Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003547

Physical Location & Seq

Genomic Coordinates Reverse (-)

62306882 .. 62309425

Gene Structure 2544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGGGTTAAGAATAATCCTGCCGCCTTGCTTGCTTTATGCTGGTATTGGGCTACTGATGGATTGGGATCCAAGGATATGGTTGTTCTTCCTTACAGGGACAGCCTATTATTATTTAGTCGGTATTTGCAGCAGTTGGTCATGGAATCTATTGGGAAAGAATTTGACCTTGATGGTAATCAGGTGAATCAAAGACTTACAGTGTACGGAAACAAAGGGAGCACGGATCAGCATGCATACATCCAACAACTGAGAGATGGCGTGCACAATTTCTTTGTGACATTCATTGAAGTACTACGAGATAGGCCTCCTGGTCATGATTGGGAGCTTGAACCAGGTGTCACATGTGGTGACTATCTATTTGGAATGCTACAGATCTGTAGCTGTAAAGAGCCTGTTGAGCCATTGACACTAGATGAAGTAGCCGATCGGTGCCACGCTGCTGAAGATGTATTACCAGTTTTTTGTTTCCAATCCTTTTTTTTTTCTAAACCCATTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

167

Amino Acids

19.07

Weight (kDa)

4.86

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGI	PF00342	5 - 100	3.2e-14	Phosphoglucose isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24620 AT4G24620
fragaria_vesca	FvH4_5g35680 FvH4_5g35680
malus_domestica	MD08G1194100.v1.1 MD15G1382200.v1.1
prunus_persica	Prupe.1G528400_v2.0.a1 Prupe.1G528400_v2.0.a1
pyrus_communis	pycom15g34220
rosa_chinensis	RchiOBHm_Chr7g0237251 RchiOBHm_Chr7g0237271 RchiOBHm_Chr7g0237281 RchiOBHm_Chr7g0237311 RchiOBHm_Chr7g0237321
rosa_laevigata	RLG00000001012 RLG00000001018
rosa_multiflora	Rmu_sc0002923.1_g000043 Rmu_sc0002923.1_g000049 Rmu_sc0006438.1_g000001 Rmu_sc0006438.1_g000006 Rmu_sc0006438.1_g000007
rosa_roxburghii	Rroxscaffold_3G00224320
rosa_rugosa	Rorug07G0302600 Rorug07G0302700
rosa_samantha	Rh7AG459300 Rh7AG459500 Rh7AG459600 Rh7AG459700 Rh7AG459800 Rh7BG429700 Rh7CG477100 Rh7DG446400
rosa_wichuraiana	Rw0G003870 Rw7G038060 Rw7G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	432
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	3 cut(s)	63, 76, 234
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	2 cut(s)	206, 294
AflIII	ACRYGT	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	290, 332
AjnI	CCWGG	2 cut(s)	310, 334
AluBI	AGCT	2 cut(s)	328, 384
AluI	AGCT	2 cut(s)	328, 384
Alw21I	GWGCWC	2 cut(s)	224, 267
Alw44I	GTGCAC	1 cut(s)	263
AlwI	GGATC	3 cut(s)	63, 76, 234
AoxI	GGCC	1 cut(s)	305
ApaLI	GTGCAC	1 cut(s)	263
ApeKI	GCWGC	2 cut(s)	130, 440
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AsuHPI	GGTGA	2 cut(s)	196, 362
BaeGI	GKGCMC	1 cut(s)	267
BamHI	GGATCC	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	432
BarI	GAAGNNNNNNTAC	2 cut(s)	438, 470
Bbv12I	GWGCWC	2 cut(s)	224, 267
BbvI	GCAGC	2 cut(s)	142, 427
BccI	CCATC	3 cut(s)	53, 167, 251
BciT130I	CCWGG	2 cut(s)	312, 336
BfaI	CTAG	1 cut(s)	413
BfmI	CTRYAG	2 cut(s)	371, 379
BglII	AGATCT	1 cut(s)	375
BisI	GCNGC	3 cut(s)	24, 131, 441
BlsI	GCNGC	3 cut(s)	25, 132, 442
BmcAI	AGTACT	1 cut(s)	294
Bme1390I	CCNGG	2 cut(s)	312, 336
BmiI	GGNNCC	2 cut(s)	70, 434
BmrFI	CCNGG	2 cut(s)	312, 336
BsaBI	GATNNNNATC	2 cut(s)	67, 177
BsaJI	CCNNGG	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	458
Bse8I	GATNNNNATC	2 cut(s)	67, 177
BseBI	CCWGG	2 cut(s)	312, 336
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	240
BseJI	GATNNNNATC	2 cut(s)	67, 177
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	458
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	142, 427
Bsh1285I	CGRYCG	1 cut(s)	430
BshFI	GGCC	1 cut(s)	307
BshNI	GGYRCC	1 cut(s)	432
BsiEI	CGRYCG	1 cut(s)	430
BsiHKAI	GWGCWC	2 cut(s)	224, 267
BslFI	GGGAC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	307
Bsp1286I	GDGCHC	2 cut(s)	224, 267
Bsp143I	GATC	4 cut(s)	68, 226, 375, 427
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	307
BspCNI	CTCAG	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	70, 434
BspPI	GGATC	3 cut(s)	63, 76, 234
BspT107I	GGYRCC	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	4 cut(s)	68, 226, 375, 427
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	312, 336
Bst4CI	ACNGT	1 cut(s)	202
BstC8I	GCNNGC	3 cut(s)	33, 234, 263
BstDEI	CTNAG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	240
BstKTI	GATC	4 cut(s)	71, 229, 378, 430
BstMBI	GATC	4 cut(s)	68, 226, 375, 427
BstMCI	CGRYCG	1 cut(s)	430
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 400
