Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006438.1

Orthogroup ID

OG0003547

Physical Location & Seq

Genomic Coordinates Reverse (-)

39131 .. 42253

Gene Structure 3123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006438.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgtctgcagttggtcttcttccagcagcgcttcaggttaagaataatcctgccgccttgcttgctttatgctggtattggggtactgatggattgggatccaaggatatggttgttcttccttacatggacagcctattattatttagtcggtatttgcagcagttggtcatggaacctattgggaaagaatttgaccttgatagtaatcgggtgaatcaaggacttacagtgtacggaaataaagggagcacggatcagcatgcatacatccaacaactgagagatggcgtgcacaatttctttgtgaaattcattgaagtactacgagataggcctcctggtcatgattgggagcttgaaccaggtgtcacatgtggtgactatctatttggaatgctacagggaacacgatcggctctttattctaatgaccgagagtcgattacggtttctgtggaagaagtgacacctagatctgtaggtgctcttatagcactttatgagagagcggttgggatttatgcctcacttgtcaacattaatgcttaccatcaacctggtgtggaggcagggaagaaagcagccggagaagtattagctcttcataaacgggttttatccgtagttaatgaggccagctgtaaagagcctgttgagccattgacactagatgaagtagccgatcggtgccgcgctgctgaagatattgaaatgatttacaagatcatcgctcacatggcggcaaatgacagagctcttattgctgaaggcagttgcggttcaccacggagtgtcaaagttttcctcggcgagtgtaatgtggaggcattatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

279

Amino Acids

30.64

Weight (kDa)

