Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007549

Physical Location & Seq

Genomic Coordinates Reverse (-)

64058512 .. 64059813

Gene Structure 1302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G039080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTGGTGGAGGCCACAGCTGCACAAAATTCATAACCTTCATGTAATAAACATGAGGAAGGGAATCAGCAAAAACAGAAGAAGAAGATGCCATGACAACAATTATAGGACCATAATTGATAAGGTGAATATATACATTGTTAAGGGCCTGAACCATAATCTGGATCAATTTTACCTCCTCATTCAGTTTCATTTGAAGTTATTGATTCTGGTGAGAAATCCGTGTGACACAAAAGCTGTATCTGATCTCAAAGGGTATTGTAAAGACAGATTACGCAAACAATGCAAATTCATGTCTTATGCTGAGGACATTATTGGGGTTGAAGGAAGGAGTATTGAATTTATTCGTCGTAGTAGTGGAGCCTTGTTAACTGTACAAGAGAGCAGGGGACTACCTGATGAAATTACAATGGAAATAAAAGGCACCTCATCACAGGTTCAGGCGGCTCAACAACTGATTCAGGAAGTTATAGCAACCAGCAACAAGGATCAAATTCCAAGCAGCTATGGCAGGATGGATACCGGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

176

Amino Acids

20.45

Weight (kDa)