BstNI	CCWGG	2 cut(s)	312, 336
BstNSI	RCATGY	2 cut(s)	236, 348
BstSCI	CCNGG	2 cut(s)	310, 334
BstSFI	CTRYAG	2 cut(s)	371, 379
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	142, 427
BstX2I	RGATCY	2 cut(s)	68, 375
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	2 cut(s)	68, 375
BsuRI	GGCC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	3 cut(s)	33, 234, 263
CciI	TCATGA	1 cut(s)	316
CsiI	ACCWGGT	1 cut(s)	334
Csp6I	GTAC	2 cut(s)	205, 293
CviAII	CATG	4 cut(s)	142, 233, 317, 345
CviJI	RGCY	8 cut(s)	53, 105, 307, 328, 384, 394, 403, 425
CviKI_1	RGCY	8 cut(s)	53, 105, 307, 328, 384, 394, 403, 425
CviQI	GTAC	2 cut(s)	205, 293
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	4 cut(s)	70, 228, 377, 429
DpnII	GATC	4 cut(s)	68, 226, 375, 427
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	465
EcoRII	CCWGG	2 cut(s)	310, 334
EcoT14I	CCWWGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	4 cut(s)	145, 236, 320, 348
FaiI	YATR	7 cut(s)	40, 80, 143, 234, 238, 318, 346
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	4 cut(s)	141, 232, 316, 344
Fnu4HI	GCNGC	3 cut(s)	24, 131, 441
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	3 cut(s)	24, 131, 441
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	3 cut(s)	24, 131, 441
HaeIII	GGCC	1 cut(s)	307
Hin1II	CATG	4 cut(s)	145, 236, 320, 348
HinfI	GANTC	2 cut(s)	146, 187
HphI	GGTGA	2 cut(s)	196, 362
Hpy166II	GTNNAC	2 cut(s)	205, 265
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	2 cut(s)	205, 265
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	3 cut(s)	130, 236, 265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 400
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	4 cut(s)	145, 236, 320, 348
Kzo9I	GATC	4 cut(s)	68, 226, 375, 427
LmnI	GCTCC	2 cut(s)	219, 325
Lsp1109I	GCAGC	2 cut(s)	142, 427
MabI	ACCWGGT	1 cut(s)	334
MaeI	CTAG	1 cut(s)	413
MaeIII	GTNAC	3 cut(s)	277, 340, 350
MalI	GATC	4 cut(s)	70, 228, 377, 429
MboI	GATC	4 cut(s)	68, 226, 375, 427
MboII	GAAGA	2 cut(s)	80, 458
MflI	RGATCY	2 cut(s)	68, 375
MhlI	GDGCHC	2 cut(s)	224, 267
MluCI	AATT	2 cut(s)	161, 268
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	1 cut(s)	318
Mph1103I	ATGCAT	1 cut(s)	238
MseI	TTAA	1 cut(s)	9
MspR9I	CCNGG	2 cut(s)	312, 336
Mva1269I	GAATGC	1 cut(s)	372
MvaI	CCWGG	2 cut(s)	312, 336
MwoI	GCNNNNNNNGC	2 cut(s)	32, 400
NdeII	GATC	4 cut(s)	68, 226, 375, 427
NlaIII	CATG	4 cut(s)	145, 236, 320, 348
NlaIV	GGNNCC	2 cut(s)	70, 434
NmuCI	GTSAC	3 cut(s)	277, 340, 350
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	2 cut(s)	236, 348
PaeI	GCATGC	1 cut(s)	236
PagI	TCATGA	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	307
PciI	ACATGT	1 cut(s)	344
PctI	GAATGC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	146, 187
PkrI	GCNGC	3 cut(s)	25, 132, 442
Ple19I	CGATCG	1 cut(s)	430
PscI	ACATGT	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	310, 334
PspGI	CCWGG	2 cut(s)	310, 334
PspN4I	GGNNCC	2 cut(s)	70, 434
PsuI	RGATCY	2 cut(s)	68, 375
PvuI	CGATCG	1 cut(s)	430
RsaI	GTAC	2 cut(s)	206, 294
RsaNI	GTAC	2 cut(s)	205, 293
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	3 cut(s)	24, 131, 441
Sau3AI	GATC	4 cut(s)	68, 226, 375, 427
ScaI	AGTACT	1 cut(s)	294
ScrFI	CCNGG	2 cut(s)	312, 336
SduI	GDGCHC	2 cut(s)	224, 267
SetI	ASST	5 cut(s)	171, 186, 330, 340, 386
SexAI	ACCWGGT	1 cut(s)	334
SfcI	CTRYAG	2 cut(s)	371, 379
SphI	GCATGC	1 cut(s)	236
Sse9I	AATT	2 cut(s)	161, 268
SseBI	AGGCCT	1 cut(s)	307
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	413
StuI	AGGCCT	1 cut(s)	307
StyD4I	CCNGG	2 cut(s)	310, 334
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	202
TasI	AATT	2 cut(s)	161, 268
TatI	WGTACW	1 cut(s)	292
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	146, 187
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	3 cut(s)	277, 340, 350
TseI	GCWGC	2 cut(s)	130, 440
Tsp45I	GTSAC	3 cut(s)	277, 340, 350
TspDTI	ATGAA	2 cut(s)	274, 432
TspGWI	ACGGA	2 cut(s)	222, 239
TspRI	CASTG	1 cut(s)	207
VneI	GTGCAC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	2 cut(s)	236, 348
XspI	CTAG	1 cut(s)	413
ZrmI	AGTACT	1 cut(s)	294
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.