5.12

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24620 AT4G24620
fragaria_vesca	FvH4_5g35680 FvH4_5g35680
malus_domestica	MD08G1194100.v1.1 MD15G1382200.v1.1
prunus_persica	Prupe.1G528400_v2.0.a1 Prupe.1G528400_v2.0.a1
pyrus_communis	pycom15g34220
rosa_chinensis	RchiOBHm_Chr7g0237251 RchiOBHm_Chr7g0237271 RchiOBHm_Chr7g0237281 RchiOBHm_Chr7g0237311 RchiOBHm_Chr7g0237321
rosa_laevigata	RLG00000001012 RLG00000001018
rosa_multiflora	Rmu_sc0002923.1_g000043 Rmu_sc0002923.1_g000049 Rmu_sc0006438.1_g000001 Rmu_sc0006438.1_g000006 Rmu_sc0006438.1_g000007
rosa_roxburghii	Rroxscaffold_3G00224320
rosa_rugosa	Rorug07G0302600 Rorug07G0302700
rosa_samantha	Rh7AG459300 Rh7AG459500 Rh7AG459600 Rh7AG459700 Rh7AG459800 Rh7BG429700 Rh7CG477100 Rh7DG446400
rosa_wichuraiana	Rw0G003870 Rw7G038060 Rw7G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	690
AccBSI	CCGCTC	1 cut(s)	512
AccII	CGCG	1 cut(s)	696
AciI	CCGC	5 cut(s)	54, 512, 694, 743, 780
AclWI	GGATC	3 cut(s)	93, 106, 264
AcsI	RAATTY	2 cut(s)	191, 311
AcuI	CTGAAG	3 cut(s)	17, 723, 789
AdeI	CACNNNGTG	1 cut(s)	794
AfaI	GTAC	3 cut(s)	85, 236, 324
AfeI	AGCGCT	1 cut(s)	30
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	3 cut(s)	320, 362, 713
AhdI	GACNNNNNGTC	1 cut(s)	439
AjnI	CCWGG	3 cut(s)	340, 364, 559
AluBI	AGCT	4 cut(s)	358, 602, 642, 758
AluI	AGCT	4 cut(s)	358, 602, 642, 758
Alw21I	GWGCWC	4 cut(s)	254, 297, 490, 760
Alw44I	GTGCAC	1 cut(s)	293
AlwI	GGATC	3 cut(s)	93, 106, 264
Aor51HI	AGCGCT	1 cut(s)	30
AoxI	GGCC	2 cut(s)	335, 636
ApaLI	GTGCAC	1 cut(s)	293
ApeKI	GCWGC	4 cut(s)	26, 160, 584, 698
ApoI	RAATTY	2 cut(s)	191, 311
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AseI	ATTAAT	1 cut(s)	543
AspLEI	GCGC	2 cut(s)	31, 698
AsuHPI	GGTGA	3 cut(s)	226, 392, 777
BaeGI	GKGCMC	1 cut(s)	297
BamHI	GGATCC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	690
BanII	GRGCYC	1 cut(s)	760
BarI	GAAGNNNNNNTAC	2 cut(s)	588, 620
BbsI	GAAGAC	1 cut(s)	8
Bbv12I	GWGCWC	4 cut(s)	254, 297, 490, 760
BbvI	GCAGC	4 cut(s)	38, 172, 596, 685
BccI	CCATC	3 cut(s)	83, 281, 561
BciT130I	CCWGG	3 cut(s)	342, 366, 561
BfaI	CTAG	2 cut(s)	474, 671
BfmI	CTRYAG	3 cut(s)	6, 401, 480
BfoI	RGCGCY	1 cut(s)	32
BglII	AGATCT	1 cut(s)	476
BisI	GCNGC	7 cut(s)	27, 54, 161, 585, 694, 699, 744
BlsI	GCNGC	7 cut(s)	28, 55, 162, 586, 695, 700, 745
BmcAI	AGTACT	1 cut(s)	324
Bme1390I	CCNGG	3 cut(s)	342, 366, 561
BmeRI	GACNNNNNGTC	1 cut(s)	439
BmiI	GGNNCC	3 cut(s)	100, 177, 692
BmrFI	CCNGG	3 cut(s)	342, 366, 561
BpiI	GAAGAC	1 cut(s)	8
BsaBI	GATNNNNATC	2 cut(s)	97, 207
BsaJI	CCNNGG	3 cut(s)	102, 788, 808
Bse8I	GATNNNNATC	2 cut(s)	97, 207
BseBI	CCWGG	3 cut(s)	342, 366, 561
BseDI	CCNNGG	3 cut(s)	102, 788, 808
BseGI	GGATG	1 cut(s)	270
BseJI	GATNNNNATC	2 cut(s)	97, 207
BseMII	CTCAG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	4 cut(s)	38, 172, 596, 685
Bsh1236I	CGCG	1 cut(s)	696
Bsh1285I	CGRYCG	2 cut(s)	416, 688
BshFI	GGCC	2 cut(s)	337, 638
BshNI	GGYRCC	1 cut(s)	690
BsiEI	CGRYCG	2 cut(s)	416, 688
BsiHKAI	GWGCWC	4 cut(s)	254, 297, 490, 760
BsiSI	CCGG	1 cut(s)	588
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	2 cut(s)	337, 638
Bsp1286I	GDGCHC	4 cut(s)	254, 297, 490, 760
Bsp143I	GATC	6 cut(s)	98, 256, 413, 476, 685, 726
BspACI	CCGC	5 cut(s)	54, 512, 694, 743, 780
BspANI	GGCC	2 cut(s)	337, 638
BspCNI	CTCAG	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	696
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	3 cut(s)	100, 177, 692
