 33, 523
BspACI CCGC 3 cut(s) 72, 334, 499
BspLI GGNNCC 2 cut(s) 293, 332
BspMI ACCTGC 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 2 cut(s) 33, 523
BssT1I CCWWGG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 537
Bst4CI ACNGT 2 cut(s) 284, 490
BstBAI YACGTR 1 cut(s) 374
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 2 cut(s) 91, 205
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 2 cut(s) 36, 526
BstMBI GATC 2 cut(s) 33, 523
BstMWI GCNNNNNNNGC 3 cut(s) 53, 324, 333
BstNI CCWGG 1 cut(s) 537
BstSCI CCNGG 1 cut(s) 535
BstSFI CTRYAG 2 cut(s) 319, 480
BstSNI TACGTA 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 68, 397
BtgZI GCGATG 1 cut(s) 299
BtsCI GGATG 2 cut(s) 91, 205
BveI ACCTGC 1 cut(s) 174
CfoI GCGC 1 cut(s) 468
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 3 cut(s) 41, 122, 387
CseI GACGC 1 cut(s) 520
DdeI CTNAG 1 cut(s) 114
DpnI GATC 2 cut(s) 35, 525
DpnII GATC 2 cut(s) 33, 523
Eco105I TACGTA 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 209
Eco47I GGWCC 3 cut(s) 41, 122, 387
EcoRII CCWGG 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 209
FaiI YATR 8 cut(s) 101, 120, 236, 279, 297, 360, 393, 416
FalI AAGNNNNNCTT 2 cut(s) 148, 180
FaqI GGGAC 2 cut(s) 284, 523
FauI CCCGC 1 cut(s) 65
Fnu4HI GCNGC 3 cut(s) 57, 334, 411
FokI GGATG 2 cut(s) 98, 192
Fsp4HI GCNGC 3 cut(s) 57, 334, 411
FspI TGCGCA 1 cut(s) 467
GlaI GCGC 1 cut(s) 467
GluI GCNGC 3 cut(s) 57, 334, 411
GsaI CCCAGC 1 cut(s) 535
HapII CCGG 1 cut(s) 44
HgaI GACGC 1 cut(s) 520
HhaI GCGC 1 cut(s) 468
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 4 cut(s) 49, 103, 139, 161
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 551
Hpy166II GTNNAC 2 cut(s) 15, 566
Hpy188I TCNGA 2 cut(s) 38, 381
Hpy188III TCNNGA 2 cut(s) 189, 218
Hpy8I GTNNAC 2 cut(s) 15, 566
HpyCH4III ACNGT 2 cut(s) 284, 490
HpyCH4IV ACGT 2 cut(s) 17, 373
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 324, 333
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 2 cut(s) 17, 373
HspAI GCGC 1 cut(s) 466
Kzo9I GATC 2 cut(s) 33, 523
LmnI GCTCC 2 cut(s) 330, 381
Lsp1109I GCAGC 2 cut(s) 68, 397
LweI GCATC 1 cut(s) 322
MaeII ACGT 2 cut(s) 17, 373
MalI GATC 2 cut(s) 35, 525
MboI GATC 2 cut(s) 33, 523
MboII GAAGA 1 cut(s) 156
MfeI CAATTG 1 cut(s) 434
MluCI AATT 1 cut(s) 434
MnlI CCTC 7 cut(s) 32, 178, 213, 439, 500, 552, 566
MroXI GAANNNNTTC 1 cut(s) 138
MslI CAYNNNNRTG 3 cut(s) 300, 473, 635
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 537
MunI CAATTG 1 cut(s) 434
Mva1269I GAATGC 1 cut(s) 468
MvaI CCWGG 1 cut(s) 537
MwoI GCNNNNNNNGC 3 cut(s) 53, 324, 333
NdeII GATC 2 cut(s) 33, 523
NlaIV GGNNCC 2 cut(s) 293, 332
NsbI TGCGCA 1 cut(s) 467
OliI CACNNNNGTG 1 cut(s) 635
PctI GAATGC 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 4 cut(s) 49, 103, 139, 161
PkrI GCNGC 3 cut(s) 58, 335, 412
Ppu21I YACGTR 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 535
PspFI CCCAGC 1 cut(s) 531
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 2 cut(s) 293, 332
PspPI GGNCC 3 cut(s) 41, 122, 387
RseI CAYNNNNRTG 3 cut(s) 300, 473, 635
SatI GCNGC 3 cut(s) 57, 334, 411
Sau3AI GATC 2 cut(s) 33, 523
Sau96I GGNCC 3 cut(s) 41, 122, 387
ScrFI CCNGG 1 cut(s) 537
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 2 cut(s) 319, 480
SinI GGWCC 3 cut(s) 41, 122, 387
SmiMI CAYNNNNRTG 3 cut(s) 300, 473, 635
SnaBI TACGTA 1 cut(s) 374
Sse9I AATT 1 cut(s) 434
SsiI CCGC 3 cut(s) 72, 334, 499
StyD4I CCNGG 1 cut(s) 535
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 2 cut(s) 284, 490
TaiI ACGT 2 cut(s) 20, 376
TaqI TCGA 2 cut(s) 217, 262
TasI AATT 1 cut(s) 434
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 4 cut(s) 49, 103, 139, 161
TseI GCWGC 2 cut(s) 56, 410
TspDTI ATGAA 2 cut(s) 237, 558
TspGWI ACGGA 1 cut(s) 262
VpaK11BI GGWCC 3 cut(s) 41, 122, 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmnI GAANNNNTTC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.