Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002205.1

Orthogroup ID

OG0007549

Physical Location & Seq

Genomic Coordinates Forward (+)

159255 .. 161823

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002205.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atggattcaggggatgtaccacgtgttgatgggcagttggctgtagcatgggcattcggtgacaagagcttgaagaaacatttaagttctgaaccttttgtgatgtcgaagacgatagatgaagagacagagtttggtgtcttagcaagtgatggactgtggaagtcgcaattggaatcacaactcccatcctctggactttccatttatggacaagaggcttctctttcttcaatacattcttcaggacttggccgtcctggtgctcctattgttactcagattactcaaacagagcaaattcctctgtcttatgctgaggacattattggggttgaagggaggagtattgaatttattcgtcgtagtagtggagccttgttaactgtacaagagagcaggggactacctgatgaaattacagtggaaataaaaggcacctcatcacaggttcaggcggctcaacaactgattcagattagcttggtagaaatgccagagcgtagcaagaaaaagttgatggctttgaccactaatgtgatgagagatgatagtgataagggccttggattacaagttgtgaaatatttggctgccaaatatgaagagctagggtgtgaagtaaaatggatgggcaagtctgataaggtgatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

218

Amino Acids

23.69

Weight (kDa)

5.0

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007549)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145031 RchiOBHm_Chr7g0217061
rosa_laevigata	RLG00000007225
rosa_multiflora	Rmu_sc0002205.1_g000037
rosa_roxburghii	Rroxscaffold_1G00060100 Rroxscaffold_3G00222180 Rroxscaffold_4G00312300 Rroxscaffold_5G00345400 Rroxscaffold_5G00346530 Rroxscaffold_5G00367330
rosa_rugosa	Rorug02G0170400 Rorug02G0305000 Rorug03G0116400 Rorug03G0116500 Rorug03G0116600 Rorug04G0037800
rosa_samantha	Rh2DG657600 Rh3CG032400 Rh5AG068100 Rh5AG401400 Rh5AG439600 Rh5AG478200 Rh7AG425700
rosa_wichuraiana	Rw2G039080 Rw3G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	437
AccB7I	CCANNNNNTGG	1 cut(s)	194
AciI	CCGC	1 cut(s)	458
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	2 cut(s)	300, 353
AcuI	CTGAAG	1 cut(s)	228
AcvI	CACGTG	1 cut(s)	23
AfaI	GTAC	2 cut(s)	18, 390
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	22
AgsI	TTSAA	4 cut(s)	73, 234, 338, 353
AjnI	CCWGG	1 cut(s)	259
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AleI	CACNNNNGTG	1 cut(s)	536
AluBI	AGCT	3 cut(s)	69, 483, 610
AluI	AGCT	3 cut(s)	69, 483, 610
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	119
AoxI	GGCC	2 cut(s)	253, 562
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	2 cut(s)	300, 353
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	562
AsuHPI	GGTGA	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	437
BbrPI	CACGTG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	268
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	5 cut(s)	23, 146, 196, 514, 625
BceAI	ACGGC	1 cut(s)	240
BciT130I	CCWGG	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	611, 655
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	2 cut(s)	459, 594
BlsI	GCNGC	2 cut(s)	460, 595
Bme1390I	CCNGG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	562
BmiI	GGNNCC	2 cut(s)	376, 439
BmrFI	CCNGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	3 cut(s)	19, 188, 636
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	293, 309
BseRI	GAGGAG	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	580
BshFI	GGCC	2 cut(s)	255, 564
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	417
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	255, 564
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp1407I	TGTACA	1 cut(s)	388
Bsp143I	GATC	1 cut(s)	651
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	2 cut(s)	255, 564
BspCNI	CTCAG	2 cut(s)	292, 310
BspLI	GGNNCC	2 cut(s)	376, 439
BspQI	GCTCTTC	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	437
BsrGI	TGTACA	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	1 cut(s)	651
BssT1I	CCWWGG	1 cut(s)	565
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	3 cut(s)	159, 388, 424
Bst6I	CTCTTC	2 cut(s)	117, 600
BstAUI	TGTACA	1 cut(s)	388
BstBAI	YACGTR	1 cut(s)	23
BstDEI	CTNAG	3 cut(s)	142, 279, 318
BstF5I	GGATG	3 cut(s)	19, 188, 636
