Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006438.1

Orthogroup ID

OG0003547

Physical Location & Seq

Genomic Coordinates Forward (+)

13783 .. 14306

Gene Structure 524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006438.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

atgattgggagcttgaaccaggtgtcacatgtggtgactatctatttggaatgctacagctgtaaagagcctgttaaaccattgacactagacgaagtagccgatcggtgccacgctgctgaagatattgaaatgatttacaagatcatcgctcacatggcggcaaatgacagagctcttattgctgaaggcagttgcggttcaccacggagtgtcaaagttttcctcggcgagtgtaatgtggaggcattatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

85

Amino Acids

9.34

Weight (kDa)

4.98

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24620 AT4G24620
fragaria_vesca	FvH4_5g35680 FvH4_5g35680
malus_domestica	MD08G1194100.v1.1 MD15G1382200.v1.1
prunus_persica	Prupe.1G528400_v2.0.a1 Prupe.1G528400_v2.0.a1
pyrus_communis	pycom15g34220
rosa_chinensis	RchiOBHm_Chr7g0237251 RchiOBHm_Chr7g0237271 RchiOBHm_Chr7g0237281 RchiOBHm_Chr7g0237311 RchiOBHm_Chr7g0237321
rosa_laevigata	RLG00000001012 RLG00000001018
rosa_multiflora	Rmu_sc0002923.1_g000043 Rmu_sc0002923.1_g000049 Rmu_sc0006438.1_g000001 Rmu_sc0006438.1_g000006 Rmu_sc0006438.1_g000007
rosa_roxburghii	Rroxscaffold_3G00224320
rosa_rugosa	Rorug07G0302600 Rorug07G0302700
rosa_samantha	Rh7AG459300 Rh7AG459500 Rh7AG459600 Rh7AG459700 Rh7AG459800 Rh7BG429700 Rh7CG477100 Rh7DG446400
rosa_wichuraiana	Rw0G003870 Rw7G038060 Rw7G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	108
AciI	CCGC	2 cut(s)	161, 198
AcuI	CTGAAG	2 cut(s)	141, 207
AdeI	CACNNNGTG	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	16, 131
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	3 cut(s)	12, 60, 176
AluI	AGCT	3 cut(s)	12, 60, 176
Alw21I	GWGCWC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	28, 60
AsuHPI	GGTGA	2 cut(s)	46, 195
BanI	GGYRCC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	20
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	55
BisI	GCNGC	2 cut(s)	117, 162
BlsI	GCNGC	2 cut(s)	118, 163
Bme1390I	CCNGG	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	206, 226
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	206, 226
BseXI	GCAGC	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	106
BshNI	GGYRCC	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	103, 144
BspACI	CCGC	2 cut(s)	161, 198
BspLI	GGNNCC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	108
BssECI	CCNNGG	2 cut(s)	206, 226
BssMI	GATC	2 cut(s)	103, 144
Bst2UI	CCWGG	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	206
BstKTI	GATC	2 cut(s)	106, 147
BstMBI	GATC	2 cut(s)	103, 144
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 182
BstNI	CCWGG	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	206
BtgZI	GCGATG	1 cut(s)	133
CsiI	ACCWGGT	1 cut(s)	18
CviAII	CATG	2 cut(s)	29, 157
CviJI	RGCY	5 cut(s)	12, 60, 70, 101, 176
CviKI_1	RGCY	5 cut(s)	12, 60, 70, 101, 176
DpnI	GATC	2 cut(s)	105, 146
DpnII	GATC	2 cut(s)	103, 144
DraIII	CACNNNGTG	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	176
Eco57I	CTGAAG	2 cut(s)	141, 207
EcoICRI	GAGCTC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	2 cut(s)	32, 160
FaiI	YATR	3 cut(s)	30, 158, 253
FatI	CATG	2 cut(s)	28, 156
Fnu4HI	GCNGC	2 cut(s)	117, 162
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	117, 162
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	2 cut(s)	117, 162
Hin1II	CATG	2 cut(s)	32, 160
HphI	GGTGA	2 cut(s)	46, 195
Hpy166II	GTNNAC	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 182
Hsp92II	CATG	2 cut(s)	32, 160
Kzo9I	GATC	2 cut(s)	103, 144
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	3 cut(s)	5, 32, 84
Lsp1109I	GCAGC	1 cut(s)	103
MabI	ACCWGGT	1 cut(s)	18
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	2 cut(s)	24, 34
MalI	GATC	2 cut(s)	105, 146
MboI	GATC	2 cut(s)	103, 144
MboII	GAAGA	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	178
MnlI	CCTC	2 cut(s)	236, 238
MseI	TTAA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	158, 182
NdeII	GATC	2 cut(s)	103, 144
NlaIII	CATG	2 cut(s)	32, 160
NlaIV	GGNNCC	1 cut(s)	110
NmeAIII	GCCGAG	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	24, 34
NspI	RCATGY	1 cut(s)	32
PciI	ACATGT	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	118, 163
Ple19I	CGATCG	1 cut(s)	106
PscI	ACATGT	1 cut(s)	28
Psp124BI	GAGCTC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	110
PvuI	CGATCG	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	117, 162
Sau3AI	GATC	2 cut(s)	103, 144
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	4 cut(s)	14, 24, 62, 178
SexAI	ACCWGGT	1 cut(s)	18
SfcI	CTRYAG	1 cut(s)	55
SsiI	CCGC	2 cut(s)	161, 198
SspMI	CTAG	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	18
TauI	GCSGC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseFI	GTSAC	2 cut(s)	24, 34
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	2 cut(s)	24, 34
TspGWI	ACGGA	1 cut(s)	223
XceI	RCATGY	1 cut(s)	32
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.