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	3 cut(s)	93, 106, 264
BspQI	GCTCTTC	1 cut(s)	609
BspT107I	GGYRCC	1 cut(s)	690
BsrBI	CCGCTC	1 cut(s)	512
BssECI	CCNNGG	3 cut(s)	102, 788, 808
BssMI	GATC	6 cut(s)	98, 256, 413, 476, 685, 726
BssT1I	CCWWGG	1 cut(s)	102
Bst2UI	CCWGG	3 cut(s)	342, 366, 561
Bst4CI	ACNGT	2 cut(s)	232, 451
Bst6I	CTCTTC	1 cut(s)	609
BstC8I	GCNNGC	4 cut(s)	63, 264, 293, 640
BstDEI	CTNAG	1 cut(s)	281
BstDSI	CCRYGG	1 cut(s)	788
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	696
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	2 cut(s)	31, 698
BstKTI	GATC	6 cut(s)	101, 259, 416, 479, 688, 729
BstMBI	GATC	6 cut(s)	98, 256, 413, 476, 685, 726
BstMCI	CGRYCG	2 cut(s)	416, 688
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 494, 658, 740, 764
BstNI	CCWGG	3 cut(s)	342, 366, 561
BstNSI	RCATGY	2 cut(s)	266, 378
BstSCI	CCNGG	3 cut(s)	340, 364, 559
BstSFI	CTRYAG	3 cut(s)	6, 401, 480
BstSLI	GKGCMC	1 cut(s)	297
BstUI	CGCG	1 cut(s)	696
BstV1I	GCAGC	4 cut(s)	38, 172, 596, 685
BstV2I	GAAGAC	1 cut(s)	8
BstX2I	RGATCY	2 cut(s)	98, 476
BstXI	CCANNNNNNTGG	2 cut(s)	109, 560
BstYI	RGATCY	2 cut(s)	98, 476
BsuRI	GGCC	2 cut(s)	337, 638
BtgI	CCRYGG	1 cut(s)	788
BtgZI	GCGATG	1 cut(s)	715
BtsCI	GGATG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	4 cut(s)	63, 264, 293, 640
CciI	TCATGA	1 cut(s)	346
CfoI	GCGC	2 cut(s)	31, 698
CsiI	ACCWGGT	2 cut(s)	364, 559
Csp6I	GTAC	3 cut(s)	84, 235, 323
CviAII	CATG	6 cut(s)	127, 172, 263, 347, 375, 739
CviQI	GTAC	3 cut(s)	84, 235, 323
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	6 cut(s)	100, 258, 415, 478, 687, 728
DpnII	GATC	6 cut(s)	98, 256, 413, 476, 685, 726
DraIII	CACNNNGTG	1 cut(s)	794
DriI	GACNNNNNGTC	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	609
Eam1105I	GACNNNNNGTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	609
Ecl136II	GAGCTC	1 cut(s)	758
Eco130I	CCWWGG	1 cut(s)	102
Eco147I	AGGCCT	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	760
Eco47III	AGCGCT	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	758
Eco57I	CTGAAG	3 cut(s)	17, 723, 789
EcoICRI	GAGCTC	1 cut(s)	758
EcoRII	CCWGG	3 cut(s)	340, 364, 559
EcoT14I	CCWWGG	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	760
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	6 cut(s)	130, 175, 266, 350, 378, 742
FatI	CATG	6 cut(s)	126, 171, 262, 346, 374, 738
Fnu4HI	GCNGC	7 cut(s)	27, 54, 161, 585, 694, 699, 744
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	760
Fsp4HI	GCNGC	7 cut(s)	27, 54, 161, 585, 694, 699, 744
FspBI	CTAG	2 cut(s)	474, 671
GlaI	GCGC	2 cut(s)	30, 697
GluI	GCNGC	7 cut(s)	27, 54, 161, 585, 694, 699, 744
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	337, 638
HapII	CCGG	1 cut(s)	588
HhaI	GCGC	2 cut(s)	31, 698
Hin1II	CATG	6 cut(s)	130, 175, 266, 350, 378, 742
Hin6I	GCGC	2 cut(s)	29, 696
HinP1I	GCGC	2 cut(s)	29, 696
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	2 cut(s)	217, 440
HpaII	CCGG	1 cut(s)	588
HphI	GGTGA	3 cut(s)	226, 392, 777
Hpy166II	GTNNAC	4 cut(s)	235, 295, 538, 785
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	4 cut(s)	235, 295, 538, 785
HpyAV	CCTTC	1 cut(s)	764
HpyCH4III	ACNGT	2 cut(s)	232, 451
HpyCH4V	TGCA	4 cut(s)	8, 160, 266, 295
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 494, 658, 740, 764
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	6 cut(s)	130, 175, 266, 350, 378, 742
