Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007549

Physical Location & Seq

Genomic Coordinates Forward (+)

5173326 .. 5174255

Gene Structure 930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGGAGGAAGATACATTGCTGGAGTTTCATAAGAAAGGGAGGGTACAATGCGAAGTGCGGCGGAAATGTGGCTGCTATGGGGGTTTTGACCTCCCAATTGAGAGATGGAGTTGCTGCCCCCAACTCTGCGCATTCCTGTGCTGTAGGTACTATTGTGAAGCGGAAACAAGGGACGATGTTGCATGATCTAGCCCGGCCGAGTGATGAAATCCATGTAGCGAGGGCGGACAAGGAGGGCTTGGTAGAAATGCTAGAGCGTAGCAAGAAAAAGTTGATGGCTTTAACCACTAATGTGATGAGAGATGATAGTGATAAGGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATGGGCAAGCCGATAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP1_OBG MMR_HSR1

Protein Analysis

135

Amino Acids

14.9

Weight (kDa)

9.69

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007549)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145031 RchiOBHm_Chr7g0217061
rosa_laevigata	RLG00000007225
rosa_multiflora	Rmu_sc0002205.1_g000037
rosa_roxburghii	Rroxscaffold_1G00060100 Rroxscaffold_3G00222180 Rroxscaffold_4G00312300 Rroxscaffold_5G00345400 Rroxscaffold_5G00346530 Rroxscaffold_5G00367330
rosa_rugosa	Rorug02G0170400 Rorug02G0305000 Rorug03G0116400 Rorug03G0116500 Rorug03G0116600 Rorug04G0037800
rosa_samantha	Rh2DG657600 Rh3CG032400 Rh5AG068100 Rh5AG401400 Rh5AG439600 Rh5AG478200 Rh7AG425700
rosa_wichuraiana	Rw2G039080 Rw3G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	132
AciI	CCGC	4 cut(s)	60, 63, 163, 227
AcoI	YGGCCR	1 cut(s)	197
AfaI	GTAC	2 cut(s)	47, 151
AleI	CACNNNNGTG	1 cut(s)	293
AluBI	AGCT	1 cut(s)	367
AluI	AGCT	1 cut(s)	367
AoxI	GGCC	2 cut(s)	197, 319
ApeKI	GCWGC	3 cut(s)	74, 116, 350
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	319
AsuC2I	CCSGG	1 cut(s)	196
BaeI	ACNNNNGTAYC	2 cut(s)	141, 174
BbvI	GCAGC	3 cut(s)	61, 103, 337
BccI	CCATC	3 cut(s)	101, 271, 382
BcnI	CCSGG	1 cut(s)	196
BfaI	CTAG	3 cut(s)	191, 254, 368
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	4 cut(s)	61, 75, 117, 351
BlsI	GCNGC	4 cut(s)	62, 76, 118, 352
Bme1390I	CCNGG	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	196
BpmI	CTGGAG	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	322
Bse3DI	GCAATG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	1 cut(s)	393
BseMI	GCAATG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	19
BseX3I	CGGCCG	1 cut(s)	197
BseXI	GCAGC	3 cut(s)	61, 103, 337
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	2 cut(s)	199, 321
BsiEI	CGRYCG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	199, 321
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	4 cut(s)	60, 63, 163, 227
BspANI	GGCC	2 cut(s)	199, 321
BspQI	GCTCTTC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	395
BstF5I	GGATG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMCI	CGRYCG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	61, 103, 337
BstZI	CGGCCG	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	199, 321
BtsCI	GGATG	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	395
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	46, 150
CviAII	CATG	2 cut(s)	185, 215
CviJI	RGCY	9 cut(s)	74, 194, 199, 240, 281, 321, 350, 367, 397
CviKI_1	RGCY	9 cut(s)	74, 194, 199, 240, 281, 321, 350, 367, 397
CviQI	GTAC	2 cut(s)	46, 150
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	197
EagI	CGGCCG	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
EciI	GGCGGA	2 cut(s)	78, 242
EclXI	CGGCCG	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	322
Eco52I	CGGCCG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	2 cut(s)	188, 218
FaiI	YATR	5 cut(s)	32, 80, 186, 216, 360
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	2 cut(s)	184, 214
Fnu4HI	GCNGC	4 cut(s)	61, 75, 117, 351
FokI	GGATG	1 cut(s)	400
Fsp4HI	GCNGC	4 cut(s)	61, 75, 117, 351
FspBI	CTAG	3 cut(s)	191, 254, 368
FspI	TGCGCA	1 cut(s)	132
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	4 cut(s)	61, 75, 117, 351
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	199, 321
HapII	CCGG	1 cut(s)	196
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	2 cut(s)	188, 218
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	196
HpyCH4V	TGCA	1 cut(s)	184
Hsp92II	CATG	2 cut(s)	188, 218
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	357
LpnPI	CCDG	3 cut(s)	7, 151, 209
Lsp1109I	GCAGC	3 cut(s)	61, 103, 337
MaeI	CTAG	3 cut(s)	191, 254, 368
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	2 cut(s)	22, 374
MfeI	CAATTG	1 cut(s)	98
MluCI	AATT	1 cut(s)	98
MnlI	CCTC	4 cut(s)	35, 103, 216, 229
MseI	TTAA	1 cut(s)	284
MslI	CAYNNNNRTG	2 cut(s)	138, 293
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	196
MunI	CAATTG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	188, 218
NmeAIII	GCCGAG	1 cut(s)	225
NsbI	TGCGCA	1 cut(s)	132
OliI	CACNNNNGTG	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	357
PctI	GAATGC	1 cut(s)	133
PkrI	GCNGC	4 cut(s)	62, 76, 118, 352
PspPI	GGNCC	1 cut(s)	319
RsaI	GTAC	2 cut(s)	47, 151
RsaNI	GTAC	2 cut(s)	46, 150
RseI	CAYNNNNRTG	2 cut(s)	138, 293
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	4 cut(s)	61, 75, 117, 351
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	196
SetI	ASST	4 cut(s)	95, 151, 369, 407
SfcI	CTRYAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	2 cut(s)	138, 293
Sse9I	AATT	1 cut(s)	98
SsiI	CCGC	4 cut(s)	60, 63, 163, 227
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	3 cut(s)	191, 254, 368
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	322
TasI	AATT	1 cut(s)	98
TauI	GCSGC	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TseI	GCWGC	3 cut(s)	74, 116, 350
TspDTI	ATGAA	3 cut(s)	19, 222, 375
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XspI	CTAG	3 cut(s)	191, 254, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.