BstKTI	GATC	1 cut(s)	654
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	651
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	580
BstV2I	GAAGAC	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	255, 564
BtsCI	GGATG	3 cut(s)	19, 188, 636
BtsIMutI	CAGTG	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	562
Csp6I	GTAC	2 cut(s)	17, 389
CviAII	CATG	1 cut(s)	48
CviQI	GTAC	2 cut(s)	17, 389
DdeI	CTNAG	3 cut(s)	142, 279, 318
DpnI	GATC	1 cut(s)	653
DpnII	GATC	1 cut(s)	651
DrdI	GACNNNNNNGTC	1 cut(s)	255
DseDI	GACNNNNNNGTC	1 cut(s)	255
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	117, 600
EarI	CTCTTC	2 cut(s)	117, 600
Eco130I	CCWWGG	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	228
Eco72I	CACGTG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	565
FaeI	CATG	1 cut(s)	51
FaiI	YATR	4 cut(s)	49, 210, 315, 603
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	1 cut(s)	47
Fnu4HI	GCNGC	2 cut(s)	459, 594
FokI	GGATG	3 cut(s)	26, 175, 643
Fsp4HI	GCNGC	2 cut(s)	459, 594
FspBI	CTAG	2 cut(s)	611, 655
GluI	GCNGC	2 cut(s)	459, 594
HaeIII	GGCC	2 cut(s)	255, 564
Hin1II	CATG	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	3 cut(s)	5, 176, 472
HpaI	GTTAAC	1 cut(s)	384
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	4 cut(s)	91, 282, 477, 643
Hpy188III	TCNNGA	2 cut(s)	195, 246
Hpy8I	GTNNAC	1 cut(s)	384
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	3 cut(s)	159, 388, 424
HpyCH4IV	ACGT	1 cut(s)	22
HpyF3I	CTNAG	3 cut(s)	142, 279, 318
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	51
KspAI	GTTAAC	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	651
LguI	GCTCTTC	1 cut(s)	600
LmnI	GCTCC	2 cut(s)	271, 374
LpnPI	CCDG	9 cut(s)	180, 231, 246, 273, 385, 423, 434, 440, 510
Lsp1109I	GCAGC	1 cut(s)	580
MaeI	CTAG	2 cut(s)	611, 655
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	2 cut(s)	59, 274
MalI	GATC	1 cut(s)	653
MboI	GATC	1 cut(s)	651
MboII	GAAGA	6 cut(s)	85, 121, 134, 222, 234, 617
MfeI	CAATTG	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	4 cut(s)	170, 300, 353, 417
MnlI	CCTC	6 cut(s)	202, 211, 313, 315, 336, 451
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	2 cut(s)	83, 383
MslI	CAYNNNNRTG	1 cut(s)	536
MspR9I	CCNGG	1 cut(s)	261
MunI	CAATTG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	261
NdeII	GATC	1 cut(s)	651
NlaIII	CATG	1 cut(s)	51
NlaIV	GGNNCC	2 cut(s)	376, 439
NmuCI	GTSAC	1 cut(s)	59
OliI	CACNNNNGTG	1 cut(s)	536
PciSI	GCTCTTC	1 cut(s)	600
PctI	GAATGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	5, 176, 472
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	460, 595
PmaCI	CACGTG	1 cut(s)	23
PmlI	CACGTG	1 cut(s)	23
Ppu21I	YACGTR	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	259
PspCI	CACGTG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	376, 439
PspPI	GGNCC	1 cut(s)	562
RsaI	GTAC	2 cut(s)	18, 390
RsaNI	GTAC	2 cut(s)	17, 389
RseI	CAYNNNNRTG	1 cut(s)	536
SapI	GCTCTTC	1 cut(s)	600
SaqAI	TTAA	2 cut(s)	83, 383
SatI	GCNGC	2 cut(s)	459, 594
Sau3AI	GATC	1 cut(s)	651
Sau96I	GGNCC	1 cut(s)	562
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	9 cut(s)	25, 71, 97, 412, 443, 453, 485, 612, 651
SfcI	CTRYAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	536
Sse9I	AATT	4 cut(s)	170, 300, 353, 417
SsiI	CCGC	1 cut(s)	458
SspI	AATATT	1 cut(s)	587
SspMI	CTAG	2 cut(s)	611, 655
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	3 cut(s)	159, 388, 424
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	107
TasI	AATT	4 cut(s)	170, 300, 353, 417
TatI	WGTACW	1 cut(s)	388
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	3 cut(s)	5, 176, 472
Tru1I	TTAA	2 cut(s)	83, 383
Tru9I	TTAA	2 cut(s)	83, 383
TscAI	CASTG	1 cut(s)	429
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	135, 429, 618
TspRI	CASTG	1 cut(s)	429
Van91I	CCANNNNNTGG	1 cut(s)	194
XapI	RAATTY	2 cut(s)	300, 353
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	2 cut(s)	611, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.