9.72

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	100 - 155	4e-08	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007549)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145031 RchiOBHm_Chr7g0217061
rosa_laevigata	RLG00000007225
rosa_multiflora	Rmu_sc0002205.1_g000037
rosa_roxburghii	Rroxscaffold_1G00060100 Rroxscaffold_3G00222180 Rroxscaffold_4G00312300 Rroxscaffold_5G00345400 Rroxscaffold_5G00346530 Rroxscaffold_5G00367330
rosa_rugosa	Rorug02G0170400 Rorug02G0305000 Rorug03G0116400 Rorug03G0116500 Rorug03G0116600 Rorug04G0037800
rosa_samantha	Rh2DG657600 Rh3CG032400 Rh5AG068100 Rh5AG401400 Rh5AG439600 Rh5AG478200 Rh7AG425700
rosa_wichuraiana	Rw2G039080 Rw3G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	422
AccB7I	CCANNNNNTGG	1 cut(s)	160
AciI	CCGC	1 cut(s)	443
AclWI	GGATC	2 cut(s)	171, 495
AcsI	RAATTY	4 cut(s)	27, 287, 338, 492
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	196, 323, 338
AluBI	AGCT	3 cut(s)	19, 236, 504
AluI	AGCT	3 cut(s)	19, 236, 504
AlwI	GGATC	2 cut(s)	171, 495
AoxI	GGCC	2 cut(s)	11, 145
ApeKI	GCWGC	2 cut(s)	19, 501
ApoI	RAATTY	4 cut(s)	27, 287, 338, 492
Asp700I	GAANNNNTTC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	108, 145
AsuHPI	GGTGA	2 cut(s)	136, 223
AvaII	GGWCC	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	422
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	6, 513
BccI	CCATC	1 cut(s)	508
BciVI	GTATCC	1 cut(s)	511
BfuI	GTATCC	1 cut(s)	511
BisI	GCNGC	3 cut(s)	20, 444, 502
BlsI	GCNGC	3 cut(s)	21, 445, 503
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	2 cut(s)	108, 145
BmiI	GGNNCC	2 cut(s)	361, 424
BmsI	GCATC	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	519
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	6, 513
BsgI	GTGCAG	1 cut(s)	5
BshFI	GGCC	2 cut(s)	13, 147
BshNI	GGYRCC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	2 cut(s)	13, 147
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	163, 244, 487
BspACI	CCGC	1 cut(s)	443
BspANI	GGCC	2 cut(s)	13, 147
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	361, 424
BspPI	GGATC	2 cut(s)	171, 495
BspT107I	GGYRCC	1 cut(s)	422
BsrGI	TGTACA	1 cut(s)	373
BssMI	GATC	3 cut(s)	163, 244, 487
Bst4CI	ACNGT	1 cut(s)	373
BstAPI	GCANNNNNTGC	1 cut(s)	282
BstAUI	TGTACA	1 cut(s)	373
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	519
BstKTI	GATC	3 cut(s)	166, 247, 490
BstMBI	GATC	3 cut(s)	163, 244, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 282, 507
BstV1I	GCAGC	2 cut(s)	6, 513
BsuI	GTATCC	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	13, 147
BtsCI	GGATG	1 cut(s)	519
Cfr13I	GGNCC	2 cut(s)	108, 145
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	4 cut(s)	41, 52, 92, 292
CviJI	RGCY	7 cut(s)	13, 19, 147, 236, 362, 446, 504
CviKI_1	RGCY	7 cut(s)	13, 19, 147, 236, 362, 446, 504
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	3 cut(s)	165, 246, 489
DpnII	GATC	3 cut(s)	163, 244, 487
Eco47I	GGWCC	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	145
FaeI	CATG	4 cut(s)	44, 55, 95, 295
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	4 cut(s)	40, 51, 91, 291
Fnu4HI	GCNGC	3 cut(s)	20, 444, 502
FokI	GGATG	1 cut(s)	526
Fsp4HI	GCNGC	3 cut(s)	20, 444, 502
GluI	GCNGC	3 cut(s)	20, 444, 502
HaeIII	GGCC	2 cut(s)	13, 147
HapII	CCGG	1 cut(s)	522
Hin1II	CATG	4 cut(s)	44, 55, 95, 295
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HinfI	GANTC	3 cut(s)	63, 205, 457
HpaI	GTTAAC	1 cut(s)	369
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	2 cut(s)	136, 223
Hpy166II	GTNNAC	1 cut(s)	369
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	2 cut(s)	161, 461
Hpy8I	GTNNAC	1 cut(s)	369
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	4 cut(s)	47, 52, 317, 321
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4V	TGCA	2 cut(s)	22, 285
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 282, 507
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	4 cut(s)	44, 55, 95, 295
KspAI	GTTAAC	1 cut(s)	369
Kzo9I	GATC	3 cut(s)	163, 244, 487
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	2 cut(s)	6, 513
LweI	GCATC	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	3 cut(s)	165, 246, 489
MboI	GATC	3 cut(s)	163, 244, 487
MboII	GAAGA	3 cut(s)	90, 93, 96
MluCI	AATT	8 cut(s)	27, 100, 114, 167, 287, 338, 402, 492
MnlI	CCTC	6 cut(s)	3, 48, 185, 188, 298, 436
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	2 cut(s)	141, 368
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	1 cut(s)	522
MwoI	GCNNNNNNNGC	3 cut(s)	19, 282, 507
NdeII	GATC	3 cut(s)	163, 244, 487
NlaIII	CATG	4 cut(s)	44, 55, 95, 295
NlaIV	GGNNCC	2 cut(s)	361, 424
NmuCI	GTSAC	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	3 cut(s)	63, 205, 457
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	3 cut(s)	21, 445, 503
PspN4I	GGNNCC	2 cut(s)	361, 424
PspPI	GGNCC	2 cut(s)	108, 145
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	141, 368
SatI	GCNGC	3 cut(s)	20, 444, 502
Sau3AI	GATC	3 cut(s)	163, 244, 487
Sau96I	GGNCC	2 cut(s)	108, 145
SetI	ASST	9 cut(s)	21, 39, 126, 177, 238, 397, 428, 438, 506
SfaNI	GCATC	1 cut(s)	77
SinI	GGWCC	1 cut(s)	108
Sse9I	AATT	8 cut(s)	27, 100, 114, 167, 287, 338, 402, 492
SsiI	CCGC	1 cut(s)	443
TaaI	ACNGT	1 cut(s)	373
TasI	AATT	8 cut(s)	27, 100, 114, 167, 287, 338, 402, 492
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	3 cut(s)	63, 205, 457
Tru1I	TTAA	2 cut(s)	141, 368
Tru9I	TTAA	2 cut(s)	141, 368
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	2 cut(s)	19, 501
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	5 cut(s)	20, 29, 179, 280, 414
TspGWI	ACGGA	1 cut(s)	210
Van91I	CCANNNNNTGG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	108
XapI	RAATTY	4 cut(s)	27, 287, 338, 492
XmnI	GAANNNNTTC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.