Rh2DG657600

GTP1/OBG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0007549
Physical Location & Seq
Forward (+)
88296703 .. 88320647
23945 bp
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UTR
Exon/CDS
Intron
Rh2DG657600.1

Sequence Viewer

Length: 390 bp
ATGGGGGTTTTGACCTCCCAATTGAGAGATGGAGTTGCTTCCCCAACTCTGCGCATTCCTGTGCCTGTAGGTACTGTTGTGAAGCGGAAACGAGGGACGCTGTTGCGTGATCTAGCCCAGCCAGGTGATGAAATCCTTGTAGCGAGGGCTGGACAAGGAGGGATTAGCTTGGTAAAAATGCCAGAGCGTAGCAGGAAAAAGTTGATGGCTTTGACCACTAATGTGATGAGAGATGATAGTGATAAGGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATGGGCAAGCCTGATAAGTCAACCGCCGCGTCAGGGTCAAGATTGTGTCAACCGCCATGCTCAAGACAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP1_OBG MMR_HSR1

Protein Analysis

129

Amino Acids

13.96

Weight (kDa)

9.84

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP1_OBG PF01018 8 - 62 4.7e-08 GTP1/OBG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 53
AccII CGCG 1 cut(s) 344
AciI CCGC 4 cut(s) 85, 339, 342, 368
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 348
AjnI CCWGG 1 cut(s) 121
AleI CACNNNNGTG 1 cut(s) 221
AluBI AGCT 2 cut(s) 168, 295
AluI AGCT 2 cut(s) 168, 295
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 137
BaeI ACNNNNGTAYC 2 cut(s) 63, 96
BbvI GCAGC 1 cut(s) 265
BccI CCATC 3 cut(s) 23, 199, 310
BciT130I CCWGG 1 cut(s) 123
BfaI CTAG 2 cut(s) 113, 296
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 2 cut(s) 279, 342
BlsI GCNGC 2 cut(s) 280, 343
Bme1390I CCNGG 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 348
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 265
BseYI CCCAGC 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 344
BshFI GGCC 1 cut(s) 249
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 109
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 1 cut(s) 249
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 4 cut(s) 85, 339, 342, 368
BspANI GGCC 1 cut(s) 249
BspFNI CGCG 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 323
BstF5I GGATG 1 cut(s) 321
BstFNI CGCG 1 cut(s) 344
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 66
BstUI CGCG 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 265
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 323
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 247
CseI GACGC 2 cut(s) 106, 333
Csp6I GTAC 1 cut(s) 72
CviAII CATG 1 cut(s) 372
CviJI RGCY 9 cut(s) 116, 121, 149, 168, 209, 249, 278, 295, 325
CviKI_1 RGCY 9 cut(s) 116, 121, 149, 168, 209, 249, 278, 295, 325
CviQI GTAC 1 cut(s) 72
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 375
FaiI YATR 2 cut(s) 288, 373
FaqI GGGAC 1 cut(s) 109
FatI CATG 1 cut(s) 371
Fnu4HI GCNGC 2 cut(s) 279, 342
FokI GGATG 1 cut(s) 328
Fsp4HI GCNGC 2 cut(s) 279, 342
FspBI CTAG 2 cut(s) 113, 296
FspI TGCGCA 1 cut(s) 53
GlaI GCGC 1 cut(s) 53
GluI GCNGC 2 cut(s) 279, 342
GsaI CCCAGC 1 cut(s) 121
HaeIII GGCC 1 cut(s) 249
HgaI GACGC 2 cut(s) 106, 333
HhaI GCGC 1 cut(s) 54
Hin1II CATG 1 cut(s) 375
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HincII GTYRAC 2 cut(s) 336, 365
HindII GTYRAC 2 cut(s) 336, 365
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 2 cut(s) 336, 365
Hpy188III TCNNGA 2 cut(s) 354, 378
Hpy8I GTNNAC 2 cut(s) 336, 365
HpyCH4III ACNGT 1 cut(s) 76
Hsp92II CATG 1 cut(s) 375
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 109
LguI GCTCTTC 1 cut(s) 285
Lsp1109I GCAGC 1 cut(s) 265
MaeI CTAG 2 cut(s) 113, 296
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 302
MfeI CAATTG 1 cut(s) 20
MluCI AATT 1 cut(s) 20
MnlI CCTC 4 cut(s) 25, 86, 138, 152
MslI CAYNNNNRTG 2 cut(s) 59, 221
MspR9I CCNGG 1 cut(s) 123
MunI CAATTG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 54
MvaI CCWGG 1 cut(s) 123
MvnI CGCG 1 cut(s) 344
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 375
NsbI TGCGCA 1 cut(s) 53
OliI CACNNNNGTG 1 cut(s) 221
PciSI GCTCTTC 1 cut(s) 285
PctI GAATGC 1 cut(s) 54
PkrI GCNGC 2 cut(s) 280, 343
Psp6I CCWGG 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 117
PspGI CCWGG 1 cut(s) 121
PspPI GGNCC 1 cut(s) 247
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 2 cut(s) 59, 221
SapI GCTCTTC 1 cut(s) 285
SatI GCNGC 2 cut(s) 279, 342
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 247
ScrFI CCNGG 1 cut(s) 123
SetI ASST 5 cut(s) 17, 73, 127, 170, 297
SfcI CTRYAG 1 cut(s) 66
SmiMI CAYNNNNRTG 2 cut(s) 59, 221
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
Sse9I AATT 1 cut(s) 20
SsiI CCGC 4 cut(s) 85, 339, 342, 368
SspI AATATT 1 cut(s) 272
SspMI CTAG 2 cut(s) 113, 296
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 76
TasI AATT 1 cut(s) 20
TauI GCSGC 1 cut(s) 344
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 2 cut(s) 144, 303
XcmI CCANNNNNNNNNTGG 1 cut(s) 26
XspI CTAG 2 cut(s) 113, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.