HspAI	GCGC	2 cut(s)	29, 696
Kzo9I	GATC	6 cut(s)	98, 256, 413, 476, 685, 726
LguI	GCTCTTC	1 cut(s)	609
LmnI	GCTCC	2 cut(s)	249, 355
Lsp1109I	GCAGC	4 cut(s)	38, 172, 596, 685
MabI	ACCWGGT	2 cut(s)	364, 559
MaeI	CTAG	2 cut(s)	474, 671
MaeIII	GTNAC	3 cut(s)	370, 380, 466
MalI	GATC	6 cut(s)	100, 258, 415, 478, 687, 728
MbiI	CCGCTC	1 cut(s)	512
MboI	GATC	6 cut(s)	98, 256, 413, 476, 685, 726
MboII	GAAGA	7 cut(s)	8, 11, 110, 473, 589, 596, 716
MflI	RGATCY	2 cut(s)	98, 476
MhlI	GDGCHC	4 cut(s)	254, 297, 490, 760
MluCI	AATT	3 cut(s)	191, 298, 311
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	6 cut(s)	348, 538, 562, 628, 818, 820
Mph1103I	ATGCAT	1 cut(s)	268
MseI	TTAA	3 cut(s)	39, 543, 630
MspA1I	CMGCKG	1 cut(s)	642
MspI	CCGG	1 cut(s)	588
MspR9I	CCNGG	3 cut(s)	342, 366, 561
Mva1269I	GAATGC	1 cut(s)	402
MvaI	CCWGG	3 cut(s)	342, 366, 561
MvnI	CGCG	1 cut(s)	696
MwoI	GCNNNNNNNGC	5 cut(s)	62, 494, 658, 740, 764
NdeII	GATC	6 cut(s)	98, 256, 413, 476, 685, 726
NlaIII	CATG	6 cut(s)	130, 175, 266, 350, 378, 742
NlaIV	GGNNCC	3 cut(s)	100, 177, 692
NmeAIII	GCCGAG	1 cut(s)	789
NmuCI	GTSAC	3 cut(s)	370, 380, 466
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	2 cut(s)	266, 378
PaeI	GCATGC	1 cut(s)	266
PagI	TCATGA	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	337
PciI	ACATGT	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	609
PctI	GAATGC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	7 cut(s)	28, 55, 162, 586, 695, 700, 745
Ple19I	CGATCG	2 cut(s)	416, 688
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PscI	ACATGT	1 cut(s)	374
PshBI	ATTAAT	1 cut(s)	543
Psp124BI	GAGCTC	1 cut(s)	760
Psp6I	CCWGG	3 cut(s)	340, 364, 559
PspGI	CCWGG	3 cut(s)	340, 364, 559
PspN4I	GGNNCC	3 cut(s)	100, 177, 692
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	2 cut(s)	98, 476
PvuI	CGATCG	2 cut(s)	416, 688
PvuII	CAGCTG	1 cut(s)	642
RsaI	GTAC	3 cut(s)	85, 236, 324
RsaNI	GTAC	3 cut(s)	84, 235, 323
SacI	GAGCTC	1 cut(s)	760
SapI	GCTCTTC	1 cut(s)	609
SaqAI	TTAA	3 cut(s)	39, 543, 630
SatI	GCNGC	7 cut(s)	27, 54, 161, 585, 694, 699, 744
Sau3AI	GATC	6 cut(s)	98, 256, 413, 476, 685, 726
ScaI	AGTACT	1 cut(s)	324
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	3 cut(s)	342, 366, 561
SduI	GDGCHC	4 cut(s)	254, 297, 490, 760
SexAI	ACCWGGT	2 cut(s)	364, 559
SfcI	CTRYAG	3 cut(s)	6, 401, 480
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	3 cut(s)	191, 298, 311
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	5 cut(s)	54, 512, 694, 743, 780
SspMI	CTAG	2 cut(s)	474, 671
SstI	GAGCTC	1 cut(s)	760
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	3 cut(s)	340, 364, 559
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	232, 451
TaqI	TCGA	1 cut(s)	443
TaqII	GACCGA	1 cut(s)	450
TasI	AATT	3 cut(s)	191, 298, 311
TatI	WGTACW	1 cut(s)	322
TauI	GCSGC	3 cut(s)	56, 696, 746
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	3 cut(s)	39, 543, 630
Tru9I	TTAA	3 cut(s)	39, 543, 630
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	3 cut(s)	370, 380, 466
TseI	GCWGC	4 cut(s)	26, 160, 584, 698
Tsp45I	GTSAC	3 cut(s)	370, 380, 466
TspDTI	ATGAA	3 cut(s)	304, 596, 690
TspGWI	ACGGA	4 cut(s)	252, 269, 613, 805
TspRI	CASTG	1 cut(s)	237
VneI	GTGCAC	1 cut(s)	293
VspI	ATTAAT	1 cut(s)	543
XapI	RAATTY	2 cut(s)	191, 311
XceI	RCATGY	2 cut(s)	266, 378
XspI	CTAG	2 cut(s)	474, 671
ZrmI	AGTACT	1 cut(s)	324
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.